Wall clock time and date at job start Tue Mar 31 2020 13:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38226 * 120.01604 * 2 1 4 4 C 1.38220 * 120.02826 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.05325 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.98807 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99706 * 6 5 4 8 8 C 1.34214 * 125.90000 * 89.71686 * 7 6 5 9 9 N 1.31245 * 115.74799 * 179.81494 * 8 7 6 10 10 C 1.30352 * 117.06177 * 0.49164 * 9 8 7 11 11 N 1.37919 * 125.43601 * 179.71540 * 10 9 8 12 12 C 1.34775 * 119.99999 * 0.02562 * 11 10 9 13 13 O 1.21855 * 120.00239 * 0.02562 * 12 11 10 14 14 C 1.41240 * 119.99885 * 179.97438 * 12 11 10 15 15 H 1.07995 * 120.00097 * 0.02562 * 14 12 11 16 16 C 1.40162 * 119.99709 * 179.97438 * 14 12 11 17 17 N 1.30621 * 120.00085 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99517 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47330 * 60.00121 * 18 16 14 20 20 H 1.48504 * 109.46927 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47218 * 299.99958 * 18 16 14 22 22 S 1.76162 * 109.12390 * 359.73342 * 10 9 8 23 23 C 1.38176 * 120.02559 * 0.25013 * 5 4 3 24 24 C 1.38436 * 120.01820 * 180.02562 * 2 1 3 25 25 F 1.35110 * 120.02224 * 359.95740 * 24 2 1 26 26 H 1.09000 * 109.46879 * 90.00044 * 1 2 3 27 27 H 1.09004 * 109.46782 * 209.99352 * 1 2 3 28 28 H 1.08995 * 109.47369 * 329.99716 * 1 2 3 29 29 H 1.08005 * 119.97870 * 0.02917 * 3 2 1 30 30 H 1.07997 * 119.97001 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 329.99799 * 6 5 4 32 32 H 1.09001 * 109.46980 * 209.99899 * 6 5 4 33 33 H 1.08003 * 122.12800 * 359.97438 * 8 7 6 34 34 H 0.96998 * 119.99597 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99525 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.01471 * 179.71287 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0028 7 6 6.2837 0.0028 1.4177 8 6 6.5430 -1.0844 2.1608 9 7 6.9790 -0.8530 3.3769 10 6 7.1035 0.3942 3.7350 11 7 7.5390 0.8325 4.9680 12 6 7.8775 -0.0600 5.9195 13 8 7.7994 -1.2542 5.6901 14 6 8.3239 0.3889 7.1820 15 1 8.3936 1.4472 7.3852 16 6 8.6755 -0.5394 8.1716 17 7 8.5908 -1.8195 7.9261 18 14 9.2653 0.0544 9.8417 19 1 8.2033 0.8735 10.4792 20 1 9.5725 -1.1158 10.7029 21 1 10.4895 0.8774 9.6705 22 16 6.6264 1.4304 2.3926 23 6 3.5843 -1.1971 -0.0074 24 6 2.1995 -1.1987 -0.0005 25 9 1.5248 -2.3692 -0.0002 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6583 2.1322 0.0005 30 1 4.1199 2.1328 -0.0010 31 1 6.1421 0.8933 -0.5165 32 1 6.1444 -0.8866 -0.5173 33 1 6.4044 -2.0860 1.7813 34 1 7.6015 1.7831 5.1505 35 1 8.8338 -2.4618 8.6111 36 1 4.1256 -2.1317 -0.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132025457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:47 Heat of formation + Delta-G solvation = -16.560238 kcal Electronic energy + Delta-G solvation = -22791.209237 eV Core-core repulsion = 19088.460398 eV Total energy + Delta-G solvation = -3702.748838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.95813 -39.56682 -39.01827 -37.34537 -34.56817 -33.49314 -32.44326 -30.90815 -30.64636 -27.80106 -26.78349 -24.90748 -23.45996 -22.96116 -21.45667 -20.92018 -18.69094 -18.36147 -17.14417 -16.70959 -16.45824 -15.80833 -15.78466 -15.57736 -15.46749 -14.49338 -14.22995 -14.10211 -14.01140 -13.59050 -13.54151 -13.32237 -12.92246 -12.76991 -12.59699 -12.28349 -12.11294 -11.71655 -11.63048 -11.41534 -11.21737 -11.10351 -10.75586 -10.72485 -10.42929 -9.67026 -9.01744 -8.95121 -8.90545 -8.72315 -8.55541 -7.67728 -7.17125 -6.43510 -5.00012 0.99657 1.10461 1.43695 1.62388 2.22627 3.03495 3.08919 3.11167 3.43115 3.63263 3.90161 4.13961 4.24246 4.39330 4.52656 4.59491 4.81349 4.94019 5.14860 5.29380 5.32678 5.35342 5.40598 5.46510 5.55569 5.65573 5.71196 5.84202 5.97537 6.02918 6.14543 6.20859 6.43094 6.63632 6.80810 7.14922 7.30197 7.76575 7.89722 8.55099 8.70605 9.13580 10.30792 10.50068 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002739 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.102700 B =10218.808696 C =10577.963111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.128 4.128 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.048 4.048 6 C 0.015 3.985 7 C -0.277 4.277 8 C 0.096 3.904 9 N -0.490 5.490 10 C 0.362 3.638 11 N -0.638 5.638 12 C 0.529 3.471 13 O -0.515 6.515 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.742 5.742 18 Si 0.917 3.083 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 S -0.008 6.008 23 C -0.142 4.142 24 C 0.097 3.903 25 F -0.140 7.140 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.403 0.597 35 H 0.276 0.724 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 7.449 -15.551 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.137 4.137 5 C -0.049 4.049 6 C -0.025 4.025 7 C -0.400 4.400 8 C -0.057 4.057 9 N -0.212 5.212 10 C -0.008 4.008 11 N -0.287 5.287 12 C 0.336 3.664 13 O -0.391 6.391 14 C -0.569 4.569 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.369 5.369 18 Si 0.741 3.259 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.190 1.190 22 S 0.240 5.760 23 C -0.161 4.161 24 C 0.078 3.922 25 F -0.119 7.119 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.988 6.996 -15.233 19.513 hybrid contribution 0.074 -0.196 0.669 0.701 sum -9.913 6.801 -14.564 18.885 Atomic orbital electron populations 1.20702 0.90378 1.03292 1.02527 1.19907 0.96909 0.92070 1.04022 1.20872 0.94017 0.96893 0.99156 1.21072 0.93993 0.97909 1.00723 1.19729 0.95821 0.92269 0.97040 1.18751 0.89316 1.03752 0.90688 1.24870 1.20150 0.93678 1.01325 1.21587 0.96771 0.99111 0.88239 1.66753 1.22903 1.15880 1.15671 1.25075 0.95267 0.89341 0.91157 1.44447 1.64216 1.11554 1.08470 1.17274 0.80134 0.85550 0.83479 1.90819 1.54987 1.14502 1.78820 1.19850 1.45986 0.94641 0.96398 0.90957 1.25770 0.93497 0.94295 1.00207 1.69994 1.31571 1.01717 1.33645 0.86261 0.79856 0.79032 0.80733 1.18957 1.20242 1.18955 1.84555 1.68850 1.12714 1.09847 1.21013 0.92048 0.99534 1.03469 1.17511 0.89993 0.80882 1.03841 1.91476 1.80365 1.46082 1.93956 0.91030 0.91288 0.91042 0.85183 0.85455 0.89997 0.89200 0.82112 0.76193 0.91302 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.84 36.00 0.35 -0.61 16 2 C -0.13 -1.40 5.89 -104.56 -0.62 -2.02 16 3 C -0.09 -0.91 9.70 -39.59 -0.38 -1.30 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.05 -0.56 5.11 -104.64 -0.54 -1.09 16 6 C 0.01 0.17 5.88 -29.03 -0.17 0.00 16 7 C -0.28 -4.26 5.84 -35.73 -0.21 -4.47 16 8 C 0.10 1.78 11.17 -19.22 -0.21 1.57 16 9 N -0.49 -11.53 8.65 -13.94 -0.12 -11.65 16 10 C 0.36 7.83 8.26 -87.80 -0.72 7.11 16 11 N -0.64 -14.40 5.35 -14.63 -0.08 -14.47 16 12 C 0.53 14.76 7.51 -15.12 -0.11 14.65 16 13 O -0.51 -16.54 13.50 5.05 0.07 -16.48 16 14 C -0.53 -14.22 9.29 -37.72 -0.35 -14.57 16 15 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 16 C 0.09 2.28 5.50 -17.34 -0.10 2.18 16 17 N -0.74 -21.33 11.72 55.56 0.65 -20.68 16 18 Si 0.92 18.96 29.56 -169.99 -5.02 13.93 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 22 S -0.01 -0.12 23.44 -107.50 -2.52 -2.64 16 23 C -0.14 -1.72 9.68 -39.51 -0.38 -2.10 16 24 C 0.10 1.21 7.24 -39.42 -0.29 0.92 16 25 F -0.14 -1.83 16.48 2.25 0.04 -1.80 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.62 7.64 -51.93 -0.40 0.22 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.16 2.57 8.06 -52.48 -0.42 2.15 16 34 H 0.40 7.43 8.77 -40.82 -0.36 7.07 16 35 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -34.51 337.80 -9.68 -44.19 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.67 Total: 5.88 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -4.11 Total: -1.38 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.45 Total: -46.80 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.07 Total: -16.48 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.52 Total: -2.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.51 -9.68 -44.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132025457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds