Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00236 * 2 1 4 4 H 1.48504 * 109.46677 * 269.99806 * 3 2 1 5 5 H 1.48494 * 109.47083 * 29.99736 * 3 2 1 6 6 H 1.48496 * 109.47154 * 150.00220 * 3 2 1 7 7 C 1.38812 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00528 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99876 * 0.02562 * 7 2 1 10 10 S 1.65604 * 119.99713 * 180.27169 * 9 7 2 11 11 O 1.42104 * 106.39947 * 178.26297 * 10 9 7 12 12 O 1.42093 * 106.40238 * 311.18373 * 10 9 7 13 13 C 1.76195 * 107.21605 * 64.72564 * 10 9 7 14 14 C 1.38274 * 119.94104 * 269.72092 * 13 10 9 15 15 C 1.38140 * 120.05663 * 179.77155 * 14 13 10 16 16 C 1.38754 * 119.93983 * 0.50412 * 15 14 13 17 17 O 1.35899 * 120.05483 * 179.77220 * 16 15 14 18 18 C 1.35735 * 117.99632 * 247.57601 * 17 16 15 19 19 C 1.39289 * 120.84964 * 5.82200 * 18 17 16 20 20 C 1.37963 * 119.08725 * 179.73021 * 19 18 17 21 21 N 1.31964 * 120.82806 * 0.54979 * 20 19 18 22 22 C 1.31970 * 121.86572 * 359.71827 * 21 20 19 23 23 C 1.37971 * 120.82432 * 0.02562 * 22 21 20 24 24 C 1.38746 * 119.88713 * 359.74882 * 16 15 14 25 25 C 1.38142 * 119.94249 * 0.02562 * 24 16 15 26 26 H 0.97001 * 119.99525 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99912 * 359.97438 * 9 7 2 28 28 H 1.07995 * 119.97169 * 0.02562 * 14 13 10 29 29 H 1.07994 * 120.03184 * 180.23930 * 15 14 13 30 30 H 1.08000 * 120.45215 * 359.97438 * 19 18 17 31 31 H 1.08000 * 119.58670 * 180.24918 * 20 19 18 32 32 H 1.07999 * 119.58417 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.45283 * 179.97438 * 23 22 21 34 34 H 1.08002 * 120.03088 * 179.97438 * 24 16 15 35 35 H 1.07996 * 119.96821 * 180.02562 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 16 2.1534 -3.8223 0.0080 11 8 1.1738 -4.8509 0.0476 12 8 3.1360 -3.7237 -1.0137 13 6 3.0296 -3.9107 1.5341 14 6 4.3156 -3.4101 1.6215 15 6 5.0030 -3.4739 2.8181 16 6 4.4058 -4.0504 3.9299 17 8 5.0816 -4.1185 5.1070 18 6 5.4487 -5.3439 5.5609 19 6 5.2480 -6.4828 4.7845 20 6 5.6401 -7.7095 5.2793 21 7 6.1884 -7.8124 6.4752 22 6 6.3899 -6.7577 7.2424 23 6 6.0302 -5.4953 6.8174 24 6 3.1173 -4.5566 3.8381 25 6 2.4325 -4.4861 2.6404 26 1 -0.4849 0.8401 -0.0004 27 1 0.3554 -2.3881 0.0005 28 1 4.7815 -2.9652 0.7548 29 1 6.0059 -3.0793 2.8869 30 1 4.7954 -6.4061 3.8069 31 1 5.4920 -8.5973 4.6824 32 1 6.8413 -6.8845 8.2153 33 1 6.1975 -4.6364 7.4504 34 1 2.6503 -5.0062 4.7020 35 1 1.4293 -4.8797 2.5686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201627543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = -55.906590 kcal Electronic energy + Delta-G solvation = -23622.442809 eV Core-core repulsion = 19905.614995 eV Total energy + Delta-G solvation = -3716.827814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33371 -40.47435 -38.87811 -38.07387 -36.70822 -36.45701 -33.00237 -32.82021 -32.44985 -32.13224 -31.19381 -26.42557 -25.51839 -24.66669 -24.02200 -23.28708 -20.41369 -20.13867 -19.99844 -18.96548 -18.36491 -18.03421 -17.51782 -16.91922 -16.46187 -16.38674 -16.11865 -15.81178 -15.51294 -15.41440 -15.13534 -14.69706 -14.66439 -14.36519 -14.08572 -13.85505 -13.72681 -13.10586 -13.01370 -13.00165 -12.84565 -12.56766 -12.36148 -12.28789 -12.12446 -11.85785 -11.67014 -10.67335 -10.51450 -10.31222 -10.21813 -10.17104 -9.92328 -8.31224 -5.87835 -0.60439 -0.22660 0.03044 0.12331 0.18687 1.49293 1.51672 1.59429 1.64648 2.23433 2.36789 2.68100 2.74232 2.95749 3.22591 3.45702 3.49559 3.55593 3.69372 3.79582 3.84985 4.11332 4.13507 4.18201 4.33340 4.51186 4.64310 4.76996 4.77417 4.83235 4.93741 4.99261 5.05829 5.11460 5.39762 5.60236 5.62823 6.19020 6.75318 6.93549 6.96706 7.32842 8.87048 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.003498 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.703071 B = 8002.553818 C = 8873.780685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.017 4.017 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.311 4.311 8 H 0.111 0.889 9 N -0.973 5.973 10 S 2.673 3.327 11 O -1.007 7.007 12 O -0.991 6.991 13 C -0.672 4.672 14 C -0.010 4.010 15 C -0.141 4.141 16 C 0.122 3.878 17 O -0.257 6.257 18 C 0.144 3.856 19 C -0.256 4.256 20 C 0.131 3.869 21 N -0.525 5.525 22 C 0.133 3.867 23 C -0.198 4.198 24 C -0.157 4.157 25 C -0.014 4.014 26 H 0.271 0.729 27 H 0.407 0.593 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.245 -8.879 13.404 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.219 4.219 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.445 4.445 8 H 0.129 0.871 9 N -0.726 5.726 10 S 2.765 3.235 11 O -0.997 6.997 12 O -0.981 6.981 13 C -0.757 4.757 14 C -0.029 4.029 15 C -0.159 4.159 16 C 0.079 3.921 17 O -0.167 6.167 18 C 0.094 3.906 19 C -0.276 4.276 20 C -0.025 4.025 21 N -0.238 5.238 22 C -0.023 4.023 23 C -0.218 4.218 24 C -0.176 4.176 25 C -0.033 4.033 26 H 0.081 0.919 27 H 0.242 0.758 28 H 0.170 0.830 29 H 0.179 0.821 30 H 0.156 0.844 31 H 0.197 0.803 32 H 0.214 0.786 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.613 -10.078 13.148 20.231 hybrid contribution -0.654 2.010 0.008 2.114 sum 10.960 -8.068 13.156 18.929 Atomic orbital electron populations 1.69791 1.07202 1.28589 1.51430 1.25962 0.96352 1.02248 0.97298 0.85135 0.78532 0.77572 0.78519 1.20122 1.20922 1.17920 1.19490 0.92502 0.83496 1.49003 0.87145 1.51333 1.16742 1.19200 1.85318 1.02876 0.72678 0.72255 0.75722 1.93440 1.60547 1.57434 1.88310 1.93470 1.61969 1.87057 1.55649 1.31447 1.08714 1.12251 1.23328 1.21013 0.91573 0.91974 0.98370 1.21424 1.01974 1.02282 0.90265 1.18960 0.90782 0.98037 0.84275 1.84332 1.69437 1.27413 1.35519 1.19797 0.93608 0.83201 0.94043 1.22464 1.08371 0.93994 1.02818 1.22949 0.90932 0.96896 0.91682 1.67811 1.15375 1.34380 1.06191 1.23235 0.93212 0.86061 0.99791 1.21843 1.04357 1.01426 0.94200 1.21622 0.94232 1.02715 0.99048 1.20943 0.99718 0.92140 0.90513 0.91930 0.75815 0.83010 0.82075 0.84411 0.80341 0.78577 0.81809 0.82817 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.86 13.06 21.65 0.28 -49.58 16 2 C -0.02 -0.85 5.50 84.86 0.47 -0.39 16 3 Si 0.98 39.85 29.55 68.60 2.03 41.88 16 4 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.31 -15.33 9.63 84.03 0.81 -14.52 16 8 H 0.11 5.07 7.82 -2.91 -0.02 5.05 16 9 N -0.97 -45.68 5.75 -54.26 -0.31 -45.99 16 10 S 2.67 110.65 5.70 -56.49 -0.32 110.33 16 11 O -1.01 -43.96 17.28 -128.00 -2.21 -46.17 16 12 O -0.99 -45.02 16.98 -128.00 -2.17 -47.20 16 13 C -0.67 -23.40 5.89 22.29 0.13 -23.27 16 14 C -0.01 -0.32 9.52 22.25 0.21 -0.11 16 15 C -0.14 -3.78 9.99 22.37 0.22 -3.56 16 16 C 0.12 3.24 4.77 22.51 0.11 3.35 16 17 O -0.26 -6.31 10.02 -34.01 -0.34 -6.65 16 18 C 0.14 3.10 6.59 22.77 0.15 3.25 16 19 C -0.26 -5.32 8.87 22.46 0.20 -5.12 16 20 C 0.13 2.45 11.17 84.61 0.95 3.40 16 21 N -0.53 -10.20 10.36 -196.09 -2.03 -12.24 16 22 C 0.13 2.01 11.17 84.61 0.95 2.96 16 23 C -0.20 -3.29 10.08 22.46 0.23 -3.06 16 24 C -0.16 -4.17 8.41 22.37 0.19 -3.98 16 25 C -0.01 -0.43 9.51 22.25 0.21 -0.22 16 26 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.41 19.81 8.02 -96.74 -0.78 19.04 16 28 H 0.15 4.59 7.61 -2.91 -0.02 4.56 16 29 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.14 2.96 6.34 -2.91 -0.02 2.94 16 31 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.15 4.35 7.61 -2.91 -0.02 4.32 16 Total: -1.00 -65.50 327.11 0.11 -65.39 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.37 Total: 31.50 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 4.82 Total: -41.27 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -2.06 Total: -107.81 kcal Atomic # 8 Polarization: -95.30 SS G_CDS: -4.73 Total: -100.02 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 110.65 SS G_CDS: -0.32 Total: 110.33 kcal Total: -65.50 0.11 -65.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201627543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.483 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds