Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00206 * 2 1 4 4 H 1.48504 * 109.46886 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47541 * 119.99822 * 3 2 1 6 6 H 1.48502 * 109.47041 * 239.99977 * 3 2 1 7 7 C 1.37874 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99625 * 181.82716 * 7 2 1 9 9 C 1.50698 * 120.00585 * 1.82777 * 7 2 1 10 10 H 1.09006 * 109.46792 * 329.63016 * 9 7 2 11 11 O 1.42903 * 109.47293 * 209.63474 * 9 7 2 12 12 C 1.36087 * 117.00330 * 84.59333 * 11 9 7 13 13 C 1.35112 * 120.55766 * 354.48199 * 12 11 9 14 14 O 1.34014 * 120.85622 * 180.02562 * 13 12 11 15 15 C 1.33773 * 122.06472 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.48981 * 180.02562 * 15 14 13 17 17 Cl 1.80303 * 109.47040 * 270.00222 * 16 15 14 18 18 C 1.34851 * 121.02835 * 359.97438 * 15 14 13 19 19 C 1.41728 * 119.01847 * 359.81303 * 18 15 14 20 20 O 1.22162 * 120.92814 * 180.20789 * 19 18 15 21 21 C 1.50699 * 109.47357 * 89.62697 * 9 7 2 22 22 C 1.38239 * 119.99729 * 81.00876 * 21 9 7 23 23 C 1.38225 * 120.00122 * 179.81196 * 22 21 9 24 24 C 1.38239 * 119.99935 * 0.39880 * 23 22 21 25 25 C 1.38234 * 120.00001 * 359.85175 * 24 23 22 26 26 C 1.38230 * 120.00573 * 261.28516 * 21 9 7 27 27 H 0.96994 * 119.99910 * 175.82433 * 1 2 3 28 28 H 1.08002 * 119.57167 * 359.97438 * 13 12 11 29 29 H 1.09005 * 109.47233 * 29.99691 * 16 15 14 30 30 H 1.08999 * 109.47425 * 149.99727 * 16 15 14 31 31 H 1.07996 * 120.48718 * 180.02562 * 18 15 14 32 32 H 1.08004 * 120.00134 * 359.97438 * 22 21 9 33 33 H 1.08003 * 120.00560 * 180.23250 * 23 22 21 34 34 H 1.07998 * 119.99860 * 179.83764 * 24 23 22 35 35 H 1.07992 * 120.00111 * 179.97438 * 25 24 23 36 36 H 1.08006 * 119.99635 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1943 0.0304 9 6 1.2516 -2.4989 -0.0405 10 1 0.2880 -2.3780 0.4546 11 8 2.0091 -3.5073 0.6313 12 6 1.8728 -3.5847 1.9831 13 6 1.1406 -2.6680 2.6533 14 8 1.0028 -2.7382 3.9845 15 6 1.5755 -3.7071 4.7076 16 6 1.3817 -3.7306 6.2019 17 17 2.6904 -2.7752 6.9928 18 6 2.3227 -4.6637 4.1202 19 6 2.4942 -4.6350 2.7136 20 8 3.1608 -5.4864 2.1449 21 6 1.0318 -2.9072 -1.4744 22 6 2.0446 -3.5318 -2.1781 23 6 1.8418 -3.9099 -3.4921 24 6 0.6290 -3.6560 -4.1051 25 6 -0.3819 -3.0267 -3.4030 26 6 -0.1804 -2.6521 -2.0878 27 1 -0.4850 -0.8378 -0.0612 28 1 0.6608 -1.8679 2.1092 29 1 0.4136 -3.2951 6.4497 30 1 1.4184 -4.7605 6.5569 31 1 2.7806 -5.4421 4.7124 32 1 2.9934 -3.7268 -1.7004 33 1 2.6317 -4.4013 -4.0408 34 1 0.4715 -3.9490 -5.1325 35 1 -1.3292 -2.8280 -3.8820 36 1 -0.9702 -2.1605 -1.5392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228651256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -68.566830 kcal Electronic energy + Delta-G solvation = -24137.533907 eV Core-core repulsion = 20385.820647 eV Total energy + Delta-G solvation = -3751.713260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.13604 -40.70900 -39.84852 -38.92931 -37.29410 -35.54017 -34.48248 -33.12415 -32.05694 -31.72729 -28.69943 -28.59916 -26.04447 -24.83140 -23.82385 -23.36963 -22.25287 -20.07555 -19.71224 -18.93557 -17.94225 -17.73672 -17.55809 -16.89834 -16.26919 -16.10357 -15.92138 -15.69059 -15.46881 -15.21245 -15.04095 -14.97436 -14.85223 -14.72055 -14.24788 -14.04193 -13.61298 -13.58462 -13.09631 -12.74914 -12.42838 -12.03431 -12.00788 -11.88366 -11.71297 -11.54188 -11.13627 -10.97218 -10.72695 -10.56507 -9.79550 -9.55286 -9.27801 -8.75898 -6.58877 -0.51375 -0.01824 0.50634 0.53493 1.06669 1.35771 1.49558 1.53460 1.74823 2.17122 2.29747 2.43161 2.90359 3.00327 3.04975 3.31786 3.50911 3.86625 3.96731 4.12294 4.18903 4.19931 4.27108 4.29603 4.33681 4.48052 4.51027 4.73814 4.75290 4.98052 5.11749 5.17853 5.53296 5.60146 5.61075 5.77798 5.84178 5.97530 6.15888 6.27378 6.37493 6.63690 7.17523 8.55369 Molecular weight = 320.06amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.004445 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.144612 B = 6297.639597 C = 7700.275837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 1.104 2.896 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.621 4.621 8 H 0.042 0.958 9 C 0.224 3.776 10 H 0.033 0.967 11 O -0.311 6.311 12 C -0.060 4.060 13 C 0.006 3.994 14 O -0.188 6.188 15 C 0.128 3.872 16 C 0.019 3.981 17 Cl -0.162 7.162 18 C -0.290 4.290 19 C 0.395 3.605 20 O -0.528 6.528 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.134 4.134 27 H 0.265 0.735 28 H 0.197 0.803 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.195 0.805 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -5.904 8.712 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.201 4.201 3 Si 0.925 3.075 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.658 4.658 8 H 0.061 0.939 9 C 0.170 3.830 10 H 0.051 0.949 11 O -0.226 6.226 12 C -0.108 4.108 13 C -0.060 4.060 14 O -0.090 6.090 15 C 0.078 3.922 16 C -0.042 4.042 17 Cl -0.135 7.135 18 C -0.310 4.310 19 C 0.288 3.712 20 O -0.417 6.417 21 C -0.072 4.072 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.213 0.787 29 H 0.168 0.832 30 H 0.195 0.805 31 H 0.212 0.788 32 H 0.117 0.883 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.362 -4.545 8.535 9.954 hybrid contribution 0.440 -1.307 -0.438 1.447 sum -1.922 -5.852 8.097 10.173 Atomic orbital electron populations 1.70987 1.07028 1.30629 1.45361 1.26971 0.96463 1.05095 0.91522 0.83078 0.74542 0.72062 0.77777 1.19715 1.19705 1.20460 1.22298 0.94536 0.91732 1.57238 0.93933 1.19191 0.91176 0.85466 0.87207 0.94901 1.86116 1.66190 1.55810 1.14447 1.21246 1.03045 0.99696 0.86817 1.23928 1.02032 1.00396 0.79609 1.82899 1.62012 1.45815 1.18239 1.23003 0.89694 0.85059 0.94421 1.23632 0.95383 1.03626 0.81559 1.98789 1.56505 1.76889 1.81350 1.22664 1.08448 1.05863 0.94074 1.17738 0.80002 0.83212 0.90251 1.90753 1.37688 1.39345 1.73964 1.20168 0.94281 0.96358 0.96431 1.20937 0.98288 0.99606 0.95560 1.21403 0.98771 1.00191 0.93851 1.21423 0.92813 0.99626 1.01025 1.21370 1.00557 0.98531 0.93317 1.20992 0.96073 1.01247 0.96899 0.92322 0.78696 0.83193 0.80547 0.78818 0.88340 0.83825 0.82550 0.83430 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.32 13.62 21.45 0.29 -48.03 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 1.10 47.61 29.90 68.60 2.05 49.67 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.62 -33.59 7.71 25.60 0.20 -33.39 16 8 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.22 11.36 1.67 29.10 0.05 11.41 16 10 H 0.03 1.70 4.62 -2.38 -0.01 1.68 16 11 O -0.31 -16.07 8.94 -80.18 -0.72 -16.79 16 12 C -0.06 -2.70 6.63 22.54 0.15 -2.55 16 13 C 0.01 0.24 10.11 67.10 0.68 0.92 16 14 O -0.19 -5.78 9.73 5.27 0.05 -5.73 16 15 C 0.13 3.04 6.33 24.91 0.16 3.20 16 16 C 0.02 0.24 6.96 71.23 0.50 0.74 16 17 Cl -0.16 -2.95 29.13 -2.72 -0.08 -3.03 16 18 C -0.29 -8.14 9.61 22.35 0.21 -7.93 16 19 C 0.40 16.30 6.81 24.13 0.16 16.46 16 20 O -0.53 -25.50 17.74 8.51 0.15 -25.35 16 21 C -0.07 -3.42 4.96 -19.87 -0.10 -3.52 16 22 C -0.13 -5.60 9.36 22.27 0.21 -5.40 16 23 C -0.12 -4.40 10.05 22.27 0.22 -4.18 16 24 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16 25 C -0.12 -4.11 10.05 22.27 0.22 -3.89 16 26 C -0.13 -5.70 9.45 22.27 0.21 -5.49 16 27 H 0.27 14.00 5.11 -92.71 -0.47 13.52 16 28 H 0.20 8.67 5.60 -2.91 -0.02 8.65 16 29 H 0.15 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.18 0.77 8.06 -2.39 -0.02 0.75 16 31 H 0.19 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.10 4.67 7.75 -2.91 -0.02 4.65 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.11 4.72 6.82 -2.91 -0.02 4.70 16 Total: -1.00 -72.12 331.74 6.73 -65.39 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.42 Total: 20.79 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.56 Total: -36.91 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.29 Total: -48.03 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.51 Total: -47.87 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.05 Total: 49.67 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.08 Total: -3.03 kcal Total: -72.12 6.73 -65.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228651256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.174 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds