Wall clock time and date at job start Tue Mar 31 2020 12:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99735 * 2 1 4 4 H 1.48501 * 109.46832 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47349 * 300.00108 * 3 2 1 6 6 H 1.48500 * 109.47082 * 60.00429 * 3 2 1 7 7 C 1.37877 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00151 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00087 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40423 * 71.28158 * 9 7 2 11 11 O 1.42103 * 106.40366 * 298.36092 * 9 7 2 12 12 N 1.65599 * 107.22112 * 184.82385 * 9 7 2 13 13 C 1.39918 * 120.00222 * 65.87276 * 12 9 7 14 14 C 1.38872 * 120.01671 * 254.47869 * 13 12 9 15 15 C 1.38096 * 119.97849 * 179.73911 * 14 13 12 16 16 C 1.38734 * 120.01903 * 0.53310 * 15 14 13 17 17 O 1.35979 * 119.98058 * 179.74287 * 16 15 14 18 18 C 1.35724 * 117.99744 * 251.05117 * 17 16 15 19 19 C 1.39290 * 120.85275 * 3.86981 * 18 17 16 20 20 C 1.37956 * 119.09225 * 179.74906 * 19 18 17 21 21 N 1.31972 * 120.82388 * 0.53280 * 20 19 18 22 22 C 1.31967 * 121.86893 * 359.71602 * 21 20 19 23 23 C 1.37962 * 120.82624 * 0.02562 * 22 21 20 24 24 C 1.38725 * 120.03108 * 359.72015 * 16 15 14 25 25 C 1.38093 * 120.01871 * 0.02562 * 24 16 15 26 26 H 0.96993 * 120.00159 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00277 * 245.87828 * 12 9 7 28 28 H 1.08000 * 120.01368 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.99428 * 180.23022 * 15 14 13 30 30 H 1.08006 * 120.45037 * 359.97438 * 19 18 17 31 31 H 1.07999 * 119.59286 * 180.25151 * 20 19 18 32 32 H 1.07997 * 119.58358 * 179.97438 * 22 21 20 33 33 H 1.07995 * 120.45610 * 179.97438 * 23 22 21 34 34 H 1.07998 * 119.98939 * 180.02562 * 24 16 15 35 35 H 1.08002 * 120.00869 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.5436 -2.8485 -1.2914 11 8 0.3626 -2.7440 1.1993 12 7 2.2435 -3.9326 0.1318 13 6 2.9997 -4.0621 1.3019 14 6 4.3354 -3.6823 1.3114 15 6 5.0795 -3.8053 2.4683 16 6 4.4960 -4.3185 3.6176 17 8 5.2309 -4.4442 4.7548 18 6 5.5695 -5.6946 5.1596 19 6 5.2436 -6.8078 4.3885 20 6 5.6101 -8.0617 4.8321 21 7 6.2515 -8.2137 5.9754 22 6 6.5732 -7.1844 6.7361 23 6 6.2468 -5.8979 6.3598 24 6 3.1632 -4.7029 3.6073 25 6 2.4163 -4.5756 2.4528 26 1 -0.4850 0.8400 0.0004 27 1 2.3755 -4.5532 -0.6020 28 1 4.7912 -3.2873 0.4155 29 1 6.1174 -3.5066 2.4770 30 1 4.7145 -6.6907 3.4542 31 1 5.3651 -8.9301 4.2386 32 1 7.0980 -7.3514 7.6651 33 1 6.5127 -5.0599 6.9870 34 1 2.7095 -5.1019 4.5025 35 1 1.3787 -4.8754 2.4448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:50 Heat of formation + Delta-G solvation = -78.210850 kcal Electronic energy + Delta-G solvation = -23619.966301 eV Core-core repulsion = 19902.171301 eV Total energy + Delta-G solvation = -3717.794999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17841 -40.49356 -39.16822 -37.43668 -36.21009 -35.52085 -35.10291 -32.56185 -32.30637 -32.03192 -29.38577 -28.27546 -24.95233 -24.53071 -23.88689 -22.85747 -21.12807 -19.99231 -19.56427 -18.76675 -18.29975 -18.20070 -17.27990 -17.00566 -16.82266 -16.30290 -15.97002 -15.72994 -15.57042 -15.24136 -15.13383 -14.58265 -14.52560 -14.07741 -14.06987 -13.95561 -13.51698 -13.31971 -13.04375 -12.74819 -12.57236 -12.48254 -12.40152 -12.29160 -12.22918 -11.27809 -11.15501 -10.74232 -10.58321 -10.23561 -10.11689 -10.05367 -9.53090 -8.77506 -7.49972 -0.26485 0.11929 0.25422 0.26130 0.38484 1.32848 1.34369 1.51400 1.89103 2.19043 2.56110 2.59775 2.82674 2.83457 3.57370 3.62393 3.68479 3.82812 3.86091 3.94972 4.12644 4.20575 4.27717 4.33438 4.42040 4.56960 4.71121 4.83341 4.87951 4.93701 5.06698 5.15967 5.21442 5.28164 5.42767 5.53065 5.70664 5.89383 6.26254 6.39510 6.77159 7.01310 8.19171 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.003289 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.259109 B = 8510.682179 C = 9200.424556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.987 3.013 4 H -0.244 1.244 5 H -0.260 1.260 6 H -0.262 1.262 7 C -1.034 5.034 8 H 0.123 0.877 9 S 2.713 3.287 10 O -1.039 7.039 11 O -1.027 7.027 12 N -1.070 6.070 13 C 0.140 3.860 14 C -0.100 4.100 15 C -0.106 4.106 16 C 0.070 3.930 17 O -0.255 6.255 18 C 0.146 3.854 19 C -0.253 4.253 20 C 0.129 3.871 21 N -0.529 5.529 22 C 0.130 3.870 23 C -0.203 4.203 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.299 0.701 27 H 0.426 0.574 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 -10.590 9.593 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.806 3.194 4 H -0.167 1.167 5 H -0.184 1.184 6 H -0.186 1.186 7 C -1.167 5.167 8 H 0.141 0.859 9 S 2.816 3.184 10 O -1.029 7.029 11 O -1.016 7.016 12 N -0.825 5.825 13 C 0.045 3.955 14 C -0.121 4.121 15 C -0.124 4.124 16 C 0.028 3.972 17 O -0.165 6.165 18 C 0.094 3.906 19 C -0.274 4.274 20 C -0.027 4.027 21 N -0.242 5.242 22 C -0.025 4.025 23 C -0.223 4.223 24 C -0.142 4.142 25 C -0.129 4.129 26 H 0.109 0.891 27 H 0.265 0.735 28 H 0.174 0.826 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.196 0.804 32 H 0.211 0.789 33 H 0.179 0.821 34 H 0.163 0.837 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.214 -11.201 9.974 20.663 hybrid contribution -0.151 1.715 -0.933 1.958 sum 14.062 -9.486 9.041 19.222 Atomic orbital electron populations 1.69987 1.08723 1.32288 1.41383 1.25970 0.95343 1.05255 0.87548 0.85134 0.79776 0.75256 0.79271 1.16685 1.18408 1.18630 1.30837 1.07282 1.12005 1.66618 0.85879 1.00287 0.72573 0.73888 0.71670 1.93336 1.77530 1.88081 1.43970 1.93323 1.70470 1.87903 1.49932 1.53206 1.57926 1.48321 1.23026 1.17613 0.91642 0.99618 0.86615 1.21562 0.92787 0.98164 0.99582 1.21245 1.01668 0.99990 0.89540 1.18730 0.89894 1.02899 0.85715 1.84398 1.66890 1.25766 1.39493 1.19875 0.93312 0.83333 0.94036 1.22458 1.07732 0.93825 1.03358 1.22948 0.91241 0.96513 0.91975 1.67794 1.14262 1.35636 1.06473 1.23165 0.94099 0.86330 0.98956 1.21812 1.03921 1.00802 0.95807 1.21335 0.93156 1.01228 0.98521 1.21500 1.00714 0.98100 0.92559 0.89114 0.73547 0.82572 0.82113 0.83988 0.80388 0.78928 0.82132 0.83746 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.21 13.11 21.45 0.28 -51.93 16 2 C 0.07 3.91 5.46 84.65 0.46 4.37 16 3 Si 0.99 40.30 29.54 68.60 2.03 42.32 16 4 H -0.24 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -1.03 -54.81 9.70 67.73 0.66 -54.16 16 8 H 0.12 5.81 7.81 -2.91 -0.02 5.79 16 9 S 2.71 140.40 5.02 -56.49 -0.28 140.11 16 10 O -1.04 -59.92 18.02 -128.00 -2.31 -62.23 16 11 O -1.03 -59.02 16.88 -128.00 -2.16 -61.18 16 12 N -1.07 -40.01 5.71 -51.27 -0.29 -40.30 16 13 C 0.14 4.72 5.83 38.15 0.22 4.94 16 14 C -0.10 -2.79 9.96 22.39 0.22 -2.56 16 15 C -0.11 -2.59 9.98 22.35 0.22 -2.37 16 16 C 0.07 1.83 4.66 22.51 0.10 1.94 16 17 O -0.26 -6.32 10.01 -34.79 -0.35 -6.67 16 18 C 0.15 3.14 6.62 22.78 0.15 3.29 16 19 C -0.25 -5.10 8.93 22.46 0.20 -4.90 16 20 C 0.13 2.36 11.17 84.60 0.95 3.31 16 21 N -0.53 -10.37 10.36 -196.10 -2.03 -12.40 16 22 C 0.13 2.05 11.17 84.61 0.95 2.99 16 23 C -0.20 -3.49 10.08 22.46 0.23 -3.27 16 24 C -0.12 -3.43 8.60 22.35 0.19 -3.24 16 25 C -0.11 -3.53 9.24 22.39 0.21 -3.33 16 26 H 0.30 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.43 13.07 8.95 -96.74 -0.87 12.20 16 28 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 29 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.14 2.84 6.38 -2.91 -0.02 2.82 16 31 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.13 4.46 7.93 -2.91 -0.02 4.44 16 Total: -1.00 -76.15 329.11 -0.08 -76.22 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.28 Total: 29.05 kcal Atomic # 6 Polarization: -57.75 SS G_CDS: 4.76 Total: -52.99 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -2.04 Total: -104.64 kcal Atomic # 8 Polarization: -125.27 SS G_CDS: -4.82 Total: -130.08 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 140.40 SS G_CDS: -0.28 Total: 140.11 kcal Total: -76.15 -0.08 -76.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.988 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds