Wall clock time and date at job start Tue Mar 31 2020 12:35:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86809 * 119.99835 * 2 1
4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1
6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1
7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2
11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7
12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9
13 13 O 1.21623 * 120.00244 * 359.72094 * 12 11 10
14 14 C 1.47308 * 119.99758 * 179.72404 * 12 11 10
15 15 C 1.35179 * 122.42801 * 179.73288 * 14 12 11
16 16 S 1.71015 * 109.11403 * 179.89952 * 15 14 12
17 17 C 1.76006 * 90.57408 * 0.30112 * 16 15 14
18 18 C 1.47893 * 125.31314 * 179.82538 * 17 16 15
19 19 C 1.39546 * 120.11147 * 179.72438 * 18 17 16
20 20 C 1.37917 * 119.88727 * 179.71544 * 19 18 17
21 21 C 1.38589 * 120.10734 * 0.55726 * 20 19 18
22 22 F 1.35100 * 119.88406 * 179.69310 * 21 20 19
23 23 C 1.38586 * 120.23421 * 359.71850 * 21 20 19
24 24 C 1.37917 * 120.11255 * 0.02562 * 23 21 20
25 25 N 1.29848 * 109.36496 * 359.82335 * 17 16 15
26 26 H 0.96999 * 120.00239 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.47322 * 60.00361 * 9 7 2
28 28 H 1.09006 * 109.46960 * 299.99918 * 9 7 2
29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7
30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7
31 31 H 0.97001 * 119.99790 * 359.97438 * 11 10 9
32 32 H 1.08003 * 125.44420 * 0.02568 * 15 14 12
33 33 H 1.08002 * 120.05835 * 359.97438 * 19 18 17
34 34 H 1.07993 * 119.94720 * 180.24892 * 20 19 18
35 35 H 1.07997 * 119.94476 * 179.97438 * 23 21 20
36 36 H 1.07994 * 120.05614 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3466 0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8903 2.3966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 7 1.5130 -4.9308 -0.0001
12 6 2.1870 -6.0979 0.0055
13 8 3.4032 -6.0979 0.0059
14 6 1.4505 -7.3737 0.0110
15 6 2.0763 -8.5719 0.0114
16 16 0.9032 -9.8162 0.0213
17 6 -0.3895 -8.6218 0.0151
18 6 -1.8364 -8.9281 0.0155
19 6 -2.7713 -7.8920 0.0161
20 6 -4.1194 -8.1829 0.0105
21 6 -4.5462 -9.5014 0.0159
22 9 -5.8679 -9.7811 0.0167
23 6 -3.6219 -10.5340 0.0211
24 6 -2.2715 -10.2539 0.0214
25 7 0.1256 -7.4299 0.0103
26 1 -0.4850 0.8400 -0.0004
27 1 0.6249 -2.5571 -0.8897
28 1 0.6242 -2.5567 0.8904
29 1 2.8722 -3.6042 0.8906
30 1 2.8722 -3.6042 -0.8894
31 1 0.5430 -4.9308 0.0000
32 1 3.1461 -8.7198 0.0082
33 1 -2.4397 -6.8642 0.0167
34 1 -4.8437 -7.3819 0.0069
35 1 -3.9597 -11.5598 0.0258
36 1 -1.5520 -11.0593 0.0251
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000342621826.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:35:35
Heat of formation + Delta-G solvation = -44.034427 kcal
Electronic energy + Delta-G solvation = -22291.023016 eV
Core-core repulsion = 18587.082807 eV
Total energy + Delta-G solvation = -3703.940209 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-49.94652 -41.61306 -40.23916 -39.31131 -36.69285 -34.85373 -33.28912 -32.26361
-31.66049 -30.32539 -27.64422 -26.16490 -24.61567 -24.07726 -22.83013 -22.13368
-20.64434 -19.88059 -18.72146 -18.50405 -17.72186 -17.44283 -17.12798 -16.81869
-16.61951 -16.48141 -16.46605 -15.70565 -15.49295 -15.00506 -14.69824 -14.67557
-14.56420 -14.32544 -14.03794 -13.42711 -13.41334 -13.24953 -13.08557 -12.96857
-12.53709 -12.29675 -12.08299 -11.75364 -11.52026 -11.19278 -11.05772 -10.98508
-10.62959 -10.42865 -10.18429 -10.09019 -9.21853 -8.25014 -6.36139 -0.95663
0.02282 0.07352 0.20562 0.40142 1.00976 1.40802 1.41306 1.54896
2.18514 2.20417 2.42705 2.61596 2.71761 3.09537 3.19092 3.56326
3.73600 3.87231 4.03409 4.12499 4.19452 4.27960 4.41823 4.44009
4.64961 4.79931 4.83089 4.92960 5.05859 5.17174 5.19348 5.28667
5.43928 5.53631 5.75627 5.76547 6.12910 6.22583 6.56959 6.76951
7.06912 7.33284 8.87277
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.012957 B = 0.002744 C = 0.002268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.547910 B =10201.912282 C =12342.001661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.006 3.994
3 Si 0.968 3.032
4 H -0.264 1.264
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.546 4.546
8 H 0.061 0.939
9 C 0.023 3.977
10 C 0.139 3.861
11 N -0.701 5.701
12 C 0.580 3.420
13 O -0.576 6.576
14 C -0.007 4.007
15 C -0.221 4.221
16 S 0.284 5.716
17 C 0.074 3.926
18 C -0.049 4.049
19 C -0.056 4.056
20 C -0.156 4.156
21 C 0.103 3.897
22 F -0.142 7.142
23 C -0.142 4.142
24 C -0.061 4.061
25 N -0.458 5.458
26 H 0.266 0.734
27 H 0.006 0.994
28 H 0.006 0.994
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.412 0.588
32 H 0.201 0.799
33 H 0.136 0.864
34 H 0.151 0.849
35 H 0.172 0.828
36 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.529 -27.983 0.067 28.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.193 4.193
3 Si 0.792 3.208
4 H -0.188 1.188
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.584 4.584
8 H 0.080 0.920
9 C -0.014 4.014
10 C 0.016 3.984
11 N -0.350 5.350
12 C 0.365 3.635
13 O -0.457 6.457
14 C -0.143 4.143
15 C -0.364 4.364
16 S 0.544 5.456
17 C -0.202 4.202
18 C -0.052 4.052
19 C -0.077 4.077
20 C -0.175 4.175
21 C 0.083 3.917
22 F -0.120 7.120
23 C -0.161 4.161
24 C -0.081 4.081
25 N -0.173 5.173
26 H 0.075 0.925
27 H 0.025 0.975
28 H 0.025 0.975
29 H 0.071 0.929
30 H 0.071 0.929
31 H 0.248 0.752
32 H 0.218 0.782
33 H 0.154 0.846
34 H 0.168 0.832
35 H 0.189 0.811
36 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -7.067 -28.475 0.071 29.339
hybrid contribution 0.151 2.297 -0.006 2.302
sum -6.916 -26.179 0.064 27.077
Atomic orbital electron populations
1.70077 1.07622 1.27980 1.50952 1.25910 0.95814 1.03216 0.94348
0.85355 0.78967 0.78562 0.77907 1.18834 1.20180 1.20191 1.21476
0.93646 0.91691 1.51589 0.92042 1.19130 0.94194 0.91851 0.96244
1.21356 0.95106 0.81609 1.00347 1.46043 1.11409 1.05452 1.72137
1.17622 0.86324 0.83320 0.76245 1.90751 1.14060 1.87823 1.53085
1.19863 0.88738 0.94548 1.11114 1.26894 1.08443 0.96219 1.04810
1.83188 0.92522 1.06711 1.63152 1.26087 0.98731 0.90731 1.04610
1.17945 0.86668 0.94833 1.05798 1.21200 0.91541 1.00010 0.94958
1.21282 0.96742 0.96007 1.03482 1.18100 0.77786 0.94272 1.01551
1.91514 1.32368 1.94483 1.93672 1.21295 0.91819 1.00367 1.02576
1.21214 0.96103 0.94463 0.96315 1.66854 1.09718 1.25463 1.15291
0.92516 0.97517 0.97516 0.92891 0.92885 0.75194 0.78199 0.84643
0.83153 0.81094 0.81876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16
2 C 0.01 0.33 5.46 84.65 0.46 0.80 16
3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16
4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16
5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16
7 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16
8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16
9 C 0.02 1.22 5.09 29.85 0.15 1.38 16
10 C 0.14 6.31 5.61 86.38 0.48 6.79 16
11 N -0.70 -27.75 5.55 -466.47 -2.59 -30.34 16
12 C 0.58 21.95 7.79 86.63 0.68 22.63 16
13 O -0.58 -24.70 16.65 -4.10 -0.07 -24.77 16
14 C -0.01 -0.20 6.64 40.71 0.27 0.07 16
15 C -0.22 -4.90 10.56 67.11 0.71 -4.19 16
16 S 0.28 3.91 22.12 -56.49 -1.25 2.66 16
17 C 0.07 1.50 7.32 87.55 0.64 2.14 16
18 C -0.05 -0.83 5.87 -20.09 -0.12 -0.95 16
19 C -0.06 -1.05 9.67 22.51 0.22 -0.83 16
20 C -0.16 -2.55 10.01 22.28 0.22 -2.33 16
21 C 0.10 1.54 7.30 22.44 0.16 1.70 16
22 F -0.14 -2.36 17.26 44.97 0.78 -1.58 16
23 C -0.14 -1.47 10.01 22.28 0.22 -1.25 16
24 C -0.06 -0.65 9.60 22.51 0.22 -0.43 16
25 N -0.46 -12.58 9.61 -179.55 -1.73 -14.30 16
26 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16
27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
28 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16
29 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16
30 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16
31 H 0.41 15.36 7.95 -92.71 -0.74 14.62 16
32 H 0.20 3.99 7.99 -2.91 -0.02 3.97 16
33 H 0.14 2.89 7.81 -2.91 -0.02 2.87 16
34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16
35 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16
36 H 0.16 0.74 7.29 -2.91 -0.02 0.72 16
Total: -1.00 -70.88 341.17 2.41 -68.48
By element:
Atomic # 1 Polarization: 13.61 SS G_CDS: 0.40 Total: 14.01 kcal
Atomic # 6 Polarization: -9.88 SS G_CDS: 4.55 Total: -5.33 kcal
Atomic # 7 Polarization: -95.62 SS G_CDS: -4.03 Total: -99.65 kcal
Atomic # 8 Polarization: -24.70 SS G_CDS: -0.07 Total: -24.77 kcal
Atomic # 9 Polarization: -2.36 SS G_CDS: 0.78 Total: -1.58 kcal
Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal
Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal
Total: -70.88 2.41 -68.48 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000342621826.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.442 kcal
(2) G-P(sol) polarization free energy of solvation -70.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds