Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21623 * 120.00244 * 359.72094 * 12 11 10 14 14 C 1.47308 * 119.99758 * 179.72404 * 12 11 10 15 15 C 1.35174 * 122.42890 * 179.97438 * 14 12 11 16 16 S 1.71014 * 109.11650 * 179.97438 * 15 14 12 17 17 C 1.75999 * 90.57549 * 359.97438 * 16 15 14 18 18 C 1.47872 * 125.31805 * 180.02562 * 17 16 15 19 19 C 1.39533 * 120.15744 * 179.69600 * 18 17 16 20 20 C 1.37941 * 119.88259 * 179.76759 * 19 18 17 21 21 C 1.38390 * 120.19689 * 0.50817 * 20 19 18 22 22 C 1.38260 * 120.31117 * 359.74685 * 21 20 19 23 23 C 1.38247 * 120.11842 * 359.97438 * 22 21 20 24 24 F 1.35093 * 120.10406 * 179.97438 * 23 22 21 25 25 N 1.29859 * 109.36565 * 359.75618 * 17 16 15 26 26 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 28 28 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 31 31 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 32 32 H 1.08001 * 125.44241 * 359.95098 * 15 14 12 33 33 H 1.07998 * 120.05361 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.89546 * 180.25519 * 20 19 18 35 35 H 1.07997 * 119.84390 * 179.76500 * 21 20 19 36 36 H 1.08003 * 119.94050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4032 -6.0979 0.0059 14 6 1.4505 -7.3737 0.0110 15 6 2.0762 -8.5719 0.0162 16 16 0.9032 -9.8162 0.0223 17 6 -0.3895 -8.6219 0.0182 18 6 -1.8362 -8.9280 0.0211 19 6 -2.7718 -7.8928 0.0237 20 6 -4.1199 -8.1848 0.0216 21 6 -4.5470 -9.5011 0.0274 22 6 -3.6270 -10.5332 0.0301 23 6 -2.2728 -10.2554 0.0265 24 9 -1.3741 -11.2641 0.0297 25 7 0.1255 -7.4298 0.0180 26 1 -0.4850 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8904 29 1 2.8722 -3.6042 0.8906 30 1 2.8722 -3.6042 -0.8894 31 1 0.5430 -4.9308 0.0000 32 1 3.1461 -8.7197 0.0161 33 1 -2.4409 -6.8648 0.0233 34 1 -4.8442 -7.3837 0.0194 35 1 -5.6039 -9.7232 0.0295 36 1 -3.9670 -11.5584 0.0342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342638774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -18.963178 kcal Electronic energy + Delta-G solvation = -22611.996993 eV Core-core repulsion = 18909.143955 eV Total energy + Delta-G solvation = -3702.853038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.45326 -40.45150 -39.28120 -38.18383 -34.90391 -32.88639 -32.75705 -31.00377 -29.86254 -29.53411 -26.23277 -24.91619 -23.59803 -23.01607 -21.27347 -20.80328 -19.49776 -18.86498 -17.91448 -16.72900 -16.55120 -16.44134 -16.27562 -16.20519 -15.34165 -15.15873 -14.70497 -14.50110 -14.27240 -14.25578 -13.79164 -13.66066 -13.23742 -13.02307 -12.66607 -12.30064 -12.22723 -11.94202 -11.55981 -11.20363 -11.01380 -10.65578 -10.36584 -10.29347 -10.16287 -9.97301 -9.62857 -9.52095 -9.26303 -9.24850 -8.62781 -8.47040 -8.31239 -6.07445 -4.10424 -0.11380 0.75988 0.94148 0.96073 1.42484 2.07617 3.21268 3.32414 3.35918 3.37277 3.40371 3.59943 3.71936 3.80658 4.27980 4.43002 4.54845 4.61088 4.81982 4.91136 5.09504 5.19010 5.29372 5.33899 5.53854 5.64047 5.79275 5.86640 6.00594 6.34124 6.34794 6.38077 6.73475 6.88262 7.23084 7.54209 7.63883 7.90379 8.02569 8.28513 8.58064 8.95128 9.54091 11.04119 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.002781 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.510798 B =10064.607637 C =11751.659626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.700 5.700 12 C 0.581 3.419 13 O -0.545 6.545 14 C 0.021 3.979 15 C -0.225 4.225 16 S 0.202 5.798 17 C 0.076 3.924 18 C -0.053 4.053 19 C -0.045 4.045 20 C -0.127 4.127 21 C -0.078 4.078 22 C -0.151 4.151 23 C 0.110 3.890 24 F -0.128 7.128 25 N -0.425 5.425 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.406 0.594 32 H 0.192 0.808 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 -24.971 0.065 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.349 5.349 12 C 0.363 3.637 13 O -0.423 6.423 14 C -0.116 4.116 15 C -0.367 4.367 16 S 0.460 5.540 17 C -0.200 4.200 18 C -0.057 4.057 19 C -0.066 4.066 20 C -0.145 4.145 21 C -0.097 4.097 22 C -0.170 4.170 23 C 0.088 3.912 24 F -0.107 7.107 25 N -0.140 5.140 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.209 0.791 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.452 -25.461 0.074 27.159 hybrid contribution 0.698 1.563 -0.004 1.712 sum -8.754 -23.898 0.070 25.451 Atomic orbital electron populations 1.69947 1.06075 1.26962 1.50259 1.24991 0.94893 0.99368 0.94986 0.86570 0.79517 0.82663 0.78771 1.20119 1.21239 1.20113 1.21009 0.93208 0.90365 1.51515 0.92276 1.19321 0.94175 0.90936 0.97996 1.21823 0.96170 0.81229 1.00991 1.46192 1.11234 1.05896 1.71553 1.17159 0.86477 0.82456 0.77628 1.90784 1.12703 1.87153 1.51708 1.20342 0.87973 0.95632 1.07619 1.26797 1.07349 0.96387 1.06210 1.84151 0.95367 1.09304 1.65135 1.25516 0.97073 0.90837 1.06527 1.17791 0.88619 0.92185 1.07123 1.21332 0.91730 0.99516 0.94002 1.21299 0.95661 0.97133 1.00392 1.21216 0.99951 0.92085 0.96497 1.21036 0.90356 1.01381 1.04227 1.17703 0.87310 0.83095 1.03076 1.91462 1.66762 1.58766 1.93665 1.66920 1.10219 1.23180 1.13635 0.92791 0.95832 0.95829 0.92277 0.92272 0.75845 0.79124 0.83242 0.84288 0.84472 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 11 N -0.70 -13.58 5.55 -61.42 -0.34 -13.92 16 12 C 0.58 11.06 7.79 -12.57 -0.10 10.97 16 13 O -0.54 -11.74 16.65 5.26 0.09 -11.65 16 14 C 0.02 0.33 6.64 -84.93 -0.56 -0.24 16 15 C -0.23 -2.97 10.56 29.64 0.31 -2.66 16 16 S 0.20 2.17 20.74 -107.50 -2.23 -0.06 16 17 C 0.08 0.95 7.32 -14.44 -0.11 0.85 16 18 C -0.05 -0.56 5.88 -104.91 -0.62 -1.17 16 19 C -0.04 -0.42 9.68 -39.21 -0.38 -0.80 16 20 C -0.13 -0.88 10.03 -39.63 -0.40 -1.27 16 21 C -0.08 -0.45 10.04 -39.52 -0.40 -0.85 16 22 C -0.15 -1.01 10.01 -39.57 -0.40 -1.40 16 23 C 0.11 1.00 7.28 -39.02 -0.28 0.71 16 24 F -0.13 -1.20 14.67 2.25 0.03 -1.17 16 25 N -0.42 -6.26 9.62 -8.11 -0.08 -6.34 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.41 7.32 7.95 -40.82 -0.32 7.00 16 32 H 0.19 2.28 7.99 -52.49 -0.42 1.86 16 33 H 0.15 1.49 7.81 -52.49 -0.41 1.08 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -32.48 338.42 -8.87 -41.35 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.65 Total: 2.16 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.50 Total: -6.44 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.32 Total: -45.80 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.03 Total: -1.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.23 Total: -0.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.48 -8.87 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342638774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.385 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds