Wall clock time and date at job start Tue Mar 31 2020 12:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21623 * 120.00244 * 359.72094 * 12 11 10 14 14 C 1.47308 * 119.99758 * 179.72404 * 12 11 10 15 15 C 1.35174 * 122.42890 * 179.97438 * 14 12 11 16 16 S 1.71014 * 109.11650 * 179.97438 * 15 14 12 17 17 C 1.75999 * 90.57549 * 359.97438 * 16 15 14 18 18 C 1.47872 * 125.31805 * 180.02562 * 17 16 15 19 19 C 1.39533 * 120.15744 * 179.69600 * 18 17 16 20 20 C 1.37941 * 119.88259 * 179.76759 * 19 18 17 21 21 C 1.38390 * 120.19689 * 0.50817 * 20 19 18 22 22 C 1.38260 * 120.31117 * 359.74685 * 21 20 19 23 23 C 1.38247 * 120.11842 * 359.97438 * 22 21 20 24 24 F 1.35093 * 120.10406 * 179.97438 * 23 22 21 25 25 N 1.29859 * 109.36565 * 359.75618 * 17 16 15 26 26 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 28 28 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 29 29 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 30 30 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 31 31 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 32 32 H 1.08001 * 125.44241 * 359.95098 * 15 14 12 33 33 H 1.07998 * 120.05361 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.89546 * 180.25519 * 20 19 18 35 35 H 1.07997 * 119.84390 * 179.76500 * 21 20 19 36 36 H 1.08003 * 119.94050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4032 -6.0979 0.0059 14 6 1.4505 -7.3737 0.0110 15 6 2.0762 -8.5719 0.0162 16 16 0.9032 -9.8162 0.0223 17 6 -0.3895 -8.6219 0.0182 18 6 -1.8362 -8.9280 0.0211 19 6 -2.7718 -7.8928 0.0237 20 6 -4.1199 -8.1848 0.0216 21 6 -4.5470 -9.5011 0.0274 22 6 -3.6270 -10.5332 0.0301 23 6 -2.2728 -10.2554 0.0265 24 9 -1.3741 -11.2641 0.0297 25 7 0.1255 -7.4298 0.0180 26 1 -0.4850 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8904 29 1 2.8722 -3.6042 0.8906 30 1 2.8722 -3.6042 -0.8894 31 1 0.5430 -4.9308 0.0000 32 1 3.1461 -8.7197 0.0161 33 1 -2.4409 -6.8648 0.0233 34 1 -4.8442 -7.3837 0.0194 35 1 -5.6039 -9.7232 0.0295 36 1 -3.9670 -11.5584 0.0342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342638774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:38 Heat of formation + Delta-G solvation = -39.487112 kcal Electronic energy + Delta-G solvation = -22612.886977 eV Core-core repulsion = 18909.143955 eV Total energy + Delta-G solvation = -3703.743022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.13963 -41.64145 -40.17304 -39.33026 -36.70857 -34.85981 -33.61615 -31.70584 -31.57500 -30.57305 -27.67379 -26.29748 -24.82770 -23.71858 -22.85644 -22.17241 -20.64162 -19.99122 -18.67804 -18.45456 -17.74283 -17.41777 -17.22365 -16.99332 -16.69720 -16.54646 -16.47956 -15.64994 -15.54118 -15.13501 -14.80793 -14.65307 -14.43278 -14.37914 -14.29522 -13.40137 -13.26746 -13.02626 -12.94258 -12.72027 -12.56023 -12.28171 -12.16418 -11.76878 -11.54652 -11.23449 -11.21869 -11.06384 -10.61934 -10.53945 -10.13347 -9.87381 -9.34962 -8.24548 -6.35925 -0.98325 0.02408 0.02567 0.19660 0.40723 1.00587 1.41312 1.44215 1.52125 2.14859 2.18341 2.42065 2.62992 2.64519 3.06629 3.09767 3.48558 3.75894 4.00413 4.01830 4.13507 4.29605 4.32480 4.41020 4.43109 4.60742 4.78950 4.82296 5.03823 5.06762 5.17675 5.30209 5.42850 5.43895 5.53308 5.75311 5.82731 6.12746 6.15404 6.52746 6.76414 7.03891 7.33283 8.87403 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.002781 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.510798 B =10064.607637 C =11751.659626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.700 5.700 12 C 0.582 3.418 13 O -0.575 6.575 14 C -0.006 4.006 15 C -0.229 4.229 16 S 0.275 5.725 17 C 0.067 3.933 18 C -0.080 4.080 19 C -0.062 4.062 20 C -0.125 4.125 21 C -0.063 4.063 22 C -0.145 4.145 23 C 0.099 3.901 24 F -0.133 7.133 25 N -0.450 5.450 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.412 0.588 32 H 0.201 0.799 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -26.622 0.074 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.349 5.349 12 C 0.366 3.634 13 O -0.456 6.456 14 C -0.142 4.142 15 C -0.371 4.371 16 S 0.535 5.465 17 C -0.208 4.208 18 C -0.085 4.085 19 C -0.083 4.083 20 C -0.143 4.143 21 C -0.082 4.082 22 C -0.163 4.163 23 C 0.078 3.922 24 F -0.111 7.111 25 N -0.166 5.166 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.248 0.752 32 H 0.218 0.782 33 H 0.151 0.849 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.881 -27.142 0.083 29.242 hybrid contribution 0.974 1.913 -0.006 2.146 sum -9.906 -25.229 0.077 27.104 Atomic orbital electron populations 1.70061 1.07608 1.28139 1.50748 1.25903 0.95824 1.03180 0.94278 0.85463 0.78279 0.77927 0.79163 1.19285 1.20473 1.19278 1.21420 0.93650 0.91717 1.51923 0.92059 1.19118 0.94160 0.91756 0.96273 1.21376 0.95157 0.81545 1.00363 1.46033 1.11410 1.05394 1.72083 1.17552 0.86293 0.83218 0.76300 1.90748 1.13996 1.87782 1.53055 1.19910 0.88722 0.94636 1.10958 1.27051 1.08633 0.96716 1.04749 1.83871 0.92780 1.06679 1.63197 1.25979 0.98683 0.90916 1.05224 1.17918 0.87680 0.93355 1.09515 1.21355 0.93019 0.98706 0.95225 1.21591 0.94745 0.98684 0.99323 1.21669 1.01675 0.91013 0.93834 1.21428 0.89172 1.03139 1.02591 1.17904 0.88310 0.82289 1.03724 1.91438 1.67136 1.58738 1.93792 1.66862 1.09701 1.24756 1.15235 0.92464 0.97476 0.97477 0.92880 0.92868 0.75168 0.78202 0.84888 0.82325 0.80763 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.29 5.09 29.85 0.15 1.44 16 10 C 0.14 6.39 5.61 86.38 0.48 6.88 16 11 N -0.70 -28.49 5.55 -466.47 -2.59 -31.08 16 12 C 0.58 23.07 7.79 86.63 0.68 23.74 16 13 O -0.58 -25.59 16.65 -4.10 -0.07 -25.66 16 14 C -0.01 -0.21 6.64 40.71 0.27 0.06 16 15 C -0.23 -6.01 10.56 67.11 0.71 -5.30 16 16 S 0.27 5.61 20.74 -56.49 -1.17 4.43 16 17 C 0.07 1.69 7.32 87.54 0.64 2.33 16 18 C -0.08 -1.66 5.88 -20.05 -0.12 -1.78 16 19 C -0.06 -1.15 9.68 22.51 0.22 -0.94 16 20 C -0.13 -1.48 10.03 22.24 0.22 -1.26 16 21 C -0.06 -0.49 10.04 22.31 0.22 -0.27 16 22 C -0.14 -1.44 10.01 22.28 0.22 -1.22 16 23 C 0.10 1.62 7.28 22.63 0.16 1.79 16 24 F -0.13 -2.22 14.67 44.97 0.66 -1.57 16 25 N -0.45 -13.75 9.62 -179.57 -1.73 -15.48 16 26 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.41 15.77 7.95 -92.71 -0.74 15.03 16 32 H 0.20 4.72 7.99 -2.91 -0.02 4.69 16 33 H 0.13 2.85 7.81 -2.91 -0.02 2.83 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.17 0.11 8.06 -2.91 -0.02 0.08 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -71.49 338.42 2.37 -69.12 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.40 Total: 13.81 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.56 Total: -4.83 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -4.03 Total: -101.52 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.07 Total: -25.66 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.66 Total: -1.57 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.17 Total: 4.43 kcal Total: -71.49 2.37 -69.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342638774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.631 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds