Wall clock time and date at job start Tue Mar 31 2020 13:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38226 * 120.01604 * 2 1 4 4 C 1.38220 * 120.02826 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.05325 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.98807 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99706 * 6 5 4 8 8 C 1.34214 * 125.90000 * 89.71686 * 7 6 5 9 9 N 1.31245 * 115.74799 * 179.81494 * 8 7 6 10 10 C 1.30352 * 117.06177 * 0.49164 * 9 8 7 11 11 N 1.37919 * 125.43601 * 179.71540 * 10 9 8 12 12 C 1.34775 * 119.99999 * 0.02562 * 11 10 9 13 13 O 1.21855 * 120.00239 * 0.02562 * 12 11 10 14 14 C 1.41240 * 119.99885 * 179.97438 * 12 11 10 15 15 H 1.07995 * 120.00097 * 0.02562 * 14 12 11 16 16 C 1.40162 * 119.99709 * 179.97438 * 14 12 11 17 17 N 1.30621 * 120.00085 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99517 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47330 * 60.00121 * 18 16 14 20 20 H 1.48504 * 109.46927 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47218 * 299.99958 * 18 16 14 22 22 S 1.76162 * 109.12390 * 359.73342 * 10 9 8 23 23 C 1.38176 * 120.02559 * 0.25013 * 5 4 3 24 24 C 1.38436 * 120.01820 * 180.02562 * 2 1 3 25 25 F 1.35110 * 120.02224 * 359.95740 * 24 2 1 26 26 H 1.09000 * 109.46879 * 90.00044 * 1 2 3 27 27 H 1.09004 * 109.46782 * 209.99352 * 1 2 3 28 28 H 1.08995 * 109.47369 * 329.99716 * 1 2 3 29 29 H 1.08005 * 119.97870 * 0.02917 * 3 2 1 30 30 H 1.07997 * 119.97001 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 329.99799 * 6 5 4 32 32 H 1.09001 * 109.46980 * 209.99899 * 6 5 4 33 33 H 1.08003 * 122.12800 * 359.97438 * 8 7 6 34 34 H 0.96998 * 119.99597 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99525 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.01471 * 179.71287 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0028 7 6 6.2837 0.0028 1.4177 8 6 6.5430 -1.0844 2.1608 9 7 6.9790 -0.8530 3.3769 10 6 7.1035 0.3942 3.7350 11 7 7.5390 0.8325 4.9680 12 6 7.8775 -0.0600 5.9195 13 8 7.7994 -1.2542 5.6901 14 6 8.3239 0.3889 7.1820 15 1 8.3936 1.4472 7.3852 16 6 8.6755 -0.5394 8.1716 17 7 8.5908 -1.8195 7.9261 18 14 9.2653 0.0544 9.8417 19 1 8.2033 0.8735 10.4792 20 1 9.5725 -1.1158 10.7029 21 1 10.4895 0.8774 9.6705 22 16 6.6264 1.4304 2.3926 23 6 3.5843 -1.1971 -0.0074 24 6 2.1995 -1.1987 -0.0005 25 9 1.5248 -2.3692 -0.0002 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6583 2.1322 0.0005 30 1 4.1199 2.1328 -0.0010 31 1 6.1421 0.8933 -0.5165 32 1 6.1444 -0.8866 -0.5173 33 1 6.4044 -2.0860 1.7813 34 1 7.6015 1.7831 5.1505 35 1 8.8338 -2.4618 8.6111 36 1 4.1256 -2.1317 -0.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132025457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:46 Heat of formation + Delta-G solvation = -37.819131 kcal Electronic energy + Delta-G solvation = -22792.131091 eV Core-core repulsion = 19088.460398 eV Total energy + Delta-G solvation = -3703.670693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91368 -40.86753 -40.23514 -39.10873 -35.84997 -35.01602 -34.44818 -31.98453 -31.48859 -29.44626 -28.19075 -26.15885 -24.84711 -23.81262 -22.98426 -21.98643 -20.38577 -19.98637 -18.36735 -17.99260 -17.58004 -17.34890 -17.08877 -16.69869 -16.60717 -16.01956 -15.83420 -15.46727 -15.07535 -14.66322 -14.53262 -14.39194 -14.30824 -14.05496 -13.86792 -13.59166 -13.25459 -13.01858 -12.76949 -12.74652 -12.57189 -12.43132 -12.07041 -12.05437 -11.96631 -11.34169 -10.90207 -10.56555 -10.09604 -9.83827 -9.67423 -9.46492 -8.74040 -8.39930 -7.06897 -0.12092 0.09497 0.23140 0.28701 0.83303 1.40579 1.43065 1.56784 2.06418 2.20118 2.47364 2.58533 2.70277 3.27195 3.63060 3.71901 3.78854 3.94024 4.00802 4.14290 4.19343 4.27519 4.44181 4.66561 4.73029 4.75735 4.84332 4.91158 5.07141 5.17318 5.18628 5.21021 5.25072 5.40479 5.55679 5.69486 5.87993 5.96928 6.02953 6.68831 6.92135 7.43259 8.35696 8.53788 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002739 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.102700 B =10218.808696 C =10577.963111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.132 4.132 3 C -0.092 4.092 4 C -0.119 4.119 5 C -0.061 4.061 6 C 0.015 3.985 7 C -0.241 4.241 8 C 0.053 3.947 9 N -0.543 5.543 10 C 0.304 3.696 11 N -0.641 5.641 12 C 0.518 3.482 13 O -0.575 6.575 14 C -0.558 4.558 15 H 0.099 0.901 16 C 0.029 3.971 17 N -0.800 5.800 18 Si 1.007 2.993 19 H -0.251 1.251 20 H -0.275 1.275 21 H -0.250 1.250 22 S 0.091 5.909 23 C -0.154 4.154 24 C 0.068 3.932 25 F -0.151 7.151 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.420 0.580 35 H 0.280 0.720 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 10.758 -16.613 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.109 4.109 4 C -0.137 4.137 5 C -0.062 4.062 6 C -0.025 4.025 7 C -0.364 4.364 8 C -0.098 4.098 9 N -0.266 5.266 10 C -0.064 4.064 11 N -0.291 5.291 12 C 0.325 3.675 13 O -0.456 6.456 14 C -0.593 4.593 15 H 0.117 0.883 16 C -0.189 4.189 17 N -0.428 5.428 18 Si 0.825 3.175 19 H -0.174 1.174 20 H -0.199 1.199 21 H -0.174 1.174 22 S 0.340 5.660 23 C -0.173 4.173 24 C 0.049 3.951 25 F -0.130 7.130 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.178 0.822 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.190 0.810 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.632 10.363 -16.366 22.097 hybrid contribution 0.119 -1.154 0.692 1.351 sum -10.513 9.209 -15.674 21.000 Atomic orbital electron populations 1.20772 0.88899 1.03712 1.03559 1.20281 0.98237 0.91880 1.02914 1.21242 0.94060 0.97630 0.98000 1.21408 0.94534 0.98261 0.99545 1.19738 0.95665 0.92515 0.98241 1.18977 0.89335 1.06201 0.87965 1.25620 1.15266 0.92945 1.02563 1.21762 0.99506 1.00814 0.87745 1.66642 1.23132 1.18535 1.18273 1.25147 0.98005 0.90848 0.92438 1.43667 1.65131 1.11529 1.08819 1.17613 0.79688 0.85389 0.84825 1.90762 1.57397 1.16982 1.80500 1.20448 1.46013 0.96222 0.96645 0.88286 1.27118 0.92724 0.94022 1.05084 1.70179 1.33290 1.03746 1.35627 0.84934 0.79830 0.78588 0.74165 1.17447 1.19939 1.17367 1.84097 1.66257 1.09979 1.05631 1.21179 0.92238 1.00175 1.03659 1.17842 0.90456 0.81259 1.05549 1.91442 1.80558 1.46773 1.94228 0.89632 0.92281 0.89213 0.82208 0.83317 0.87167 0.87263 0.81047 0.74268 0.90951 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.84 71.23 0.70 -1.01 16 2 C -0.13 -2.64 5.89 -19.82 -0.12 -2.76 16 3 C -0.09 -1.52 9.70 22.26 0.22 -1.31 16 4 C -0.12 -2.11 9.70 22.27 0.22 -1.89 16 5 C -0.06 -1.26 5.11 -19.87 -0.10 -1.36 16 6 C 0.01 0.29 5.88 29.10 0.17 0.46 16 7 C -0.24 -6.92 5.84 24.77 0.14 -6.78 16 8 C 0.05 1.99 11.17 83.86 0.94 2.92 16 9 N -0.54 -26.58 8.65 -198.01 -1.71 -28.29 16 10 C 0.30 13.40 8.26 179.36 1.48 14.88 16 11 N -0.64 -29.74 5.35 -318.34 -1.70 -31.45 16 12 C 0.52 30.19 7.51 84.98 0.64 30.83 16 13 O -0.57 -39.26 13.50 -4.84 -0.07 -39.33 16 14 C -0.56 -30.42 9.29 23.48 0.22 -30.20 16 15 H 0.10 4.63 7.85 -2.91 -0.02 4.61 16 16 C 0.03 1.56 5.50 85.34 0.47 2.03 16 17 N -0.80 -48.11 11.72 21.86 0.26 -47.85 16 18 Si 1.01 38.91 29.56 68.60 2.03 40.94 16 19 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 22 S 0.09 2.70 23.44 -56.49 -1.32 1.38 16 23 C -0.15 -3.58 9.68 22.31 0.22 -3.37 16 24 C 0.07 1.66 7.24 22.38 0.16 1.82 16 25 F -0.15 -4.02 16.48 44.97 0.74 -3.28 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.01 7.64 -2.38 -0.02 0.99 16 28 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 29 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 32 H 0.11 1.77 8.08 -2.39 -0.02 1.75 16 33 H 0.17 5.70 8.06 -2.91 -0.02 5.68 16 34 H 0.42 15.59 8.77 -92.71 -0.81 14.78 16 35 H 0.28 15.21 8.29 -92.71 -0.77 14.44 16 36 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -81.35 337.80 3.90 -77.46 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.33 Total: 26.14 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.35 Total: 4.28 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.16 Total: -107.59 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.07 Total: -39.33 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.74 Total: -3.28 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.38 kcal Total: -81.35 3.90 -77.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132025457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.636 kcal (2) G-P(sol) polarization free energy of solvation -81.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds