Wall clock time and date at job start Tue Mar 31 2020 12:35:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86809 * 119.99835 * 2 1
4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1
6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1
7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2
11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7
12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9
13 13 O 1.21623 * 120.00244 * 359.72094 * 12 11 10
14 14 C 1.47308 * 119.99758 * 179.72404 * 12 11 10
15 15 C 1.35179 * 122.42801 * 179.73288 * 14 12 11
16 16 S 1.71015 * 109.11403 * 179.89952 * 15 14 12
17 17 C 1.76006 * 90.57408 * 0.30112 * 16 15 14
18 18 C 1.47893 * 125.31314 * 179.82538 * 17 16 15
19 19 C 1.39546 * 120.11147 * 179.72438 * 18 17 16
20 20 C 1.37917 * 119.88727 * 179.71544 * 19 18 17
21 21 C 1.38589 * 120.10734 * 0.55726 * 20 19 18
22 22 F 1.35100 * 119.88406 * 179.69310 * 21 20 19
23 23 C 1.38586 * 120.23421 * 359.71850 * 21 20 19
24 24 C 1.37917 * 120.11255 * 0.02562 * 23 21 20
25 25 N 1.29848 * 109.36496 * 359.82335 * 17 16 15
26 26 H 0.96999 * 120.00239 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.47322 * 60.00361 * 9 7 2
28 28 H 1.09006 * 109.46960 * 299.99918 * 9 7 2
29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7
30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7
31 31 H 0.97001 * 119.99790 * 359.97438 * 11 10 9
32 32 H 1.08003 * 125.44420 * 0.02568 * 15 14 12
33 33 H 1.08002 * 120.05835 * 359.97438 * 19 18 17
34 34 H 1.07993 * 119.94720 * 180.24892 * 20 19 18
35 35 H 1.07997 * 119.94476 * 179.97438 * 23 21 20
36 36 H 1.07994 * 120.05614 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3466 0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8903 2.3966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 7 1.5130 -4.9308 -0.0001
12 6 2.1870 -6.0979 0.0055
13 8 3.4032 -6.0979 0.0059
14 6 1.4505 -7.3737 0.0110
15 6 2.0763 -8.5719 0.0114
16 16 0.9032 -9.8162 0.0213
17 6 -0.3895 -8.6218 0.0151
18 6 -1.8364 -8.9281 0.0155
19 6 -2.7713 -7.8920 0.0161
20 6 -4.1194 -8.1829 0.0105
21 6 -4.5462 -9.5014 0.0159
22 9 -5.8679 -9.7811 0.0167
23 6 -3.6219 -10.5340 0.0211
24 6 -2.2715 -10.2539 0.0214
25 7 0.1256 -7.4299 0.0103
26 1 -0.4850 0.8400 -0.0004
27 1 0.6249 -2.5571 -0.8897
28 1 0.6242 -2.5567 0.8904
29 1 2.8722 -3.6042 0.8906
30 1 2.8722 -3.6042 -0.8894
31 1 0.5430 -4.9308 0.0000
32 1 3.1461 -8.7198 0.0082
33 1 -2.4397 -6.8642 0.0167
34 1 -4.8437 -7.3819 0.0069
35 1 -3.9597 -11.5598 0.0258
36 1 -1.5520 -11.0593 0.0251
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000342621826.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:35:35
Heat of formation + Delta-G solvation = -23.934175 kcal
Electronic energy + Delta-G solvation = -22290.151403 eV
Core-core repulsion = 18587.082807 eV
Total energy + Delta-G solvation = -3703.068596 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-49.28623 -40.52868 -39.35811 -38.20294 -34.93389 -32.85075 -32.47723 -31.66318
-29.80770 -29.43704 -26.23322 -24.76051 -23.63644 -23.22828 -21.28875 -20.83902
-19.54003 -18.85207 -18.04038 -16.78255 -16.51083 -16.47369 -16.25969 -15.98462
-15.46805 -15.06941 -14.71512 -14.47263 -14.37907 -14.07276 -13.96236 -13.55268
-13.20865 -13.09362 -12.73746 -12.61800 -12.33699 -12.14615 -11.48402 -11.20386
-11.05478 -10.63534 -10.35536 -10.21818 -10.21098 -9.99847 -9.62406 -9.58377
-9.54593 -9.23580 -8.61447 -8.46167 -8.32861 -6.08702 -4.11603 -0.16980
0.79309 0.87153 0.87413 1.29044 2.01154 3.19358 3.28784 3.36041
3.39403 3.42660 3.55615 3.76469 3.82053 4.30849 4.39568 4.42488
4.56879 4.76545 4.91951 5.02249 5.11729 5.28358 5.38460 5.45999
5.62181 5.68908 5.84110 5.93707 6.31689 6.32605 6.37312 6.71296
6.84997 7.18739 7.52967 7.62218 7.89221 7.99033 8.26926 8.54232
8.94430 9.53160 11.02907
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.012957 B = 0.002744 C = 0.002268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.547910 B =10201.912282 C =12342.001661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.059 3.941
3 Si 0.896 3.104
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.521 4.521
8 H 0.060 0.940
9 C 0.012 3.988
10 C 0.120 3.880
11 N -0.699 5.699
12 C 0.580 3.420
13 O -0.545 6.545
14 C 0.023 3.977
15 C -0.214 4.214
16 S 0.170 5.830
17 C 0.089 3.911
18 C -0.034 4.034
19 C -0.041 4.041
20 C -0.151 4.151
21 C 0.112 3.888
22 F -0.136 7.136
23 C -0.152 4.152
24 C -0.071 4.071
25 N -0.428 5.428
26 H 0.261 0.739
27 H 0.024 0.976
28 H 0.024 0.976
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.407 0.593
32 H 0.193 0.807
33 H 0.151 0.849
34 H 0.145 0.855
35 H 0.142 0.858
36 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.596 -25.512 0.057 26.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.143 4.143
3 Si 0.724 3.276
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.560 4.560
8 H 0.078 0.922
9 C -0.025 4.025
10 C -0.002 4.002
11 N -0.348 5.348
12 C 0.362 3.638
13 O -0.423 6.423
14 C -0.113 4.113
15 C -0.356 4.356
16 S 0.429 5.571
17 C -0.187 4.187
18 C -0.038 4.038
19 C -0.062 4.062
20 C -0.170 4.170
21 C 0.092 3.908
22 F -0.115 7.115
23 C -0.171 4.171
24 C -0.092 4.092
25 N -0.143 5.143
26 H 0.071 0.929
27 H 0.042 0.958
28 H 0.042 0.958
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.242 0.758
32 H 0.210 0.790
33 H 0.168 0.832
34 H 0.163 0.837
35 H 0.160 0.840
36 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -7.114 -25.968 0.060 26.925
hybrid contribution 0.256 1.710 -0.004 1.729
sum -6.858 -24.258 0.057 25.209
Atomic orbital electron populations
1.69966 1.06076 1.26758 1.50391 1.24998 0.94892 0.99404 0.95003
0.86460 0.80158 0.83357 0.77613 1.19592 1.20932 1.20936 1.21078
0.93272 0.90321 1.51294 0.92167 1.19334 0.94186 0.90975 0.98020
1.21830 0.96171 0.81194 1.01020 1.46200 1.11263 1.05908 1.71433
1.17153 0.86481 0.82456 0.77719 1.90790 1.12687 1.87138 1.51696
1.20383 0.88003 0.95652 1.07212 1.26569 1.06845 0.95505 1.06638
1.83646 0.96487 1.10736 1.66231 1.25734 0.97245 0.90257 1.05430
1.17809 0.87494 0.93782 1.04670 1.21251 0.90878 1.00294 0.93799
1.21214 0.97002 0.95298 1.03461 1.17906 0.77714 0.93925 1.01253
1.91526 1.31874 1.94484 1.93584 1.20982 0.92333 0.99415 1.04338
1.20959 0.95412 0.95008 0.97772 1.66928 1.10174 1.23380 1.13775
0.92893 0.95818 0.95815 0.92244 0.92240 0.75819 0.79014 0.83155
0.83718 0.83987 0.84706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16
4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16
8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16
9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16
10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16
11 N -0.70 -13.20 5.55 -61.42 -0.34 -13.54 16
12 C 0.58 10.63 7.79 -12.57 -0.10 10.53 16
13 O -0.54 -11.37 16.65 5.26 0.09 -11.28 16
14 C 0.02 0.35 6.64 -84.93 -0.56 -0.22 16
15 C -0.21 -2.53 10.56 29.64 0.31 -2.22 16
16 S 0.17 1.46 22.12 -107.50 -2.38 -0.92 16
17 C 0.09 0.97 7.32 -14.44 -0.11 0.87 16
18 C -0.03 -0.31 5.87 -104.97 -0.62 -0.93 16
19 C -0.04 -0.38 9.67 -39.21 -0.38 -0.76 16
20 C -0.15 -1.25 10.01 -39.57 -0.40 -1.65 16
21 C 0.11 0.92 7.30 -39.32 -0.29 0.64 16
22 F -0.14 -1.23 17.26 2.25 0.04 -1.19 16
23 C -0.15 -1.02 10.01 -39.57 -0.40 -1.42 16
24 C -0.07 -0.50 9.60 -39.21 -0.38 -0.87 16
25 N -0.43 -5.85 9.61 -8.10 -0.08 -5.92 16
26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16
30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
31 H 0.41 7.13 7.95 -40.82 -0.32 6.81 16
32 H 0.19 2.06 7.99 -52.48 -0.42 1.64 16
33 H 0.15 1.47 7.81 -52.49 -0.41 1.06 16
34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16
35 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16
36 H 0.14 0.64 7.29 -52.49 -0.38 0.26 16
LS Contribution 341.17 15.07 5.14 5.14
Total: -1.00 -32.10 341.17 -8.91 -41.01
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: -3.61 Total: 2.28 kcal
Atomic # 6 Polarization: -3.07 SS G_CDS: -3.48 Total: -6.55 kcal
Atomic # 7 Polarization: -45.24 SS G_CDS: 0.32 Total: -44.92 kcal
Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal
Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Atomic # 16 Polarization: 1.46 SS G_CDS: -2.38 Total: -0.92 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -32.10 -8.91 -41.01 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000342621826.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.079 kcal
(2) G-P(sol) polarization free energy of solvation -32.103 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds