Wall clock time and date at job start Tue Mar 31 2020 12:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00206 * 2 1 4 4 H 1.48504 * 109.46886 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47541 * 119.99822 * 3 2 1 6 6 H 1.48502 * 109.47041 * 239.99977 * 3 2 1 7 7 C 1.37874 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99625 * 181.82716 * 7 2 1 9 9 C 1.50698 * 120.00585 * 1.82777 * 7 2 1 10 10 H 1.09006 * 109.46792 * 329.63016 * 9 7 2 11 11 O 1.42903 * 109.47293 * 209.63474 * 9 7 2 12 12 C 1.36087 * 117.00330 * 84.59333 * 11 9 7 13 13 C 1.35112 * 120.55766 * 354.48199 * 12 11 9 14 14 O 1.34014 * 120.85622 * 180.02562 * 13 12 11 15 15 C 1.33773 * 122.06472 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.48981 * 180.02562 * 15 14 13 17 17 Cl 1.80303 * 109.47040 * 270.00222 * 16 15 14 18 18 C 1.34851 * 121.02835 * 359.97438 * 15 14 13 19 19 C 1.41728 * 119.01847 * 359.81303 * 18 15 14 20 20 O 1.22162 * 120.92814 * 180.20789 * 19 18 15 21 21 C 1.50699 * 109.47357 * 89.62697 * 9 7 2 22 22 C 1.38239 * 119.99729 * 81.00876 * 21 9 7 23 23 C 1.38225 * 120.00122 * 179.81196 * 22 21 9 24 24 C 1.38239 * 119.99935 * 0.39880 * 23 22 21 25 25 C 1.38234 * 120.00001 * 359.85175 * 24 23 22 26 26 C 1.38230 * 120.00573 * 261.28516 * 21 9 7 27 27 H 0.96994 * 119.99910 * 175.82433 * 1 2 3 28 28 H 1.08002 * 119.57167 * 359.97438 * 13 12 11 29 29 H 1.09005 * 109.47233 * 29.99691 * 16 15 14 30 30 H 1.08999 * 109.47425 * 149.99727 * 16 15 14 31 31 H 1.07996 * 120.48718 * 180.02562 * 18 15 14 32 32 H 1.08004 * 120.00134 * 359.97438 * 22 21 9 33 33 H 1.08003 * 120.00560 * 180.23250 * 23 22 21 34 34 H 1.07998 * 119.99860 * 179.83764 * 24 23 22 35 35 H 1.07992 * 120.00111 * 179.97438 * 25 24 23 36 36 H 1.08006 * 119.99635 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1943 0.0304 9 6 1.2516 -2.4989 -0.0405 10 1 0.2880 -2.3780 0.4546 11 8 2.0091 -3.5073 0.6313 12 6 1.8728 -3.5847 1.9831 13 6 1.1406 -2.6680 2.6533 14 8 1.0028 -2.7382 3.9845 15 6 1.5755 -3.7071 4.7076 16 6 1.3817 -3.7306 6.2019 17 17 2.6904 -2.7752 6.9928 18 6 2.3227 -4.6637 4.1202 19 6 2.4942 -4.6350 2.7136 20 8 3.1608 -5.4864 2.1449 21 6 1.0318 -2.9072 -1.4744 22 6 2.0446 -3.5318 -2.1781 23 6 1.8418 -3.9099 -3.4921 24 6 0.6290 -3.6560 -4.1051 25 6 -0.3819 -3.0267 -3.4030 26 6 -0.1804 -2.6521 -2.0878 27 1 -0.4850 -0.8378 -0.0612 28 1 0.6608 -1.8679 2.1092 29 1 0.4136 -3.2951 6.4497 30 1 1.4184 -4.7605 6.5569 31 1 2.7806 -5.4421 4.7124 32 1 2.9934 -3.7268 -1.7004 33 1 2.6317 -4.4013 -4.0408 34 1 0.4715 -3.9490 -5.1325 35 1 -1.3292 -2.8280 -3.8820 36 1 -0.9702 -2.1605 -1.5392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228651256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:05 Heat of formation + Delta-G solvation = -52.481907 kcal Electronic energy + Delta-G solvation = -24136.836413 eV Core-core repulsion = 20385.820647 eV Total energy + Delta-G solvation = -3751.015766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70723 -39.09077 -38.30561 -37.31237 -36.47762 -33.67617 -33.30505 -31.53016 -30.49467 -30.20548 -27.59358 -26.82993 -24.34741 -23.18585 -22.50652 -21.85084 -20.66833 -18.39913 -18.23528 -17.21154 -16.59034 -16.35897 -16.05433 -15.39514 -14.70126 -14.64518 -14.44695 -14.09074 -14.01983 -13.94521 -13.89702 -13.58857 -13.47257 -13.29396 -12.72302 -12.37727 -12.06107 -11.94511 -11.46435 -11.04747 -10.99572 -10.83189 -10.73637 -10.47853 -10.31732 -10.03710 -9.48727 -9.39508 -9.12889 -8.79654 -8.26171 -7.95764 -7.59409 -6.76662 -4.57307 0.70328 1.50976 2.04012 2.07747 2.07805 2.50422 3.27652 3.29709 3.47575 3.71651 3.77786 4.06820 4.23160 4.51223 4.54321 4.79064 4.92217 4.92944 4.98151 5.49341 5.52090 5.58376 5.62815 5.66942 5.82886 5.92626 6.08335 6.23666 6.29264 6.47216 6.64547 6.71466 7.09544 7.13746 7.31330 7.39712 7.47570 7.68154 7.72626 8.02444 8.31252 8.38166 9.13139 10.55442 Molecular weight = 320.06amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.004445 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.144612 B = 6297.639597 C = 7700.275837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.034 3.966 3 Si 1.068 2.932 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.611 4.611 8 H 0.068 0.932 9 C 0.217 3.783 10 H 0.043 0.957 11 O -0.285 6.285 12 C -0.018 4.018 13 C -0.021 4.021 14 O -0.193 6.193 15 C 0.111 3.889 16 C 0.013 3.987 17 Cl -0.148 7.148 18 C -0.290 4.290 19 C 0.405 3.595 20 O -0.479 6.479 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.115 4.115 27 H 0.269 0.731 28 H 0.216 0.784 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -5.619 8.173 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.648 4.648 8 H 0.086 0.914 9 C 0.163 3.837 10 H 0.061 0.939 11 O -0.199 6.199 12 C -0.067 4.067 13 C -0.086 4.086 14 O -0.095 6.095 15 C 0.061 3.939 16 C -0.049 4.049 17 Cl -0.121 7.121 18 C -0.311 4.311 19 C 0.294 3.706 20 O -0.365 6.365 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.146 4.146 24 C -0.161 4.161 25 C -0.142 4.142 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.491 -4.258 7.964 9.153 hybrid contribution 0.247 -1.345 -0.331 1.407 sum -1.244 -5.604 7.633 9.550 Atomic orbital electron populations 1.70939 1.06713 1.30761 1.44167 1.25979 0.96263 1.02846 0.92212 0.83524 0.75126 0.74660 0.77229 1.20284 1.20856 1.20898 1.22288 0.95754 0.90173 1.56612 0.91401 1.19342 0.92081 0.85999 0.86276 0.93938 1.86157 1.65425 1.55498 1.12775 1.20768 1.00790 0.97767 0.87389 1.24322 1.03991 1.02077 0.78181 1.82862 1.61967 1.44740 1.19970 1.22100 0.92155 0.87231 0.92442 1.23145 0.94879 1.00969 0.85928 1.98776 1.55539 1.76250 1.81547 1.22583 1.07613 1.04143 0.96808 1.17152 0.80922 0.84333 0.88200 1.90786 1.35189 1.37762 1.72752 1.20088 0.92780 0.94307 0.96860 1.20926 0.99150 0.97955 0.93767 1.21033 0.97138 1.01207 0.95231 1.20917 0.94206 1.01729 0.99283 1.20942 0.98771 0.99880 0.94618 1.20900 0.96852 1.00300 0.95310 0.91887 0.76815 0.86054 0.84990 0.82326 0.86235 0.86951 0.87115 0.86873 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 13.62 55.43 0.75 -22.38 16 2 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 3 Si 1.07 23.27 29.90 -169.99 -5.08 18.19 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.61 -15.63 7.71 -34.44 -0.27 -15.89 16 8 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.22 5.15 1.67 -29.04 -0.05 5.10 16 10 H 0.04 1.01 4.62 -51.93 -0.24 0.77 16 11 O -0.29 -6.81 8.94 -35.04 -0.31 -7.13 16 12 C -0.02 -0.39 6.63 -39.16 -0.26 -0.65 16 13 C -0.02 -0.41 10.11 29.62 0.30 -0.11 16 14 O -0.19 -3.05 9.73 7.88 0.08 -2.98 16 15 C 0.11 1.44 6.33 -35.51 -0.22 1.22 16 16 C 0.01 0.11 6.96 36.00 0.25 0.36 16 17 Cl -0.15 -1.56 29.13 -51.86 -1.51 -3.07 16 18 C -0.29 -4.28 9.61 -39.45 -0.38 -4.66 16 19 C 0.41 8.07 6.81 -36.72 -0.25 7.82 16 20 O -0.48 -11.00 17.74 -10.25 -0.18 -11.19 16 21 C -0.04 -0.90 4.96 -104.62 -0.52 -1.42 16 22 C -0.10 -2.14 9.36 -39.59 -0.37 -2.51 16 23 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 24 C -0.14 -2.46 10.05 -39.58 -0.40 -2.85 16 25 C -0.12 -2.24 10.05 -39.59 -0.40 -2.64 16 26 C -0.12 -2.40 9.45 -39.59 -0.37 -2.78 16 27 H 0.27 6.79 5.11 -40.82 -0.21 6.58 16 28 H 0.22 4.48 5.60 -52.49 -0.29 4.18 16 29 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.13 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.12 2.62 7.75 -52.48 -0.41 2.21 16 33 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.12 2.44 6.82 -52.48 -0.36 2.08 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -30.45 331.74 -7.94 -38.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.25 Total: 6.17 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.43 Total: -21.00 kcal Atomic # 7 Polarization: -23.13 SS G_CDS: 0.75 Total: -22.38 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.42 Total: -21.29 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.08 Total: 18.19 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.51 Total: -3.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.45 -7.94 -38.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228651256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.097 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds