Wall clock time and date at job start Tue Mar 31 2020 12:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29322 * 1 3 3 Si 1.86797 * 120.00468 * 2 1 4 4 H 1.48495 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46846 * 300.00230 * 3 2 1 6 6 H 1.48501 * 109.47033 * 59.99709 * 3 2 1 7 7 C 1.46792 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99776 * 188.59112 * 7 2 1 9 9 N 1.33308 * 120.00124 * 8.59432 * 7 2 1 10 10 C 1.34773 * 119.99996 * 44.11733 * 9 7 2 11 11 O 1.21515 * 120.00246 * 4.63580 * 10 9 7 12 12 C 1.47433 * 120.00019 * 184.63237 * 10 9 7 13 13 C 1.39863 * 120.09131 * 318.78005 * 12 10 9 14 14 C 1.38038 * 119.90004 * 179.97438 * 13 12 10 15 15 C 1.39635 * 119.98764 * 359.97438 * 14 13 12 16 16 C 1.38865 * 120.06812 * 359.97438 * 15 14 13 17 17 N 1.48022 * 119.88213 * 179.71968 * 16 15 14 18 18 O 1.31702 * 119.99420 * 179.97438 * 17 16 15 19 19 O 1.31693 * 120.00412 * 0.02562 * 17 16 15 20 20 C 1.37752 * 120.22647 * 0.02562 * 16 15 14 21 21 O 1.36343 * 108.57309 * 179.97438 * 15 14 13 22 22 C 1.43956 * 105.54019 * 342.65275 * 21 15 14 23 23 O 1.36533 * 131.42966 * 179.97438 * 14 13 12 24 24 C 1.46493 * 119.99899 * 224.12167 * 9 7 2 25 25 C 1.52999 * 117.50184 * 5.26752 * 24 9 7 26 26 C 1.52994 * 60.00023 * 252.51236 * 25 24 9 27 27 H 0.96999 * 119.99299 * 5.00220 * 1 2 3 28 28 H 1.08004 * 120.04542 * 0.02562 * 13 12 10 29 29 H 1.08002 * 119.99775 * 180.02562 * 20 16 15 30 30 H 1.09002 * 110.56660 * 268.67095 * 22 21 15 31 31 H 1.09002 * 110.68797 * 145.88533 * 22 21 15 32 32 H 1.08999 * 115.55057 * 150.97039 * 24 9 7 33 33 H 1.09003 * 117.49782 * 0.02562 * 25 24 9 34 34 H 1.09001 * 117.50333 * 145.01739 * 25 24 9 35 35 H 1.09008 * 117.49534 * 252.51139 * 26 25 24 36 36 H 1.08998 * 117.52293 * 107.48305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2273 1.6176 0.0000 4 1 3.6873 1.3462 0.0006 5 1 1.8686 2.3964 -1.2125 6 1 1.8686 2.3964 1.2125 7 6 2.0271 -1.2713 0.0006 8 1 3.0979 -1.2765 0.1403 9 7 1.3717 -2.4194 -0.1714 10 6 0.4240 -2.5180 -1.1246 11 8 0.2252 -1.5890 -1.8823 12 6 -0.3715 -3.7531 -1.2481 13 6 0.2455 -5.0011 -1.1136 14 6 -0.5032 -6.1549 -1.2294 15 6 -1.8746 -6.0749 -1.4800 16 6 -2.4864 -4.8353 -1.6123 17 7 -3.9393 -4.7553 -1.8841 18 8 -4.5220 -3.5809 -2.0095 19 8 -4.6494 -5.8584 -1.9995 20 6 -1.7449 -3.6801 -1.4978 21 8 -2.3779 -7.3401 -1.5499 22 6 -1.2390 -8.1978 -1.7486 23 8 -0.1529 -7.4717 -1.1427 24 6 1.6816 -3.5737 0.6757 25 6 2.6769 -3.3643 1.8186 26 6 3.0907 -4.1619 0.5803 27 1 -0.4849 0.8369 -0.0733 28 1 1.3060 -5.0617 -0.9185 29 1 -2.2246 -2.7180 -1.6010 30 1 -1.0536 -8.3479 -2.8122 31 1 -1.3856 -9.1548 -1.2479 32 1 0.8575 -4.2664 0.8462 33 1 3.1009 -2.3676 1.9405 34 1 2.5077 -3.9193 2.7414 35 1 3.1937 -5.2417 0.6884 36 1 3.7872 -3.6903 -0.1130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272442674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:32 Heat of formation + Delta-G solvation = 21.374283 kcal Electronic energy + Delta-G solvation = -27263.578697 eV Core-core repulsion = 23107.349162 eV Total energy + Delta-G solvation = -4156.229535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.63286 -39.69584 -38.88109 -37.24316 -36.64010 -36.18784 -34.19044 -33.10877 -31.96218 -31.22679 -30.32777 -26.70151 -26.32732 -25.29914 -23.45236 -22.78825 -21.95669 -21.37474 -20.22243 -18.72261 -18.69976 -18.01634 -17.50881 -17.07898 -16.55102 -16.20570 -16.06922 -15.67760 -14.96596 -14.79734 -14.55731 -14.29775 -13.86538 -13.70287 -13.33173 -13.31405 -13.00453 -12.87471 -12.12116 -12.02411 -11.47358 -11.33225 -11.16978 -11.15614 -11.04549 -10.95981 -10.78046 -10.48904 -10.35480 -10.19000 -10.02274 -9.35242 -9.07030 -8.52681 -8.31930 -7.49580 -6.43184 -4.03535 -0.58169 0.64185 1.07630 1.18465 2.27266 2.95778 2.97354 3.12829 3.20484 3.23530 3.86221 3.96940 4.07286 4.30423 4.38372 4.44801 4.55346 4.72790 4.77722 4.89431 4.91103 5.09510 5.19918 5.34719 5.47567 5.51593 5.62256 5.79430 5.86599 6.01612 6.05747 6.12658 6.24884 6.50198 6.63310 6.72882 6.91558 7.23158 7.88093 8.59114 8.92381 9.26873 10.03340 10.55084 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.004839 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.685924 B = 5784.480126 C = 7294.047976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.493 3.507 11 O -0.518 6.518 12 C -0.073 4.073 13 C -0.037 4.037 14 C 0.027 3.973 15 C 0.093 3.907 16 C 0.010 3.990 17 N -0.013 5.013 18 O -0.169 6.169 19 O -0.166 6.166 20 C -0.007 4.007 21 O -0.279 6.279 22 C 0.208 3.792 23 O -0.296 6.296 24 C 0.048 3.952 25 C -0.169 4.169 26 C -0.206 4.206 27 H 0.277 0.723 28 H 0.165 0.835 29 H 0.176 0.824 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -13.228 0.199 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.151 4.151 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.499 4.499 8 H 0.107 0.893 9 N -0.098 5.098 10 C 0.282 3.718 11 O -0.396 6.396 12 C -0.078 4.078 13 C -0.057 4.057 14 C -0.018 4.018 15 C 0.045 3.955 16 C -0.078 4.078 17 N 0.466 4.534 18 O -0.362 6.362 19 O -0.361 6.361 20 C -0.027 4.027 21 O -0.193 6.193 22 C 0.096 3.904 23 O -0.212 6.212 24 C -0.057 4.057 25 C -0.206 4.206 26 C -0.245 4.245 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.194 0.806 30 H 0.109 0.891 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.427 -12.856 0.093 13.083 hybrid contribution -0.268 0.365 -0.001 0.453 sum 2.159 -12.491 0.092 12.677 Atomic orbital electron populations 1.68826 1.08154 1.29394 1.35094 1.26926 0.94424 0.99906 0.93824 0.86030 0.80239 0.81339 0.77938 1.18904 1.20287 1.20685 1.19796 0.91121 0.81936 1.57088 0.89312 1.41496 1.33897 1.09034 1.25350 1.17175 0.85397 0.85503 0.83708 1.90649 1.67908 1.38251 1.42805 1.20480 0.92616 0.95118 0.99614 1.21093 1.01911 0.87337 0.95332 1.19375 0.90552 0.86038 1.05820 1.19336 0.91433 0.85397 0.99384 1.19247 0.78759 0.92004 1.17766 1.50269 1.03749 1.02875 0.96552 1.96303 1.73934 1.09996 1.55930 1.96276 1.64118 1.19983 1.55700 1.21107 0.92878 0.97281 0.91413 1.87551 1.31523 1.12682 1.87527 1.25837 0.71455 0.93066 1.00006 1.87450 1.43003 1.13295 1.77494 1.22244 0.91784 0.93658 0.98055 1.23116 1.03448 1.02268 0.91795 1.23391 0.99973 0.98718 1.02435 0.91060 0.81715 0.80624 0.89081 0.84223 0.87577 0.87146 0.89515 0.89365 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.07 11.27 56.00 0.63 -20.44 16 2 C 0.07 1.75 4.84 -15.15 -0.07 1.68 16 3 Si 0.92 19.66 29.66 -169.99 -5.04 14.62 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.37 -9.09 8.04 -13.45 -0.11 -9.20 16 8 H 0.09 2.09 7.35 -52.49 -0.39 1.71 16 9 N -0.38 -8.58 2.80 -107.41 -0.30 -8.88 16 10 C 0.49 11.49 6.46 -12.52 -0.08 11.41 16 11 O -0.52 -14.14 14.55 5.35 0.08 -14.06 16 12 C -0.07 -1.37 5.28 -104.97 -0.55 -1.92 16 13 C -0.04 -0.57 7.49 -39.05 -0.29 -0.86 16 14 C 0.03 0.39 7.13 -39.13 -0.28 0.11 16 15 C 0.09 1.44 6.78 -38.83 -0.26 1.18 16 16 C 0.01 0.17 6.89 -79.89 -0.55 -0.38 16 17 N -0.01 -0.24 4.98 33.99 0.17 -0.07 16 18 O -0.17 -3.35 19.13 -31.57 -0.60 -3.95 16 19 O -0.17 -3.15 18.71 -37.18 -0.70 -3.85 16 20 C -0.01 -0.12 9.17 -39.18 -0.36 -0.48 16 21 O -0.28 -3.83 10.43 -50.74 -0.53 -4.36 16 22 C 0.21 1.89 8.88 101.05 0.90 2.79 16 23 O -0.30 -3.52 11.41 -45.79 -0.52 -4.04 16 24 C 0.05 0.84 4.38 -67.94 -0.30 0.54 16 25 C -0.17 -2.66 9.78 -26.73 -0.26 -2.92 16 26 C -0.21 -3.01 9.50 -26.74 -0.25 -3.26 16 27 H 0.28 7.06 8.27 -40.82 -0.34 6.72 16 28 H 0.17 2.31 5.51 -52.48 -0.29 2.03 16 29 H 0.18 3.46 7.56 -52.49 -0.40 3.06 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.74 5.89 -51.93 -0.31 1.43 16 33 H 0.11 1.92 6.78 -51.93 -0.35 1.57 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 36 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -30.85 320.95 -7.43 -38.28 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -2.98 Total: 3.23 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.48 Total: -1.32 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.50 Total: -29.40 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -2.27 Total: -30.26 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.04 Total: 14.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.85 -7.43 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272442674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.659 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds