Wall clock time and date at job start Tue Mar 31 2020 13:01:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31573 * 1
3 3 Si 1.86799 * 119.99729 * 2 1
4 4 H 1.48507 * 109.47135 * 240.00428 * 3 2 1
5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47192 * 120.00517 * 3 2 1
7 7 C 1.38636 * 120.00218 * 180.02562 * 2 1 3
8 8 H 1.07992 * 119.99848 * 179.97438 * 7 2 1
9 9 O 1.34805 * 119.99827 * 359.97438 * 7 2 1
10 10 C 1.35779 * 116.99917 * 185.40081 * 9 7 2
11 11 C 1.38911 * 119.99642 * 186.16573 * 10 9 7
12 12 C 1.37999 * 120.00420 * 180.25726 * 11 10 9
13 13 C 1.38946 * 119.99366 * 359.46529 * 12 11 10
14 14 N 1.39891 * 120.00462 * 180.29674 * 13 12 11
15 15 C 1.34778 * 119.99892 * 33.70368 * 14 13 12
16 16 O 1.21547 * 120.00248 * 5.21483 * 15 14 13
17 17 C 1.47965 * 120.00407 * 185.21747 * 15 14 13
18 18 C 1.40015 * 120.92408 * 359.72179 * 17 15 14
19 19 C 1.37925 * 119.08884 * 179.72547 * 18 17 15
20 20 N 1.31941 * 121.01694 * 0.55959 * 19 18 17
21 21 C 1.31865 * 122.06198 * 359.71266 * 20 19 18
22 22 F 1.35100 * 119.60914 * 179.97438 * 21 20 19
23 23 C 1.38872 * 120.78713 * 359.97438 * 21 20 19
24 24 F 1.35100 * 120.55153 * 179.97438 * 23 21 20
25 25 C 1.38950 * 119.98999 * 0.28290 * 13 12 11
26 26 C 1.37989 * 120.00100 * 359.97438 * 25 13 12
27 27 H 0.97001 * 120.00453 * 359.97438 * 1 2 3
28 28 H 1.08004 * 120.00181 * 359.97438 * 11 10 9
29 29 H 1.07993 * 120.00268 * 179.74202 * 12 11 10
30 30 H 0.97007 * 120.00517 * 213.69823 * 14 13 12
31 31 H 1.07995 * 120.45139 * 359.97438 * 18 17 15
32 32 H 1.07995 * 119.49027 * 180.27084 * 19 18 17
33 33 H 1.08001 * 120.00058 * 180.02562 * 25 13 12
34 34 H 1.07993 * 120.00377 * 180.02562 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3157 0.0000 0.0000
3 14 2.2497 1.6178 0.0000
4 1 3.1034 1.6965 -1.2126
5 1 1.2846 2.7465 -0.0006
6 1 3.1035 1.6964 1.2124
7 6 2.0090 -1.2006 -0.0005
8 1 3.0889 -1.2005 -0.0010
9 8 1.3349 -2.3680 -0.0005
10 6 2.0699 -3.5041 0.1128
11 6 1.4552 -4.7439 -0.0088
12 6 2.2011 -5.8987 0.1117
13 6 3.5688 -5.8211 0.3435
14 7 4.3262 -6.9916 0.4594
15 6 3.9986 -8.0806 -0.2639
16 8 3.1055 -8.0181 -1.0860
17 6 4.7261 -9.3524 -0.0573
18 6 5.7619 -9.4447 0.8803
19 6 6.4107 -10.6504 1.0461
20 7 6.0767 -11.7065 0.3292
21 6 5.1122 -11.6661 -0.5691
22 9 4.8115 -12.7774 -1.2761
23 6 4.4017 -10.4949 -0.7971
24 9 3.4147 -10.4588 -1.7189
25 6 4.1843 -4.5808 0.4598
26 6 3.4373 -3.4263 0.3446
27 1 -0.4851 0.8400 0.0004
28 1 0.3927 -4.8041 -0.1930
29 1 1.7225 -6.8625 0.0213
30 1 5.0872 -7.0194 1.0604
31 1 6.0460 -8.5847 1.4685
32 1 7.2076 -10.7301 1.7706
33 1 5.2476 -4.5203 0.6396
34 1 3.9157 -2.4624 0.4346
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000097865975.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:08
Heat of formation + Delta-G solvation = -67.206817 kcal
Electronic energy + Delta-G solvation = -24862.662067 eV
Core-core repulsion = 20591.503852 eV
Total energy + Delta-G solvation = -4271.158215 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.076 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-49.93527 -49.01233 -41.04398 -39.86767 -38.71578 -36.64583 -34.42767 -33.19173
-32.23896 -31.25580 -30.33902 -28.25461 -25.83129 -25.18029 -24.17071 -22.52440
-21.95267 -20.63237 -19.12039 -18.53821 -18.13875 -17.94226 -17.27863 -17.16785
-17.00123 -16.23661 -15.58183 -15.40488 -15.07946 -14.99051 -14.66771 -14.54725
-14.31914 -13.71616 -13.68230 -13.61238 -13.44078 -13.04002 -12.91275 -12.63735
-11.98603 -11.69523 -11.63963 -11.07292 -10.91186 -10.77129 -10.55507 -10.52000
-10.07709 -9.73647 -9.49941 -9.42993 -8.79652 -8.32554 -7.06112 -6.51928
-4.09929 -0.15914 0.07594 1.94267 2.09282 2.45824 2.52987 2.87577
3.05294 3.08845 3.12281 3.13003 3.42961 3.83180 3.90567 3.90792
4.01559 4.46417 4.61607 4.82762 4.98485 5.03491 5.05663 5.21120
5.43132 5.64921 5.82238 5.95132 6.08990 6.11844 6.67054 6.70246
6.80508 6.81619 7.01322 7.11404 7.28894 7.43674 7.63193 7.91757
8.00729 8.92844 9.61807 10.65546
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.037425 B = 0.002332 C = 0.002235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 747.985818 B =12003.345472 C =12525.246710
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.040 3.960
3 Si 0.942 3.058
4 H -0.269 1.269
5 H -0.277 1.277
6 H -0.269 1.269
7 C -0.393 4.393
8 H 0.092 0.908
9 O -0.172 6.172
10 C 0.150 3.850
11 C -0.177 4.177
12 C -0.064 4.064
13 C 0.027 3.973
14 N -0.643 5.643
15 C 0.545 3.455
16 O -0.496 6.496
17 C -0.091 4.091
18 C -0.125 4.125
19 C 0.124 3.876
20 N -0.473 5.473
21 C 0.282 3.718
22 F -0.096 7.096
23 C 0.087 3.913
24 F -0.091 7.091
25 C -0.084 4.084
26 C -0.219 4.219
27 H 0.272 0.728
28 H 0.123 0.877
29 H 0.124 0.876
30 H 0.402 0.598
31 H 0.160 0.840
32 H 0.184 0.816
33 H 0.112 0.888
34 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.221 -17.648 4.324 23.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.165 4.165
3 Si 0.766 3.234
4 H -0.194 1.194
5 H -0.202 1.202
6 H -0.195 1.195
7 C -0.469 4.469
8 H 0.110 0.890
9 O -0.075 6.075
10 C 0.095 3.905
11 C -0.197 4.197
12 C -0.084 4.084
13 C -0.065 4.065
14 N -0.288 5.288
15 C 0.330 3.670
16 O -0.370 6.370
17 C -0.103 4.103
18 C -0.146 4.146
19 C -0.032 4.032
20 N -0.187 5.187
21 C 0.126 3.874
22 F -0.075 7.075
23 C 0.063 3.937
24 F -0.069 7.069
25 C -0.104 4.104
26 C -0.239 4.239
27 H 0.082 0.918
28 H 0.141 0.859
29 H 0.142 0.858
30 H 0.238 0.762
31 H 0.177 0.823
32 H 0.201 0.799
33 H 0.130 0.870
34 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 13.486 -18.195 3.752 22.957
hybrid contribution 0.334 1.264 -0.095 1.311
sum 13.820 -16.932 3.658 22.160
Atomic orbital electron populations
1.70033 1.05999 1.27975 1.45310 1.25315 0.95860 0.98923 0.96405
0.85768 0.78721 0.79672 0.79206 1.19441 1.20227 1.19456 1.21278
0.91780 0.80817 1.53027 0.89041 1.84003 1.34241 1.11469 1.77779
1.19444 0.90404 0.88045 0.92600 1.20121 1.00217 0.89481 1.09872
1.20589 0.91533 0.98008 0.98234 1.17150 0.90681 0.84086 1.14595
1.42963 1.32055 1.10874 1.42899 1.17744 0.84297 0.82960 0.81983
1.90908 1.29865 1.83628 1.32604 1.20580 0.98198 0.94080 0.97473
1.22426 0.94324 1.00642 0.97169 1.22604 0.98332 0.86125 0.96132
1.67002 1.13229 1.33252 1.05248 1.18040 0.94089 0.82189 0.93072
1.91702 1.91143 1.49817 1.74795 1.18416 0.90169 0.93255 0.91883
1.91684 1.57141 1.96516 1.61590 1.20452 0.98330 0.90614 1.00975
1.20979 0.94200 0.98394 1.10359 0.91817 0.85937 0.85801 0.76211
0.82253 0.79873 0.86973 0.84931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.67 13.67 55.48 0.76 -23.92 16
2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
3 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16
4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16
6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
7 C -0.39 -10.62 9.44 30.88 0.29 -10.33 16
8 H 0.09 2.25 5.29 -52.49 -0.28 1.97 16
9 O -0.17 -4.78 9.75 0.03 0.00 -4.78 16
10 C 0.15 3.50 6.65 -39.08 -0.26 3.24 16
11 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16
12 C -0.06 -1.19 8.64 -39.41 -0.34 -1.53 16
13 C 0.03 0.44 6.27 -83.65 -0.52 -0.09 16
14 N -0.64 -7.73 5.29 -10.64 -0.06 -7.79 16
15 C 0.54 7.29 7.53 -12.27 -0.09 7.20 16
16 O -0.50 -8.84 13.18 5.32 0.07 -8.77 16
17 C -0.09 -0.91 5.91 -104.61 -0.62 -1.53 16
18 C -0.12 -0.69 9.61 -39.03 -0.37 -1.07 16
19 C 0.12 0.66 11.16 -17.62 -0.20 0.46 16
20 N -0.47 -4.19 10.34 -13.59 -0.14 -4.33 16
21 C 0.28 2.93 8.42 -17.30 -0.15 2.78 16
22 F -0.10 -1.06 17.21 2.25 0.04 -1.02 16
23 C 0.09 0.99 7.34 -38.72 -0.28 0.71 16
24 F -0.09 -1.28 15.63 2.25 0.04 -1.24 16
25 C -0.08 -1.38 9.96 -39.41 -0.39 -1.77 16
26 C -0.22 -4.45 9.13 -39.42 -0.36 -4.81 16
27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
28 H 0.12 2.53 8.06 -52.48 -0.42 2.10 16
29 H 0.12 2.27 6.43 -52.49 -0.34 1.93 16
30 H 0.40 3.01 6.97 -40.82 -0.28 2.73 16
31 H 0.16 0.32 6.54 -52.49 -0.34 -0.03 16
32 H 0.18 0.25 8.06 -52.49 -0.42 -0.18 16
33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16
34 H 0.13 2.65 5.71 -52.49 -0.30 2.35 16
LS Contribution 314.92 15.07 4.75 4.75
Total: -1.00 -33.66 314.92 -5.31 -38.97
By element:
Atomic # 1 Polarization: 5.16 SS G_CDS: -1.95 Total: 3.21 kcal
Atomic # 6 Polarization: -6.11 SS G_CDS: -3.79 Total: -9.90 kcal
Atomic # 7 Polarization: -36.60 SS G_CDS: 0.56 Total: -36.03 kcal
Atomic # 8 Polarization: -13.63 SS G_CDS: 0.07 Total: -13.56 kcal
Atomic # 9 Polarization: -2.34 SS G_CDS: 0.07 Total: -2.26 kcal
Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -33.66 -5.31 -38.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097865975.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.238 kcal
(2) G-P(sol) polarization free energy of solvation -33.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds