Wall clock time and date at job start Tue Mar 31 2020 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31296 * 118.90093 * 2 1 4 4 C 1.34054 * 120.97929 * 180.24673 * 3 2 1 5 5 S 1.75519 * 131.23363 * 179.81640 * 4 3 2 6 6 C 1.75585 * 92.46736 * 179.69223 * 5 4 3 7 7 C 1.33407 * 111.37768 * 0.03090 * 6 5 4 8 8 C 1.39291 * 119.15553 * 359.50529 * 4 3 2 9 9 C 1.42002 * 117.65361 * 0.25382 * 8 4 3 10 10 S 1.76203 * 120.57927 * 179.97438 * 9 8 4 11 11 C 1.81000 * 99.99888 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00554 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99685 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00105 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99987 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47319 * 89.99664 * 16 14 12 18 18 H 1.48496 * 109.47110 * 209.99800 * 16 14 12 19 19 H 1.48496 * 109.46910 * 329.99908 * 16 14 12 20 20 N 1.32057 * 118.89763 * 179.74703 * 2 1 3 21 21 C 1.52321 * 123.38604 * 180.02562 * 7 6 5 22 22 C 1.52961 * 108.86393 * 342.80115 * 21 7 6 23 23 C 1.53178 * 109.09679 * 50.75234 * 22 21 7 24 24 C 1.51893 * 124.29444 * 180.02562 * 6 5 4 25 25 H 1.09006 * 109.47090 * 270.25699 * 1 2 3 26 26 H 1.09003 * 109.47223 * 30.25265 * 1 2 3 27 27 H 1.09000 * 109.47647 * 150.25988 * 1 2 3 28 28 H 1.09005 * 109.47256 * 300.00187 * 11 10 9 29 29 H 1.09002 * 109.46886 * 59.99974 * 11 10 9 30 30 H 0.97006 * 119.99872 * 179.97438 * 15 14 12 31 31 H 1.08993 * 109.57083 * 222.98410 * 21 7 6 32 32 H 1.09005 * 109.57525 * 102.61308 * 21 7 6 33 33 H 1.08994 * 109.53386 * 290.86399 * 22 21 7 34 34 H 1.09002 * 109.58986 * 170.67659 * 22 21 7 35 35 H 1.08996 * 109.55960 * 169.77619 * 23 22 21 36 36 H 1.09003 * 109.65734 * 49.49634 * 23 22 21 37 37 H 1.08993 * 109.57766 * 283.12287 * 24 6 5 38 38 H 1.09006 * 109.57497 * 43.51992 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1415 1.1494 0.0000 4 6 3.4811 1.1981 -0.0049 5 16 4.5894 2.5591 -0.0105 6 6 5.9974 1.5101 -0.0051 7 6 5.6452 0.2234 -0.0001 8 6 4.2034 0.0071 0.0004 9 6 3.4697 -1.2087 0.0053 10 16 4.3053 -2.7600 0.0115 11 6 2.8851 -3.8820 0.0168 12 6 3.3717 -5.3082 0.0220 13 1 4.4312 -5.5173 0.0225 14 6 2.4642 -6.3462 0.0262 15 7 1.1739 -6.0916 0.0261 16 14 3.0673 -8.1141 0.0333 17 1 3.2272 -8.5770 1.4353 18 1 2.0796 -8.9769 -0.6632 19 1 4.3747 -8.1939 -0.6664 20 7 2.1451 -1.1561 0.0051 21 6 6.6506 -0.9209 0.0060 22 6 8.0163 -0.3815 -0.4226 23 6 8.3520 0.8558 0.4157 24 6 7.4334 2.0051 -0.0060 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8923 -0.5098 28 1 2.2818 -3.7002 0.9064 29 1 2.2811 -3.7077 -0.8736 30 1 0.5355 -6.8219 0.0287 31 1 6.3281 -1.6939 -0.6914 32 1 6.7219 -1.3390 1.0101 33 1 7.9861 -0.1097 -1.4776 34 1 8.7771 -1.1460 -0.2649 35 1 9.3911 1.1390 0.2485 36 1 8.1993 0.6354 1.4722 37 1 7.7035 2.3403 -1.0073 38 1 7.5355 2.8311 0.6979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031944853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:17 Heat of formation + Delta-G solvation = 33.282557 kcal Electronic energy + Delta-G solvation = -21656.636783 eV Core-core repulsion = 18522.262466 eV Total energy + Delta-G solvation = -3134.374317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70740 -38.44404 -34.42737 -33.38000 -33.16438 -30.99330 -30.72327 -28.61954 -27.35806 -25.44316 -23.63594 -23.19128 -22.45517 -21.55878 -18.85203 -18.03049 -17.49625 -16.57133 -16.22908 -15.54612 -15.33622 -14.80821 -14.61127 -13.96437 -13.84062 -13.71549 -13.16321 -13.01748 -12.86827 -12.82568 -12.59774 -12.38308 -12.26177 -12.18506 -11.53688 -11.33462 -11.12168 -10.96703 -10.92508 -10.88817 -10.72427 -10.49629 -10.40347 -10.37943 -9.64235 -9.17886 -8.86270 -8.80801 -8.65443 -8.06123 -7.02387 -6.23966 -4.31730 0.57561 1.11282 1.20031 1.83949 2.13523 2.18979 3.21731 3.27291 3.28292 3.38341 3.83254 4.22969 4.29414 4.36936 4.59586 4.75508 4.78332 4.84461 4.98122 5.12707 5.20832 5.26432 5.38036 5.45547 5.58497 5.71577 5.72288 5.78258 5.82983 5.92643 5.97515 6.04674 6.13268 6.23609 6.47992 6.51746 7.06505 7.08356 7.20094 7.64462 7.90287 8.29222 8.69427 9.32166 10.86427 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.004345 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.331020 B = 6442.013571 C = 8349.701046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.349 3.651 3 N -0.517 5.517 4 C 0.107 3.893 5 S 0.136 5.864 6 C -0.189 4.189 7 C -0.046 4.046 8 C -0.180 4.180 9 C 0.221 3.779 10 S -0.048 6.048 11 C 0.062 3.938 12 C -0.527 4.527 13 H 0.066 0.934 14 C 0.071 3.929 15 N -0.883 5.883 16 Si 0.905 3.095 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 N -0.519 5.519 21 C -0.068 4.068 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.041 4.041 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 15.583 -0.085 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 N -0.238 5.238 4 C -0.144 4.144 5 S 0.397 5.603 6 C -0.305 4.305 7 C -0.058 4.058 8 C -0.199 4.199 9 C -0.044 4.044 10 S 0.195 5.805 11 C -0.084 4.084 12 C -0.567 4.567 13 H 0.084 0.916 14 C -0.134 4.134 15 N -0.520 5.520 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 N -0.240 5.240 21 C -0.108 4.108 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.080 4.080 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.713 16.745 -0.092 19.359 hybrid contribution -0.414 -2.080 0.039 2.121 sum 9.298 14.666 -0.053 17.365 Atomic orbital electron populations 1.20561 0.85333 1.04188 1.03938 1.23215 0.97913 0.82604 0.88778 1.67945 1.05971 1.30107 1.19764 1.23422 0.94651 0.96530 0.99833 1.83831 0.92779 1.04986 1.78698 1.24306 0.98889 0.95476 1.11874 1.20163 0.90962 0.94512 1.00181 1.20179 0.94272 0.94051 1.11409 1.24166 0.92148 0.98150 0.89916 1.85727 1.17426 0.92283 1.85070 1.21419 0.90791 0.93815 1.02414 1.20645 0.93557 0.88531 1.53962 0.91573 1.24937 0.94656 0.99468 0.94363 1.69974 1.00800 1.32720 1.48459 0.86381 0.78746 0.83294 0.78413 1.20276 1.20874 1.19520 1.68731 1.07273 1.29165 1.18804 1.20796 0.91778 0.94544 1.03648 1.21572 0.96537 0.97439 1.00057 1.21586 0.98543 0.94768 1.00627 1.20346 0.87186 0.98234 1.02265 0.89558 0.89852 0.89047 0.92933 0.92936 0.92368 0.88745 0.89469 0.91540 0.90911 0.91060 0.91274 0.90163 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.31 36.00 0.37 -0.80 16 2 C 0.35 6.53 7.64 -157.40 -1.20 5.33 16 3 N -0.52 -9.57 10.37 -9.62 -0.10 -9.67 16 4 C 0.11 1.92 7.67 -16.19 -0.12 1.79 16 5 S 0.14 1.86 23.18 -107.50 -2.49 -0.63 16 6 C -0.19 -2.44 6.29 -35.41 -0.22 -2.67 16 7 C -0.05 -0.70 5.93 -102.49 -0.61 -1.30 16 8 C -0.18 -3.30 6.03 -105.05 -0.63 -3.93 16 9 C 0.22 4.54 7.08 -15.79 -0.11 4.43 16 10 S -0.05 -1.01 18.58 -107.50 -2.00 -3.00 16 11 C 0.06 1.60 4.63 36.00 0.17 1.77 16 12 C -0.53 -14.28 9.13 -34.44 -0.31 -14.60 16 13 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 15 N -0.88 -25.27 13.29 55.43 0.74 -24.53 16 16 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 N -0.52 -11.00 9.16 -9.08 -0.08 -11.09 16 21 C -0.07 -0.90 4.72 -27.10 -0.13 -1.03 16 22 C -0.12 -1.17 5.91 -26.66 -0.16 -1.33 16 23 C -0.12 -0.99 5.94 -26.62 -0.16 -1.15 16 24 C -0.04 -0.38 6.24 -27.27 -0.17 -0.55 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.45 8.14 -51.91 -0.42 1.03 16 29 H 0.05 1.45 8.14 -51.91 -0.42 1.02 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 1.39 6.13 -51.83 -0.32 1.07 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -30.42 338.17 -12.18 -42.59 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.93 Total: -2.25 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.39 Total: -12.19 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.55 Total: -45.28 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -4.49 Total: -3.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.42 -12.18 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.874 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds