Wall clock time and date at job start Tue Mar 31 2020 12:09:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31561 * 1
3 3 Si 1.86797 * 120.00309 * 2 1
4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1
6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1
7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1
9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1
10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2
11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7
12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9
13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10
14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11
15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12
16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13
17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14
18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14
19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15
20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16
21 21 C 1.35346 * 127.92031 * 89.70303 * 20 19 18
22 22 N 1.31742 * 112.46673 * 179.84850 * 21 20 19
23 23 N 1.27582 * 118.26802 * 0.48463 * 22 21 20
24 24 S 1.56503 * 109.22219 * 359.72380 * 23 22 21
25 25 C 1.38123 * 120.06577 * 0.04594 * 14 13 12
26 26 H 0.97000 * 119.99462 * 0.02562 * 1 2 3
27 27 H 1.08002 * 120.03226 * 359.97438 * 11 10 9
28 28 H 1.07993 * 119.96486 * 180.27241 * 12 11 10
29 29 H 1.08001 * 119.93050 * 179.70445 * 13 12 11
30 30 H 1.08997 * 109.47004 * 30.02720 * 15 14 13
31 31 H 1.08999 * 109.46889 * 150.02243 * 15 14 13
32 32 H 1.09002 * 109.47370 * 300.00168 * 19 18 16
33 33 H 1.09004 * 109.47479 * 60.00306 * 19 18 16
34 34 H 1.07996 * 123.76721 * 0.02562 * 21 20 19
35 35 H 1.08006 * 120.03219 * 180.02562 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2497 1.6177 0.0000
4 1 3.7096 1.3463 -0.0006
5 1 1.8909 2.3964 -1.2124
6 1 1.8910 2.3964 1.2126
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3347 -2.3685 -0.0016
10 6 2.0698 -3.5048 0.1041
11 6 3.4573 -3.4403 0.0852
12 6 4.2023 -4.5972 0.1986
13 6 3.5684 -5.8208 0.3192
14 6 2.1873 -5.8888 0.3331
15 6 1.5008 -7.2238 0.4651
16 6 1.2649 -7.8051 -0.9051
17 8 1.6176 -7.1974 -1.8880
18 8 0.6629 -8.9979 -1.0335
19 6 0.4679 -9.4959 -2.3834
20 6 -0.2169 -10.8372 -2.3300
21 6 -1.5459 -11.0935 -2.3361
22 7 -1.8102 -12.3830 -2.2826
23 7 -0.8309 -13.1986 -2.2243
24 16 0.5114 -12.3940 -2.2396
25 6 1.4365 -4.7345 0.2256
26 1 -0.4849 0.8401 -0.0004
27 1 3.9527 -2.4857 -0.0140
28 1 5.2811 -4.5473 0.1885
29 1 4.1534 -6.7248 0.4030
30 1 2.1300 -7.9003 1.0435
31 1 0.5456 -7.0924 0.9735
32 1 -0.1499 -8.7942 -2.9439
33 1 1.4350 -9.6015 -2.8750
34 1 -2.3049 -10.3266 -2.3827
35 1 0.3579 -4.7882 0.2370
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000810656657.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:49
Heat of formation + Delta-G solvation = -33.217067 kcal
Electronic energy + Delta-G solvation = -22506.496167 eV
Core-core repulsion = 18790.652244 eV
Total energy + Delta-G solvation = -3715.843922 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.066 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.97421 -41.59333 -40.65839 -38.50626 -37.55519 -34.36155 -34.10792 -33.49221
-30.94350 -29.96995 -28.63247 -27.28318 -26.19441 -23.48937 -23.12423 -22.29909
-21.77175 -20.22183 -19.50099 -18.80248 -18.78521 -17.70368 -17.54378 -16.72628
-16.67911 -16.39803 -16.13000 -16.08300 -15.49371 -15.18018 -15.02696 -14.66387
-14.35423 -14.08555 -13.87412 -13.60139 -13.24238 -13.00982 -12.98110 -12.77039
-12.50830 -12.39833 -12.22808 -12.08141 -11.79906 -11.68602 -11.20243 -11.17586
-11.04616 -10.82373 -10.79707 -9.68175 -8.98539 -8.46750 -6.14922 -1.00489
-0.00471 0.44226 0.60310 0.75356 1.07046 1.19227 1.35248 1.43332
1.53543 1.81150 2.17873 2.84269 3.06602 3.18186 3.41843 3.47970
3.63102 3.74662 4.00167 4.10977 4.26193 4.32062 4.33020 4.41021
4.56710 4.61940 4.64425 4.75098 5.03664 5.13424 5.24624 5.32828
5.64000 5.71634 5.74818 6.03305 6.22991 6.62666 6.72050 6.98294
7.79597 8.76868
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.028753 B = 0.002174 C = 0.002069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.587748 B =12879.123067 C =13531.831292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.025 4.025
3 Si 1.019 2.981
4 H -0.251 1.251
5 H -0.270 1.270
6 H -0.268 1.268
7 C -0.412 4.412
8 H 0.101 0.899
9 O -0.234 6.234
10 C 0.110 3.890
11 C -0.242 4.242
12 C -0.074 4.074
13 C -0.174 4.174
14 C -0.037 4.037
15 C -0.062 4.062
16 C 0.473 3.527
17 O -0.527 6.527
18 O -0.352 6.352
19 C 0.147 3.853
20 C -0.277 4.277
21 C 0.022 3.978
22 N -0.276 5.276
23 N -0.322 5.322
24 S 0.521 5.479
25 C -0.188 4.188
26 H 0.272 0.728
27 H 0.117 0.883
28 H 0.147 0.853
29 H 0.153 0.847
30 H 0.157 0.843
31 H 0.132 0.868
32 H 0.102 0.898
33 H 0.105 0.895
34 H 0.224 0.776
35 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.537 -22.528 -1.700 23.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.222 4.222
3 Si 0.838 3.162
4 H -0.174 1.174
5 H -0.195 1.195
6 H -0.193 1.193
7 C -0.488 4.488
8 H 0.119 0.881
9 O -0.141 6.141
10 C 0.060 3.940
11 C -0.261 4.261
12 C -0.092 4.092
13 C -0.193 4.193
14 C -0.038 4.038
15 C -0.099 4.099
16 C 0.317 3.683
17 O -0.415 6.415
18 O -0.269 6.269
19 C 0.071 3.929
20 C -0.415 4.415
21 C -0.144 4.144
22 N -0.140 5.140
23 N -0.303 5.303
24 S 0.656 5.344
25 C -0.208 4.208
26 H 0.081 0.919
27 H 0.135 0.865
28 H 0.164 0.836
29 H 0.171 0.829
30 H 0.175 0.825
31 H 0.150 0.850
32 H 0.120 0.880
33 H 0.123 0.877
34 H 0.240 0.760
35 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 5.525 -24.138 -1.954 24.840
hybrid contribution -0.811 2.674 -0.422 2.826
sum 4.714 -21.464 -2.375 22.104
Atomic orbital electron populations
1.70193 1.08007 1.28675 1.49137 1.26592 0.96876 1.02739 0.95980
0.84523 0.78253 0.74853 0.78539 1.17447 1.19479 1.19255 1.21850
0.92493 0.81452 1.52988 0.88143 1.83936 1.35922 1.12563 1.81680
1.19883 0.91669 0.87965 0.94485 1.21345 0.93158 1.00368 1.11266
1.21151 1.00329 0.91428 0.96267 1.21028 0.93321 0.98268 1.06640
1.19123 0.93861 0.92375 0.98395 1.20404 1.05325 0.93206 0.90985
1.23954 0.73254 0.78206 0.92916 1.90754 1.48499 1.60597 1.41658
1.86535 1.72198 1.35577 1.32596 1.21025 1.01621 0.88413 0.81817
1.26921 0.98203 1.03553 1.12834 1.24218 0.96621 0.93619 0.99960
1.71403 1.24425 1.01957 1.16185 1.78629 1.00615 1.28077 1.22948
1.81249 1.16634 0.89587 1.46918 1.20252 0.99498 0.90390 1.10632
0.91886 0.86521 0.83575 0.82920 0.82533 0.84975 0.88007 0.87673
0.75961 0.87185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.82 13.67 21.61 0.30 -56.53 16
2 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16
3 Si 1.02 42.99 29.55 68.60 2.03 45.02 16
4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16
5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16
6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16
7 C -0.41 -24.11 9.49 67.92 0.64 -23.47 16
8 H 0.10 5.41 5.21 -2.91 -0.02 5.40 16
9 O -0.23 -14.19 9.76 -22.74 -0.22 -14.41 16
10 C 0.11 5.48 6.65 22.58 0.15 5.63 16
11 C -0.24 -10.51 9.17 22.39 0.21 -10.30 16
12 C -0.07 -2.45 10.04 22.25 0.22 -2.22 16
13 C -0.17 -5.02 9.70 22.30 0.22 -4.80 16
14 C -0.04 -1.15 4.37 -19.88 -0.09 -1.24 16
15 C -0.06 -1.25 5.94 29.10 0.17 -1.07 16
16 C 0.47 10.79 7.95 71.24 0.57 11.36 16
17 O -0.53 -16.48 15.78 21.96 0.35 -16.13 16
18 O -0.35 -6.28 10.20 -51.35 -0.52 -6.80 16
19 C 0.15 2.12 6.05 71.24 0.43 2.55 16
20 C -0.28 -3.73 6.32 25.02 0.16 -3.58 16
21 C 0.02 0.33 11.53 84.04 0.97 1.30 16
22 N -0.28 -5.64 11.68 -61.14 -0.71 -6.36 16
23 N -0.32 -6.24 12.54 37.02 0.46 -5.78 16
24 S 0.52 6.28 23.40 -56.49 -1.32 4.95 16
25 C -0.19 -7.85 9.65 22.39 0.22 -7.64 16
26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
27 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16
28 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16
29 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16
30 H 0.16 1.81 8.08 -2.39 -0.02 1.79 16
31 H 0.13 2.24 8.08 -2.39 -0.02 2.22 16
32 H 0.10 1.46 8.13 -2.39 -0.02 1.44 16
33 H 0.11 1.27 8.13 -2.38 -0.02 1.25 16
34 H 0.22 2.24 8.06 -2.91 -0.02 2.21 16
35 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16
Total: -1.00 -80.39 334.09 5.83 -74.56
By element:
Atomic # 1 Polarization: 14.75 SS G_CDS: 1.15 Total: 15.90 kcal
Atomic # 6 Polarization: -38.75 SS G_CDS: 4.33 Total: -34.42 kcal
Atomic # 7 Polarization: -68.71 SS G_CDS: 0.05 Total: -68.66 kcal
Atomic # 8 Polarization: -36.94 SS G_CDS: -0.40 Total: -37.34 kcal
Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal
Atomic # 16 Polarization: 6.28 SS G_CDS: -1.32 Total: 4.95 kcal
Total: -80.39 5.83 -74.56 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810656657.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.339 kcal
(2) G-P(sol) polarization free energy of solvation -80.388 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.049 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds