Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48497 * 109.46922 * 239.99783 * 3 2 1 5 5 H 1.48506 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47108 * 119.99476 * 3 2 1 7 7 C 1.38812 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49167 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11569 * 155.36456 * 10 9 7 12 12 N 1.46501 * 113.74390 * 137.95227 * 11 10 9 13 13 C 1.34781 * 120.00004 * 156.92019 * 12 11 10 14 14 O 1.21642 * 119.99677 * 0.02562 * 13 12 11 15 15 C 1.47183 * 119.99922 * 180.02562 * 13 12 11 16 16 C 1.36008 * 123.46283 * 359.97438 * 15 13 12 17 17 S 1.70446 * 110.81990 * 180.02562 * 16 15 13 18 18 C 1.75505 * 92.44378 * 0.02562 * 17 16 15 19 19 C 1.32774 * 110.57585 * 359.97438 * 18 17 16 20 20 C 1.50701 * 123.45452 * 179.97438 * 19 18 17 21 21 F 1.39895 * 109.47521 * 0.02871 * 20 19 18 22 22 F 1.39909 * 109.46622 * 120.02773 * 20 19 18 23 23 F 1.39900 * 109.46845 * 240.02289 * 20 19 18 24 24 C 1.47812 * 134.45485 * 359.86729 * 9 7 2 25 25 H 0.97005 * 119.99962 * 0.02562 * 1 2 3 26 26 H 1.08995 * 113.76889 * 41.06062 * 10 9 7 27 27 H 1.09000 * 113.76953 * 269.65842 * 10 9 7 28 28 H 1.09007 * 113.74161 * 269.15495 * 11 10 9 29 29 H 0.97000 * 120.00162 * 336.92606 * 12 11 10 30 30 H 1.08005 * 124.59041 * 0.02562 * 16 15 13 31 31 H 1.08007 * 124.71283 * 180.26334 * 18 17 16 32 32 H 1.09006 * 113.76956 * 90.37629 * 24 9 7 33 33 H 1.09001 * 113.83891 * 318.91944 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6408 12 7 -0.3333 -5.2613 0.0978 13 6 -1.2733 -5.8931 0.8285 14 8 -1.5570 -5.4846 1.9386 15 6 -1.9564 -7.0773 0.2833 16 6 -1.6951 -7.5933 -0.9477 17 16 -2.6679 -8.9598 -1.2507 18 6 -3.4520 -8.8421 0.3150 19 6 -2.9737 -7.8102 1.0000 20 6 -3.4449 -7.4410 2.3831 21 9 -4.4321 -8.3423 2.7955 22 9 -2.3660 -7.4920 3.2723 23 9 -3.9737 -6.1459 2.3653 24 6 -0.1057 -2.7570 0.0025 25 1 -0.4850 0.8401 -0.0004 26 1 2.5624 -4.0323 0.6558 27 1 1.8319 -4.2350 -0.9970 28 1 0.3594 -4.0639 1.7306 29 1 -0.1073 -5.5869 -0.7875 30 1 -0.9695 -7.1916 -1.6396 31 1 -4.2141 -9.5183 0.6735 32 1 -0.5312 -2.8721 -0.9945 33 1 -0.7189 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031494975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = -113.414574 kcal Electronic energy + Delta-G solvation = -24525.359861 eV Core-core repulsion = 20264.181573 eV Total energy + Delta-G solvation = -4261.178287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.04963 -48.61311 -48.48678 -41.20341 -39.50732 -38.03921 -35.25064 -33.86617 -31.59847 -29.40553 -27.89280 -26.63811 -25.85371 -24.62720 -22.44435 -21.44178 -20.75750 -19.50315 -19.38264 -19.28132 -18.79290 -18.13175 -17.34974 -17.05180 -16.94015 -16.08765 -15.74546 -15.46651 -15.36988 -15.19334 -14.93831 -14.69715 -14.69114 -14.65066 -14.40902 -14.02871 -14.00162 -13.63676 -13.30284 -13.25428 -13.21264 -12.80263 -12.64061 -12.32610 -12.21936 -11.97511 -11.54028 -11.02289 -10.88515 -10.37012 -10.03638 -9.53698 -8.98670 -7.92540 -5.28303 -0.39484 0.30563 0.40690 0.63811 1.45181 1.49569 1.55687 1.82680 2.06664 2.18402 2.49246 2.90901 3.14477 3.24583 3.38137 3.45745 3.67329 3.83285 3.87748 4.24344 4.31889 4.34908 4.49772 4.67598 4.72881 4.81640 4.89558 5.12804 5.22308 5.47068 5.66984 5.88185 6.53782 6.86773 7.21365 7.57457 8.49887 9.24071 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.003196 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.751703 B = 8757.844007 C = 9473.796030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.125 3.875 11 C 0.121 3.879 12 N -0.692 5.692 13 C 0.561 3.439 14 O -0.570 6.570 15 C -0.155 4.155 16 C -0.205 4.205 17 S 0.351 5.649 18 C -0.181 4.181 19 C -0.184 4.184 20 C 0.526 3.474 21 F -0.176 7.176 22 F -0.182 7.182 23 F -0.184 7.184 24 C 0.153 3.847 25 H 0.248 0.752 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.415 0.585 30 H 0.209 0.791 31 H 0.208 0.792 32 H 0.028 0.972 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -25.587 -5.778 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.366 5.366 10 C 0.000 4.000 11 C 0.015 3.985 12 N -0.344 5.344 13 C 0.347 3.653 14 O -0.451 6.451 15 C -0.172 4.172 16 C -0.343 4.343 17 S 0.619 5.381 18 C -0.318 4.318 19 C -0.198 4.198 20 C 0.470 3.530 21 F -0.158 7.158 22 F -0.163 7.163 23 F -0.166 7.166 24 C 0.026 3.974 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.252 0.748 30 H 0.226 0.774 31 H 0.225 0.775 32 H 0.046 0.954 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.792 -25.949 -6.213 27.533 hybrid contribution 0.345 2.502 1.402 2.889 sum -6.446 -23.447 -4.811 24.788 Atomic orbital electron populations 1.70042 1.06737 1.25805 1.57857 1.25723 0.96512 1.01253 1.02628 0.85086 0.77067 0.78312 0.78457 1.19752 1.22280 1.20150 1.19412 0.91023 0.82884 1.43255 0.89060 1.46019 1.03249 1.00873 1.86425 1.23011 0.94679 0.83499 0.98858 1.23203 0.93274 0.83449 0.98578 1.45609 1.39058 1.29394 1.20342 1.18118 0.79531 0.82897 0.84768 1.90850 1.65025 1.67673 1.21518 1.19646 1.01732 0.99328 0.96455 1.26189 1.06184 1.03012 0.98922 1.82901 1.25881 1.20138 1.09157 1.25978 1.05115 1.00373 1.00311 1.19823 1.03456 1.01470 0.95023 1.17849 0.74791 0.74236 0.86134 1.93146 1.63175 1.67588 1.91869 1.93194 1.55879 1.96026 1.71221 1.93206 1.86770 1.39775 1.96830 1.22589 0.87355 0.90955 0.96496 0.94284 0.91692 0.91149 0.89221 0.74757 0.77437 0.77527 0.95391 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.69 11.39 21.65 0.25 -59.44 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.24 -13.42 10.70 84.03 0.90 -12.52 16 8 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 9 N -0.64 -32.94 3.70 -716.71 -2.65 -35.59 16 10 C 0.12 4.72 8.69 86.49 0.75 5.47 16 11 C 0.12 4.77 4.40 46.75 0.21 4.97 16 12 N -0.69 -20.71 5.34 -450.86 -2.41 -23.11 16 13 C 0.56 18.56 7.79 86.59 0.67 19.23 16 14 O -0.57 -24.44 12.60 -4.16 -0.05 -24.49 16 15 C -0.16 -3.70 5.98 -19.87 -0.12 -3.82 16 16 C -0.20 -2.72 10.38 67.30 0.70 -2.02 16 17 S 0.35 2.52 23.02 -56.49 -1.30 1.22 16 18 C -0.18 -2.40 10.45 66.64 0.70 -1.71 16 19 C -0.18 -4.26 5.44 -19.46 -0.11 -4.37 16 20 C 0.53 15.47 2.79 71.24 0.20 15.67 16 21 F -0.18 -4.28 16.42 44.97 0.74 -3.55 16 22 F -0.18 -6.20 15.79 44.97 0.71 -5.49 16 23 F -0.18 -6.60 15.79 44.97 0.71 -5.89 16 24 C 0.15 7.59 7.33 86.45 0.63 8.22 16 25 H 0.25 15.13 8.31 -92.70 -0.77 14.35 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.22 8.11 -2.39 -0.02 2.21 16 28 H 0.09 4.00 7.51 -2.38 -0.02 3.98 16 29 H 0.41 8.73 7.21 -92.71 -0.67 8.06 16 30 H 0.21 1.47 7.01 -2.91 -0.02 1.45 16 31 H 0.21 1.60 7.65 -2.91 -0.02 1.58 16 32 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.03 1.77 7.16 -2.39 -0.02 1.75 16 Total: -1.00 -80.76 311.44 3.54 -77.22 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.52 Total: 5.20 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 5.00 Total: 25.64 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -4.82 Total: -118.15 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 9 Polarization: -17.09 SS G_CDS: 2.16 Total: -14.93 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.30 Total: 1.22 kcal Total: -80.76 3.54 -77.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031494975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.193 kcal (2) G-P(sol) polarization free energy of solvation -80.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds