Wall clock time and date at job start Tue Mar 31 2020 12:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 119.99935 * 2 1 4 4 H 1.48500 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46989 * 300.00084 * 3 2 1 6 6 H 1.48501 * 109.46712 * 59.99956 * 3 2 1 7 7 C 1.38625 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00082 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.35790 * 116.99669 * 185.48071 * 9 7 2 11 11 C 1.38903 * 119.99415 * 186.24580 * 10 9 7 12 12 C 1.38004 * 120.00026 * 179.72486 * 11 10 9 13 13 C 1.38933 * 119.99681 * 0.57163 * 12 11 10 14 14 N 1.39962 * 120.00023 * 179.68240 * 13 12 11 15 15 C 1.34777 * 119.99630 * 224.65371 * 14 13 12 16 16 S 1.71202 * 120.00200 * 355.96205 * 15 14 13 17 17 N 1.34776 * 119.99869 * 175.96011 * 15 14 13 18 18 C 1.46503 * 119.99904 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46839 * 179.97438 * 18 17 15 20 20 F 1.39897 * 109.46922 * 60.00258 * 19 18 17 21 21 F 1.39905 * 109.46961 * 179.97438 * 19 18 17 22 22 F 1.39898 * 109.47251 * 300.00085 * 19 18 17 23 23 C 1.38927 * 119.99003 * 359.69851 * 13 12 11 24 24 C 1.37994 * 120.00336 * 0.02562 * 23 13 12 25 25 H 0.97001 * 120.00351 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00061 * 359.97438 * 11 10 9 27 27 H 1.07997 * 119.99994 * 180.24405 * 12 11 10 28 28 H 0.96999 * 120.00543 * 44.65596 * 14 13 12 29 29 H 0.96997 * 120.00322 * 359.97438 * 17 15 14 30 30 H 1.08996 * 109.47277 * 299.99525 * 18 17 15 31 31 H 1.09002 * 109.46998 * 60.00331 * 18 17 15 32 32 H 1.08005 * 119.99737 * 179.97438 * 23 13 12 33 33 H 1.07999 * 120.00302 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0696 -3.5040 0.1166 11 6 1.4554 -4.7438 -0.0064 12 6 2.2031 -5.8984 0.1060 13 6 3.5679 -5.8207 0.3539 14 7 4.3250 -6.9917 0.4744 15 6 5.2260 -7.1121 1.4694 16 16 5.5189 -5.7949 2.5231 17 7 5.8965 -8.2695 1.6350 18 6 6.8756 -8.4005 2.7170 19 6 7.4879 -9.8022 2.6835 20 9 8.1226 -10.0046 1.4533 21 9 8.4233 -9.9272 3.7164 22 9 6.4784 -10.7563 2.8501 23 6 4.1809 -4.5807 0.4824 24 6 3.4341 -3.4262 0.3644 25 1 -0.4851 0.8400 -0.0004 26 1 0.3936 -4.8043 -0.1939 27 1 1.7262 -6.8623 0.0064 28 1 4.2013 -7.7166 -0.1581 29 1 5.7303 -9.0159 1.0383 30 1 7.6619 -7.6569 2.5874 31 1 6.3810 -8.2432 3.6755 32 1 5.2418 -4.5202 0.6756 33 1 3.9106 -2.4622 0.4648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338176934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:39 Heat of formation + Delta-G solvation = -146.180640 kcal Electronic energy + Delta-G solvation = -23310.993673 eV Core-core repulsion = 19048.394542 eV Total energy + Delta-G solvation = -4262.599131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.055 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.28211 -48.78348 -48.76336 -41.22883 -40.11631 -38.38502 -36.01763 -34.19590 -31.87748 -31.20850 -29.10939 -27.25236 -25.51851 -24.57206 -23.57490 -22.86171 -20.37163 -19.95726 -19.77793 -19.74771 -19.24517 -18.46630 -17.93743 -16.99268 -16.60508 -16.27373 -16.14080 -16.02843 -15.53255 -15.46828 -15.45171 -15.23114 -15.17405 -14.89441 -14.88764 -14.69865 -14.29487 -13.98132 -13.47963 -13.24779 -13.08600 -12.95599 -12.56312 -12.43278 -12.31445 -12.08913 -11.28760 -10.98326 -10.58641 -9.91432 -9.22919 -8.85062 -8.46470 -8.26636 -6.12629 -0.05247 0.55409 0.64451 0.83714 1.10640 1.37599 1.45091 1.55330 1.55964 2.19220 2.31068 2.52176 2.82327 2.87261 3.08330 3.17958 3.51429 4.03505 4.11690 4.17839 4.23927 4.35329 4.52149 4.69755 4.79048 5.06302 5.14217 5.33091 5.44779 5.53734 5.72762 5.75385 6.04509 6.14836 6.30689 6.99132 7.77356 8.76445 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.002493 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.987307 B =11228.902151 C =11812.218711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.409 4.409 8 H 0.100 0.900 9 O -0.224 6.224 10 C 0.128 3.872 11 C -0.198 4.198 12 C -0.050 4.050 13 C 0.030 3.970 14 N -0.585 5.585 15 C 0.584 3.416 16 S -0.702 6.702 17 N -0.665 5.665 18 C 0.088 3.912 19 C 0.461 3.539 20 F -0.179 7.179 21 F -0.171 7.171 22 F -0.179 7.179 23 C -0.016 4.016 24 C -0.240 4.240 25 H 0.273 0.727 26 H 0.127 0.873 27 H 0.165 0.835 28 H 0.428 0.572 29 H 0.422 0.578 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.715 -23.178 1.013 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.117 0.883 9 O -0.130 6.130 10 C 0.076 3.924 11 C -0.218 4.218 12 C -0.070 4.070 13 C -0.063 4.063 14 N -0.210 5.210 15 C 0.222 3.778 16 S -0.574 6.574 17 N -0.298 5.298 18 C -0.038 4.038 19 C 0.406 3.594 20 F -0.161 7.161 21 F -0.152 7.152 22 F -0.161 7.161 23 C -0.038 4.038 24 C -0.261 4.261 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.182 0.818 28 H 0.270 0.730 29 H 0.263 0.737 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.583 -22.188 1.773 26.610 hybrid contribution -0.034 -0.430 -0.816 0.923 sum 14.548 -22.617 0.957 26.910 Atomic orbital electron populations 1.70178 1.07877 1.28760 1.48707 1.26517 0.96825 1.02591 0.95860 0.84577 0.78266 0.75115 0.78598 1.17719 1.19063 1.19496 1.21818 0.92452 0.81446 1.52803 0.88281 1.83949 1.35847 1.12623 1.80590 1.20028 0.91319 0.88154 0.92886 1.20216 1.00584 0.89301 1.11702 1.20712 0.90478 0.98358 0.97444 1.16928 0.90420 0.84206 1.14738 1.41698 1.34678 1.18144 1.26444 1.21602 0.81887 0.88759 0.85534 1.93971 1.80800 1.33504 1.49100 1.44111 1.39909 1.12432 1.33389 1.22896 0.94610 0.92203 0.94052 1.20347 0.76840 0.88286 0.73957 1.93247 1.83019 1.95980 1.43829 1.93252 1.66477 1.96400 1.59078 1.93248 1.60032 1.67649 1.95165 1.21114 1.00933 0.90302 0.91442 1.20996 0.93785 0.99332 1.11997 0.91786 0.85492 0.81792 0.72990 0.73706 0.84581 0.84751 0.84312 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 2 C -0.02 -1.14 5.49 84.82 0.47 -0.67 16 3 Si 1.01 43.37 29.55 68.60 2.03 45.40 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.41 -23.84 9.43 67.91 0.64 -23.20 16 8 H 0.10 5.40 5.31 -2.91 -0.02 5.39 16 9 O -0.22 -13.27 9.76 -23.02 -0.22 -13.50 16 10 C 0.13 6.19 6.65 22.59 0.15 6.34 16 11 C -0.20 -7.72 9.98 22.37 0.22 -7.50 16 12 C -0.05 -1.44 9.96 22.38 0.22 -1.21 16 13 C 0.03 0.88 5.95 38.17 0.23 1.10 16 14 N -0.59 -10.78 5.32 -189.86 -1.01 -11.79 16 15 C 0.58 11.80 7.85 179.05 1.40 13.20 16 16 S -0.70 -22.86 24.77 -56.49 -1.40 -24.26 16 17 N -0.67 -7.33 5.42 -350.16 -1.90 -9.23 16 18 C 0.09 0.93 5.10 86.38 0.44 1.37 16 19 C 0.46 4.33 3.11 71.98 0.22 4.56 16 20 F -0.18 -1.84 17.18 44.97 0.77 -1.07 16 21 F -0.17 -2.01 17.32 44.97 0.78 -1.24 16 22 F -0.18 -1.88 17.18 44.97 0.77 -1.11 16 23 C -0.02 -0.58 7.86 22.38 0.18 -0.40 16 24 C -0.24 -10.74 9.12 22.37 0.20 -10.54 16 25 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 27 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.43 3.82 8.84 -92.71 -0.82 3.00 16 29 H 0.42 1.92 8.38 -92.71 -0.78 1.14 16 30 H 0.14 1.51 7.99 -2.39 -0.02 1.50 16 31 H 0.13 1.56 7.99 -2.39 -0.02 1.54 16 32 H 0.14 5.04 6.02 -9.30 -0.06 4.99 16 33 H 0.11 5.41 5.72 -2.91 -0.02 5.40 16 Total: -1.00 -78.23 316.67 4.07 -74.16 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -0.42 Total: 15.27 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.38 Total: -16.95 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.61 Total: -76.71 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.22 Total: -13.50 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 2.32 Total: -3.41 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -22.86 SS G_CDS: -1.40 Total: -24.26 kcal Total: -78.23 4.07 -74.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338176934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.022 kcal (2) G-P(sol) polarization free energy of solvation -78.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds