Wall clock time and date at job start Tue Mar 31 2020 12:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47380 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.47149 * 29.99805 * 3 2 1 6 6 H 1.48502 * 109.47275 * 149.99891 * 3 2 1 7 7 C 1.38941 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00555 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00157 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99982 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99814 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47352 * 180.02562 * 12 10 9 14 14 C 1.39669 * 120.00544 * 180.02562 * 13 12 10 15 15 C 1.39007 * 120.02808 * 359.97438 * 14 13 12 16 16 C 1.38151 * 120.08037 * 180.02562 * 15 14 13 17 17 C 1.38156 * 120.15793 * 359.97438 * 16 15 14 18 18 C 1.39008 * 120.06436 * 359.97438 * 17 16 15 19 19 S 1.76199 * 120.04114 * 179.97438 * 18 17 16 20 20 C 1.81395 * 103.00308 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47079 * 59.99616 * 20 19 18 22 22 F 1.39893 * 109.47406 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.46553 * 300.00102 * 20 19 18 24 24 C 1.38731 * 120.03507 * 179.97438 * 14 13 12 25 25 H 0.97012 * 119.99872 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99278 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.47065 * 60.00318 * 12 10 9 28 28 H 1.09000 * 109.47161 * 300.00426 * 12 10 9 29 29 H 0.97005 * 119.99805 * 0.02562 * 13 12 10 30 30 H 1.07998 * 119.96389 * 0.04944 * 15 14 13 31 31 H 1.08005 * 119.92052 * 179.97438 * 16 15 14 32 32 H 1.07993 * 119.96892 * 179.97438 * 17 16 15 33 33 H 1.07998 * 120.07734 * 0.25216 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2032 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1956 -5.9764 0.0027 14 6 1.7301 -7.2933 0.0027 15 6 0.3636 -7.5480 0.0028 16 6 -0.0981 -8.8501 0.0034 17 6 0.7959 -9.9035 0.0034 18 6 2.1638 -9.6559 0.0022 19 16 3.3034 -10.9998 0.0028 20 6 2.2193 -12.4542 0.0042 21 9 1.4114 -12.4348 -1.1377 22 9 2.9981 -13.6163 0.0054 23 9 1.4123 -12.4330 1.1468 24 6 2.6310 -8.3483 0.0027 25 1 -0.4850 0.8402 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6167 -4.9209 -0.8876 28 1 0.6173 -4.9204 0.8924 29 1 3.1493 -5.7992 0.0030 30 1 -0.3381 -6.7271 0.0021 31 1 -1.1604 -9.0451 0.0039 32 1 0.4317 -10.9201 0.0042 33 1 3.6932 -8.1530 0.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863365927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:12 Heat of formation + Delta-G solvation = -160.815926 kcal Electronic energy + Delta-G solvation = -23035.199019 eV Core-core repulsion = 18771.965255 eV Total energy + Delta-G solvation = -4263.233764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.49241 -49.10161 -49.00698 -40.73280 -39.90855 -36.56523 -35.81794 -33.38619 -32.12292 -31.11706 -28.36876 -27.65326 -26.24221 -24.06207 -22.89850 -21.26775 -20.62226 -20.04627 -19.98076 -19.87178 -19.02630 -17.62626 -17.22645 -17.06271 -16.39183 -16.36729 -15.97233 -15.89189 -15.85996 -15.71643 -15.41745 -15.19570 -15.12760 -14.87026 -14.66576 -14.60282 -14.23304 -13.85278 -13.68744 -13.53984 -12.93893 -12.58978 -12.47159 -12.41835 -12.13800 -11.71616 -11.66215 -11.55643 -10.71717 -10.54565 -10.09666 -9.10804 -8.52067 -8.46081 -6.01491 -1.13199 0.12763 0.45120 0.51292 1.35675 1.42272 1.53991 1.82080 1.92522 2.18196 2.39189 2.62026 2.64667 2.74236 3.15651 3.16134 3.85745 4.02311 4.17829 4.18848 4.41795 4.44066 4.49538 4.52024 4.81858 5.05012 5.25507 5.37388 5.46404 5.65328 5.90230 6.26107 6.50355 6.68110 7.04596 7.45260 7.97467 8.64612 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.045253 B = 0.002118 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.593460 B =13218.912344 C =13657.713859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.081 0.919 9 N -0.560 5.560 10 C 0.429 3.571 11 O -0.631 6.631 12 C 0.127 3.873 13 N -0.730 5.730 14 C 0.231 3.769 15 C -0.195 4.195 16 C -0.044 4.044 17 C -0.195 4.195 18 C -0.068 4.068 19 S -0.019 6.019 20 C 0.456 3.544 21 F -0.164 7.164 22 F -0.147 7.147 23 F -0.164 7.164 24 C -0.175 4.175 25 H 0.280 0.720 26 H 0.401 0.599 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.405 0.595 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -22.740 0.004 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.099 0.901 9 N -0.196 5.196 10 C 0.216 3.784 11 O -0.519 6.519 12 C -0.001 4.001 13 N -0.360 5.360 14 C 0.124 3.876 15 C -0.219 4.219 16 C -0.064 4.064 17 C -0.220 4.220 18 C -0.181 4.181 19 S 0.216 5.784 20 C 0.294 3.706 21 F -0.145 7.145 22 F -0.129 7.129 23 F -0.146 7.146 24 C -0.204 4.204 25 H 0.089 0.911 26 H 0.235 0.765 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.242 0.758 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.306 -22.564 0.009 22.566 hybrid contribution -1.021 0.833 -0.006 1.318 sum -1.327 -21.731 0.003 21.771 Atomic orbital electron populations 1.69655 1.06792 1.29592 1.49332 1.26042 0.96546 1.02450 0.95865 0.84930 0.77919 0.76830 0.78700 1.19599 1.19500 1.19780 1.19668 0.92803 0.83791 1.50442 0.90107 1.41833 1.09604 1.04518 1.63616 1.20674 0.88177 0.86300 0.83225 1.90488 1.15811 1.87656 1.57994 1.20892 0.91615 0.83316 1.04302 1.44512 1.09339 1.01376 1.80736 1.17782 0.93401 0.83577 0.92868 1.21093 0.93102 0.98677 1.09036 1.21077 1.00653 0.90634 0.94007 1.21201 0.90954 1.00646 1.09184 1.21150 0.96074 0.95052 1.05862 1.86666 1.06465 0.92109 1.93114 1.22804 0.82709 0.89176 0.75932 1.93326 1.74544 1.96491 1.50182 1.93265 1.74051 1.49332 1.96224 1.93328 1.74600 1.96487 1.50140 1.20016 0.99581 0.89353 1.11408 0.91051 0.76476 0.88078 0.88091 0.75769 0.83810 0.82423 0.85536 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.97 13.05 21.66 0.28 -46.69 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 3 Si 0.99 41.15 29.55 68.60 2.03 43.17 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.34 -18.25 9.68 84.04 0.81 -17.44 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.56 -26.84 5.29 -306.98 -1.62 -28.47 16 10 C 0.43 18.86 7.85 87.66 0.69 19.55 16 11 O -0.63 -32.60 15.24 -3.07 -0.05 -32.65 16 12 C 0.13 3.91 5.39 85.63 0.46 4.37 16 13 N -0.73 -21.94 5.70 -343.21 -1.96 -23.89 16 14 C 0.23 5.99 6.65 38.19 0.25 6.25 16 15 C -0.19 -4.26 9.31 22.43 0.21 -4.05 16 16 C -0.04 -0.83 10.03 22.23 0.22 -0.60 16 17 C -0.19 -4.05 8.68 22.44 0.19 -3.86 16 18 C -0.07 -1.54 6.10 22.60 0.14 -1.41 16 19 S -0.02 -0.36 21.96 -56.49 -1.24 -1.60 16 20 C 0.46 8.25 2.98 113.37 0.34 8.59 16 21 F -0.16 -3.05 15.62 44.97 0.70 -2.34 16 22 F -0.15 -2.58 17.36 44.97 0.78 -1.80 16 23 F -0.16 -3.05 15.62 44.97 0.70 -2.35 16 24 C -0.18 -4.34 9.64 22.54 0.22 -4.12 16 25 H 0.28 13.47 8.31 -92.70 -0.77 12.70 16 26 H 0.40 17.97 7.90 -92.71 -0.73 17.24 16 27 H 0.10 2.69 7.95 -2.38 -0.02 2.67 16 28 H 0.10 2.69 7.95 -2.39 -0.02 2.67 16 29 H 0.41 13.51 7.45 -92.70 -0.69 12.82 16 30 H 0.14 2.70 6.72 -2.91 -0.02 2.68 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.13 2.38 4.54 -2.91 -0.01 2.37 16 33 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -60.67 316.62 3.42 -57.24 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.21 Total: 32.05 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.00 Total: 7.32 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.30 Total: -99.04 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.05 Total: -32.65 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 2.19 Total: -6.49 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.24 Total: -1.60 kcal Total: -60.67 3.42 -57.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863365927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.571 kcal (2) G-P(sol) polarization free energy of solvation -60.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds