Wall clock time and date at job start Tue Mar 31 2020 13:01:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31573 * 1
3 3 Si 1.86799 * 119.99729 * 2 1
4 4 H 1.48507 * 109.47135 * 240.00428 * 3 2 1
5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47192 * 120.00517 * 3 2 1
7 7 C 1.38636 * 120.00218 * 180.02562 * 2 1 3
8 8 H 1.07992 * 119.99848 * 179.97438 * 7 2 1
9 9 O 1.34805 * 119.99827 * 359.97438 * 7 2 1
10 10 C 1.35779 * 116.99917 * 185.40081 * 9 7 2
11 11 C 1.38911 * 119.99642 * 186.16573 * 10 9 7
12 12 C 1.37999 * 120.00420 * 180.25726 * 11 10 9
13 13 C 1.38946 * 119.99366 * 359.46529 * 12 11 10
14 14 N 1.39891 * 120.00462 * 180.29674 * 13 12 11
15 15 C 1.34778 * 119.99892 * 33.70368 * 14 13 12
16 16 O 1.21547 * 120.00248 * 5.21483 * 15 14 13
17 17 C 1.47965 * 120.00407 * 185.21747 * 15 14 13
18 18 C 1.40015 * 120.92408 * 359.72179 * 17 15 14
19 19 C 1.37925 * 119.08884 * 179.72547 * 18 17 15
20 20 N 1.31941 * 121.01694 * 0.55959 * 19 18 17
21 21 C 1.31865 * 122.06198 * 359.71266 * 20 19 18
22 22 F 1.35100 * 119.60914 * 179.97438 * 21 20 19
23 23 C 1.38872 * 120.78713 * 359.97438 * 21 20 19
24 24 F 1.35100 * 120.55153 * 179.97438 * 23 21 20
25 25 C 1.38950 * 119.98999 * 0.28290 * 13 12 11
26 26 C 1.37989 * 120.00100 * 359.97438 * 25 13 12
27 27 H 0.97001 * 120.00453 * 359.97438 * 1 2 3
28 28 H 1.08004 * 120.00181 * 359.97438 * 11 10 9
29 29 H 1.07993 * 120.00268 * 179.74202 * 12 11 10
30 30 H 0.97007 * 120.00517 * 213.69823 * 14 13 12
31 31 H 1.07995 * 120.45139 * 359.97438 * 18 17 15
32 32 H 1.07995 * 119.49027 * 180.27084 * 19 18 17
33 33 H 1.08001 * 120.00058 * 180.02562 * 25 13 12
34 34 H 1.07993 * 120.00377 * 180.02562 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3157 0.0000 0.0000
3 14 2.2497 1.6178 0.0000
4 1 3.1034 1.6965 -1.2126
5 1 1.2846 2.7465 -0.0006
6 1 3.1035 1.6964 1.2124
7 6 2.0090 -1.2006 -0.0005
8 1 3.0889 -1.2005 -0.0010
9 8 1.3349 -2.3680 -0.0005
10 6 2.0699 -3.5041 0.1128
11 6 1.4552 -4.7439 -0.0088
12 6 2.2011 -5.8987 0.1117
13 6 3.5688 -5.8211 0.3435
14 7 4.3262 -6.9916 0.4594
15 6 3.9986 -8.0806 -0.2639
16 8 3.1055 -8.0181 -1.0860
17 6 4.7261 -9.3524 -0.0573
18 6 5.7619 -9.4447 0.8803
19 6 6.4107 -10.6504 1.0461
20 7 6.0767 -11.7065 0.3292
21 6 5.1122 -11.6661 -0.5691
22 9 4.8115 -12.7774 -1.2761
23 6 4.4017 -10.4949 -0.7971
24 9 3.4147 -10.4588 -1.7189
25 6 4.1843 -4.5808 0.4598
26 6 3.4373 -3.4263 0.3446
27 1 -0.4851 0.8400 0.0004
28 1 0.3927 -4.8041 -0.1930
29 1 1.7225 -6.8625 0.0213
30 1 5.0872 -7.0194 1.0604
31 1 6.0460 -8.5847 1.4685
32 1 7.2076 -10.7301 1.7706
33 1 5.2476 -4.5203 0.6396
34 1 3.9157 -2.4624 0.4346
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000097865975.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:07
Heat of formation + Delta-G solvation = -91.449516 kcal
Electronic energy + Delta-G solvation = -24863.713309 eV
Core-core repulsion = 20591.503852 eV
Total energy + Delta-G solvation = -4272.209457 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.076 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.75990 -49.86692 -41.99153 -40.96899 -40.21301 -38.21046 -35.71691 -34.31210
-33.85579 -31.93377 -31.86489 -29.71074 -27.44653 -26.35782 -24.83715 -24.02408
-23.26273 -21.94032 -20.16455 -19.72407 -19.39338 -18.99012 -18.63687 -18.07233
-17.96999 -17.54900 -16.59571 -16.37541 -16.29098 -16.04769 -15.90818 -15.75818
-15.50734 -15.49265 -15.07299 -14.59130 -14.36997 -14.29335 -14.15008 -13.71273
-13.61134 -13.31224 -13.24588 -12.65582 -12.51501 -12.15168 -11.71005 -11.36058
-11.29538 -11.17109 -10.93676 -10.58011 -10.16238 -9.87059 -8.66202 -8.45326
-6.12853 -0.89546 -0.55449 0.50682 0.51972 1.38219 1.46459 1.54687
1.55287 1.60586 2.04984 2.19927 2.28580 2.76373 2.81991 3.07412
3.16088 3.29762 3.33234 3.49790 3.98204 4.07019 4.10422 4.16925
4.47665 4.49272 4.56196 4.58838 4.69461 5.04636 5.14823 5.22470
5.24196 5.41156 5.50393 5.66079 6.02107 6.09845 6.22788 6.30862
6.95276 6.99201 7.79078 8.77708
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.037425 B = 0.002332 C = 0.002235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 747.985818 B =12003.345472 C =12525.246710
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.025 4.025
3 Si 1.020 2.980
4 H -0.258 1.258
5 H -0.277 1.277
6 H -0.252 1.252
7 C -0.412 4.412
8 H 0.109 0.891
9 O -0.231 6.231
10 C 0.111 3.889
11 C -0.192 4.192
12 C -0.072 4.072
13 C 0.058 3.942
14 N -0.626 5.626
15 C 0.549 3.451
16 O -0.547 6.547
17 C -0.102 4.102
18 C -0.091 4.091
19 C 0.143 3.857
20 N -0.484 5.484
21 C 0.267 3.733
22 F -0.109 7.109
23 C 0.059 3.941
24 F -0.119 7.119
25 C -0.069 4.069
26 C -0.220 4.220
27 H 0.272 0.728
28 H 0.110 0.890
29 H 0.126 0.874
30 H 0.431 0.569
31 H 0.209 0.791
32 H 0.237 0.763
33 H 0.168 0.832
34 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.382 -18.586 6.532 27.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.222 4.222
3 Si 0.839 3.161
4 H -0.182 1.182
5 H -0.201 1.201
6 H -0.176 1.176
7 C -0.488 4.488
8 H 0.126 0.874
9 O -0.137 6.137
10 C 0.060 3.940
11 C -0.212 4.212
12 C -0.092 4.092
13 C -0.035 4.035
14 N -0.274 5.274
15 C 0.336 3.664
16 O -0.424 6.424
17 C -0.114 4.114
18 C -0.111 4.111
19 C -0.013 4.013
20 N -0.198 5.198
21 C 0.114 3.886
22 F -0.088 7.088
23 C 0.035 3.965
24 F -0.097 7.097
25 C -0.088 4.088
26 C -0.240 4.240
27 H 0.081 0.919
28 H 0.128 0.872
29 H 0.144 0.856
30 H 0.272 0.728
31 H 0.226 0.774
32 H 0.253 0.747
33 H 0.186 0.814
34 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 18.718 -19.222 5.983 27.489
hybrid contribution -1.039 1.122 -0.687 1.677
sum 17.678 -18.100 5.296 25.849
Atomic orbital electron populations
1.70199 1.08205 1.28901 1.48735 1.26646 0.96815 1.02948 0.95837
0.84623 0.77332 0.74026 0.80096 1.18200 1.20134 1.17587 1.21837
0.92723 0.81217 1.53040 0.87415 1.83969 1.36006 1.12653 1.81065
1.19907 0.92090 0.87509 0.94497 1.20218 1.00223 0.90065 1.10651
1.20695 0.93010 0.97010 0.98453 1.17237 0.89977 0.85963 1.10323
1.42755 1.32303 1.08997 1.43303 1.18222 0.83409 0.83922 0.80814
1.90905 1.32169 1.84483 1.34816 1.20334 0.99885 0.91705 0.99456
1.22983 0.91127 1.02378 0.94609 1.23586 0.98054 0.84702 0.95002
1.67134 1.12586 1.34952 1.05143 1.18046 0.94955 0.81659 0.93983
1.91658 1.91433 1.50366 1.75355 1.18722 0.90634 0.94559 0.92632
1.91606 1.58508 1.96739 1.62889 1.20865 1.00593 0.88757 0.98603
1.21171 0.92955 1.00153 1.09691 0.91884 0.87213 0.85630 0.72778
0.77394 0.74678 0.81416 0.84699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.17 13.67 21.61 0.30 -55.87 16
2 C -0.03 -1.39 5.49 84.83 0.47 -0.92 16
3 Si 1.02 41.34 29.55 68.60 2.03 43.37 16
4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16
5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16
6 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16
7 C -0.41 -23.17 9.44 67.91 0.64 -22.53 16
8 H 0.11 5.37 5.29 -2.91 -0.02 5.35 16
9 O -0.23 -13.64 9.75 -22.80 -0.22 -13.86 16
10 C 0.11 5.38 6.65 22.59 0.15 5.53 16
11 C -0.19 -8.49 9.98 22.37 0.22 -8.27 16
12 C -0.07 -2.66 8.64 22.38 0.19 -2.47 16
13 C 0.06 1.72 6.27 38.20 0.24 1.96 16
14 N -0.63 -12.02 5.29 -305.87 -1.62 -13.64 16
15 C 0.55 13.18 7.53 86.82 0.65 13.83 16
16 O -0.55 -19.28 13.18 -3.86 -0.05 -19.33 16
17 C -0.10 -1.70 5.91 -19.86 -0.12 -1.82 16
18 C -0.09 -0.43 9.61 22.63 0.22 -0.22 16
19 C 0.14 0.64 11.16 84.60 0.94 1.58 16
20 N -0.48 -6.87 10.34 -196.92 -2.04 -8.91 16
21 C 0.27 5.24 8.42 84.84 0.71 5.95 16
22 F -0.11 -2.45 17.21 44.97 0.77 -1.68 16
23 C 0.06 1.29 7.34 22.83 0.17 1.46 16
24 F -0.12 -3.49 15.63 44.97 0.70 -2.79 16
25 C -0.07 -1.97 9.96 22.38 0.22 -1.75 16
26 C -0.22 -8.64 9.13 22.37 0.20 -8.44 16
27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16
29 H 0.13 4.63 6.43 -2.91 -0.02 4.61 16
30 H 0.43 3.31 6.97 -92.70 -0.65 2.66 16
31 H 0.21 -1.08 6.54 -2.91 -0.02 -1.10 16
32 H 0.24 -1.37 8.06 -2.91 -0.02 -1.40 16
33 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16
34 H 0.14 5.20 5.71 -2.91 -0.02 5.19 16
Total: -1.00 -84.40 314.92 5.36 -79.04
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: 0.56 Total: 9.75 kcal
Atomic # 6 Polarization: -21.01 SS G_CDS: 4.92 Total: -16.09 kcal
Atomic # 7 Polarization: -75.05 SS G_CDS: -3.36 Total: -78.41 kcal
Atomic # 8 Polarization: -32.92 SS G_CDS: -0.27 Total: -33.19 kcal
Atomic # 9 Polarization: -5.94 SS G_CDS: 1.48 Total: -4.47 kcal
Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal
Total: -84.40 5.36 -79.04 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097865975.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.405 kcal
(2) G-P(sol) polarization free energy of solvation -84.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds