Wall clock time and date at job start Tue Mar 31 2020 12:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48502 * 109.46867 * 269.99646 * 3 2 1 5 5 H 1.48495 * 109.47572 * 29.99469 * 3 2 1 6 6 H 1.48499 * 109.47181 * 149.99970 * 3 2 1 7 7 C 1.38640 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99475 * 180.02562 * 7 2 1 9 9 O 1.34797 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.35768 * 116.99970 * 174.53096 * 9 7 2 11 11 C 1.38733 * 120.09300 * 354.22122 * 10 9 7 12 12 C 1.38344 * 119.98452 * 180.29482 * 11 10 9 13 13 F 1.35096 * 119.92072 * 179.97438 * 12 11 10 14 14 C 1.38557 * 120.15819 * 359.95798 * 12 11 10 15 15 C 1.38179 * 120.17802 * 0.04086 * 14 12 11 16 16 C 1.38734 * 120.02159 * 359.97438 * 15 14 12 17 17 N 1.39986 * 120.08221 * 179.97438 * 16 15 14 18 18 C 1.34776 * 119.99838 * 34.10368 * 17 16 15 19 19 O 1.21541 * 120.00283 * 5.61258 * 18 17 16 20 20 C 1.48114 * 120.00255 * 185.61988 * 18 17 16 21 21 C 1.39912 * 120.91552 * 179.97438 * 20 18 17 22 22 C 1.38031 * 119.06847 * 180.02562 * 21 20 18 23 23 N 1.31884 * 120.93787 * 359.97438 * 22 21 20 24 24 C 1.31968 * 122.01165 * 0.02562 * 23 22 21 25 25 F 1.35106 * 119.58385 * 180.02562 * 24 23 22 26 26 C 1.38511 * 120.83219 * 359.71475 * 24 23 22 27 27 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.00884 * 0.25815 * 11 10 9 29 29 H 1.08001 * 119.91177 * 180.02562 * 14 12 11 30 30 H 1.08004 * 119.99065 * 179.97438 * 15 14 12 31 31 H 0.96998 * 120.00013 * 214.09889 * 17 16 15 32 32 H 1.08009 * 120.46506 * 359.97438 * 21 20 18 33 33 H 1.08004 * 119.52834 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.51371 * 180.31125 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0695 -3.5040 -0.1132 11 6 3.4353 -3.4287 -0.3449 12 6 4.1807 -4.5877 -0.4676 13 9 5.5105 -4.5129 -0.6936 14 6 3.5667 -5.8250 -0.3588 15 6 2.2068 -5.9077 -0.1281 16 6 1.4521 -4.7502 -0.0042 17 7 0.0743 -4.8326 0.2290 18 6 -0.4233 -5.8350 0.9800 19 8 0.3303 -6.6078 1.5386 20 6 -1.8887 -5.9951 1.1246 21 6 -2.4259 -7.0291 1.8990 22 6 -3.7973 -7.1430 2.0071 23 7 -4.5986 -6.2941 1.3935 24 6 -4.1351 -5.3047 0.6533 25 9 -5.0008 -4.4631 0.0469 26 6 -2.7723 -5.1143 0.4956 27 1 -0.4850 0.8401 -0.0004 28 1 3.9165 -2.4655 -0.4300 29 1 4.1525 -6.7272 -0.4548 30 1 1.7313 -6.8738 -0.0443 31 1 -0.5223 -4.1682 -0.1498 32 1 -1.7767 -7.7288 2.4044 33 1 -4.2200 -7.9387 2.6026 34 1 -2.3985 -4.2999 -0.1072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120546961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:09 Heat of formation + Delta-G solvation = -94.910329 kcal Electronic energy + Delta-G solvation = -25476.020487 eV Core-core repulsion = 21203.660957 eV Total energy + Delta-G solvation = -4272.359529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -50.16270 -49.86108 -42.07002 -41.03453 -39.98909 -38.07284 -35.86077 -34.35123 -34.05734 -32.04193 -31.16159 -30.05379 -27.46234 -26.28952 -24.82770 -24.06717 -23.24577 -21.85431 -20.19704 -20.05040 -19.31751 -18.68878 -17.90464 -17.71319 -17.31693 -17.19225 -17.03216 -16.83363 -16.53166 -16.10208 -15.91310 -15.87250 -15.47928 -15.35115 -15.12201 -14.78739 -14.58225 -14.24429 -14.03658 -13.81975 -13.44716 -13.31795 -13.08595 -12.64593 -12.37603 -12.16697 -11.74999 -11.55662 -11.27757 -11.21446 -10.88054 -10.83581 -10.19411 -9.62002 -8.85788 -8.54399 -6.20427 -0.68416 -0.26243 0.16584 0.42285 1.36353 1.42814 1.51332 1.56908 1.79379 2.11966 2.35957 2.48069 2.63949 3.02208 3.10298 3.15570 3.40700 3.50861 3.68370 3.71087 3.89783 4.14339 4.25927 4.28857 4.38432 4.53447 4.63237 4.82454 4.87159 4.98671 5.18631 5.23977 5.29749 5.37411 5.41826 5.89225 5.95491 6.23838 6.42419 6.83125 6.90809 7.57100 8.65890 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004487 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.068126 B = 6238.614184 C = 8726.647136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.202 6.202 10 C 0.134 3.866 11 C -0.265 4.265 12 C 0.129 3.871 13 F -0.143 7.143 14 C -0.202 4.202 15 C -0.044 4.044 16 C 0.054 3.946 17 N -0.642 5.642 18 C 0.558 3.442 19 O -0.537 6.537 20 C -0.065 4.065 21 C -0.113 4.113 22 C 0.147 3.853 23 N -0.514 5.514 24 C 0.293 3.707 25 F -0.116 7.116 26 C -0.162 4.162 27 H 0.275 0.725 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.417 0.583 32 H 0.178 0.822 33 H 0.221 0.779 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -12.451 1.360 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.107 6.107 10 C 0.081 3.919 11 C -0.285 4.285 12 C 0.109 3.891 13 F -0.122 7.122 14 C -0.222 4.222 15 C -0.064 4.064 16 C -0.041 4.041 17 N -0.287 5.287 18 C 0.347 3.653 19 O -0.415 6.415 20 C -0.076 4.076 21 C -0.134 4.134 22 C -0.010 4.010 23 N -0.230 5.230 24 C 0.141 3.859 25 F -0.095 7.095 26 C -0.184 4.184 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.180 0.820 30 H 0.172 0.828 31 H 0.255 0.745 32 H 0.196 0.804 33 H 0.238 0.762 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.285 -12.831 1.804 13.648 hybrid contribution 1.001 1.948 -0.619 2.276 sum -3.284 -10.883 1.185 11.430 Atomic orbital electron populations 1.70106 1.07537 1.29073 1.47246 1.26368 0.96806 1.02114 0.95438 0.84687 0.77900 0.75124 0.79268 1.18807 1.19633 1.18145 1.21724 0.92511 0.81020 1.53849 0.88280 1.83896 1.34780 1.11938 1.80066 1.19185 0.90252 0.87140 0.95366 1.20956 0.93985 0.99163 1.14433 1.17488 0.76977 0.94191 1.00453 1.91439 1.31315 1.97331 1.92097 1.20879 0.95011 0.96383 1.09938 1.20726 0.92941 0.96828 0.95899 1.17066 0.84132 0.91055 1.11832 1.43101 1.06238 1.29089 1.50226 1.18353 0.88118 0.80882 0.77989 1.90756 1.59769 1.44349 1.46591 1.20077 0.91672 0.97002 0.98823 1.22657 0.97467 0.96932 0.96317 1.23299 0.88530 0.95382 0.93802 1.66985 1.43197 1.04147 1.08659 1.18012 0.84816 0.89185 0.93924 1.91637 1.70126 1.67720 1.80054 1.22101 0.92070 1.01675 1.02525 0.91561 0.84584 0.82026 0.82809 0.74536 0.80446 0.76227 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.06 13.67 21.61 0.30 -49.77 16 2 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 3 Si 1.01 40.11 29.55 68.60 2.03 42.14 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.42 -22.05 9.44 67.92 0.64 -21.41 16 8 H 0.10 4.94 5.30 -2.91 -0.02 4.92 16 9 O -0.20 -10.60 9.30 -22.61 -0.21 -10.81 16 10 C 0.13 6.05 6.66 22.69 0.15 6.20 16 11 C -0.26 -11.10 9.11 22.41 0.20 -10.90 16 12 C 0.13 4.67 7.29 22.37 0.16 4.84 16 13 F -0.14 -4.93 17.26 44.97 0.78 -4.16 16 14 C -0.20 -6.42 10.02 22.33 0.22 -6.19 16 15 C -0.04 -1.47 8.65 22.37 0.19 -1.28 16 16 C 0.05 2.08 6.28 38.26 0.24 2.32 16 17 N -0.64 -22.34 5.15 -305.40 -1.57 -23.91 16 18 C 0.56 17.34 7.52 86.87 0.65 17.99 16 19 O -0.54 -18.24 14.20 -3.84 -0.05 -18.30 16 20 C -0.06 -1.62 5.91 -19.89 -0.12 -1.73 16 21 C -0.11 -2.08 9.68 22.63 0.22 -1.86 16 22 C 0.15 2.33 11.17 84.64 0.95 3.27 16 23 N -0.51 -11.85 10.35 -197.09 -2.04 -13.89 16 24 C 0.29 7.57 8.41 84.74 0.71 8.28 16 25 F -0.12 -3.24 17.29 44.97 0.78 -2.46 16 26 C -0.16 -4.10 9.59 22.69 0.22 -3.88 16 27 H 0.28 14.12 8.31 -92.71 -0.77 13.34 16 28 H 0.14 5.84 5.71 -2.91 -0.02 5.82 16 29 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 30 H 0.15 4.66 6.48 -2.91 -0.02 4.64 16 31 H 0.42 14.31 6.71 -92.71 -0.62 13.69 16 32 H 0.18 2.60 7.74 -2.91 -0.02 2.58 16 33 H 0.22 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.15 3.90 6.55 -2.91 -0.02 3.88 16 Total: -1.00 -64.78 316.22 5.50 -59.28 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.59 Total: 26.15 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.91 Total: -4.27 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.32 Total: -87.57 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.26 Total: -29.11 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.55 Total: -6.62 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -64.78 5.50 -59.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120546961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.629 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds