Wall clock time and date at job start Tue Mar 31 2020 13:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48504 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47080 * 299.99990 * 3 2 1 6 6 H 1.48494 * 109.47260 * 60.00131 * 3 2 1 7 7 C 1.37883 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99844 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.36329 * 125.85903 * 84.98064 * 10 9 7 12 12 C 1.35129 * 108.89707 * 179.97438 * 11 10 9 13 13 C 1.40981 * 108.23732 * 359.97438 * 12 11 10 14 14 N 1.33306 * 126.35200 * 179.97438 * 13 12 11 15 15 C 1.32908 * 120.00352 * 0.02562 * 14 13 12 16 16 O 1.21590 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00076 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.38163 * 120.43001 * 265.00134 * 18 17 15 20 20 N 1.31875 * 120.77813 * 179.97438 * 19 18 17 21 21 C 1.31909 * 121.76059 * 0.02562 * 20 19 18 22 22 C 1.38128 * 120.77718 * 0.02562 * 21 20 19 23 23 C 1.38783 * 120.42370 * 84.72252 * 18 17 15 24 24 Cl 1.73592 * 120.80531 * 0.02562 * 23 18 17 25 25 N 1.37273 * 107.28940 * 0.23052 * 13 12 11 26 26 H 0.96996 * 126.35236 * 179.75573 * 25 13 12 27 27 H 0.96993 * 119.99806 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47302 * 60.00383 * 9 7 2 29 29 H 1.08994 * 109.47611 * 299.99748 * 9 7 2 30 30 H 1.08001 * 125.55370 * 0.02562 * 11 10 9 31 31 H 1.08001 * 125.87998 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47152 * 60.00193 * 17 15 14 33 33 H 1.09001 * 109.46980 * 300.00294 * 17 15 14 34 34 H 1.08008 * 119.61081 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.60851 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.42265 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 2.7963 -4.1564 1.1019 12 6 3.6093 -5.1618 0.7091 13 6 3.5341 -5.2670 -0.6948 14 7 4.1913 -6.1403 -1.4580 15 6 5.0124 -7.0243 -0.9004 16 8 5.1638 -7.0368 0.3060 17 6 5.7548 -8.0119 -1.7633 18 6 6.6112 -8.8951 -0.8928 19 6 7.9411 -8.5881 -0.6782 20 7 8.6966 -9.3559 0.0827 21 6 8.2206 -10.4393 0.6655 22 6 6.9011 -10.8110 0.4966 23 6 6.0726 -10.0241 -0.2918 24 17 4.4054 -10.4467 -0.5269 25 7 2.6631 -4.2996 -1.1304 26 1 2.4115 -4.1247 -2.0507 27 1 -0.4849 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6247 -2.5564 0.8919 30 1 2.6412 -3.8363 2.1217 31 1 4.2121 -5.7789 1.3588 32 1 6.3874 -7.4739 -2.4694 33 1 5.0395 -8.6256 -2.3108 34 1 8.3667 -7.7085 -1.1382 35 1 8.8704 -11.0428 1.2818 36 1 6.5175 -11.6994 0.9761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342643959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:32 Heat of formation + Delta-G solvation = 76.162976 kcal Electronic energy + Delta-G solvation = -22938.274964 eV Core-core repulsion = 19257.423162 eV Total energy + Delta-G solvation = -3680.851803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35321 -41.33739 -39.77265 -37.71438 -35.98581 -34.70486 -34.26406 -32.81833 -32.54741 -32.32630 -29.42131 -28.13703 -25.12556 -24.61444 -23.96070 -22.82268 -22.55181 -20.48611 -18.90599 -18.36686 -18.32730 -17.82718 -17.25915 -16.79933 -16.42431 -16.20453 -15.82742 -15.72887 -15.33234 -14.95980 -14.81958 -14.45893 -14.40625 -14.22954 -14.15908 -13.67362 -13.38558 -13.15875 -13.06002 -12.77016 -12.67506 -12.34286 -12.03135 -11.91516 -11.21464 -10.92242 -10.78434 -10.59485 -10.52002 -10.39570 -10.04320 -9.83064 -8.61544 -8.28476 -6.57540 0.02080 0.05876 0.17824 0.58178 0.97017 1.36687 1.42272 1.50996 1.54408 2.29780 2.63285 2.81286 2.87933 2.94232 3.42662 3.60844 3.73080 3.78146 3.88875 3.96139 4.33379 4.35191 4.46241 4.48280 4.69840 4.73331 4.82581 4.84115 4.90317 5.03612 5.10476 5.24910 5.50271 5.57779 5.68634 5.96769 6.10120 6.41726 6.61795 6.87134 6.90331 7.16517 7.88483 8.65115 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.002494 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.704061 B =11226.193088 C =11729.473741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.266 3.734 10 N -0.344 5.344 11 C 0.177 3.823 12 C -0.343 4.343 13 C 0.456 3.544 14 N -0.712 5.712 15 C 0.491 3.509 16 O -0.604 6.604 17 C -0.071 4.071 18 C -0.114 4.114 19 C 0.113 3.887 20 N -0.500 5.500 21 C 0.104 3.896 22 C -0.163 4.163 23 C 0.004 3.996 24 Cl -0.056 7.056 25 N -0.461 5.461 26 H 0.453 0.547 27 H 0.274 0.726 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.224 0.776 31 H 0.174 0.826 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.172 0.828 35 H 0.197 0.803 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 -16.267 -0.269 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.078 0.922 9 C 0.149 3.851 10 N -0.129 5.129 11 C 0.031 3.969 12 C -0.375 4.375 13 C 0.206 3.794 14 N -0.477 5.477 15 C 0.277 3.723 16 O -0.488 6.488 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.044 4.044 20 N -0.209 5.209 21 C -0.052 4.052 22 C -0.183 4.183 23 C -0.031 4.031 24 Cl -0.027 7.027 25 N -0.184 5.184 26 H 0.302 0.698 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.240 0.760 31 H 0.191 0.809 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.190 0.810 35 H 0.214 0.786 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.958 -15.751 -0.523 18.128 hybrid contribution -1.056 0.902 -0.098 1.392 sum 7.902 -14.850 -0.621 16.833 Atomic orbital electron populations 1.69962 1.07123 1.28981 1.48988 1.25595 0.95625 1.02372 0.93625 0.85402 0.78666 0.78949 0.78074 1.19696 1.20436 1.19913 1.21620 0.93754 0.90843 1.54103 0.92203 1.19789 0.85453 0.79354 1.00517 1.47932 1.39243 1.28591 0.97109 1.23426 0.89532 0.90762 0.93154 1.22384 1.12440 1.07694 0.95000 1.19428 0.84361 0.85025 0.90537 1.68763 1.25032 1.16327 1.37593 1.20978 0.80859 0.83485 0.86943 1.90536 1.66497 1.73428 1.18346 1.20195 0.98424 0.95574 0.96963 1.20524 0.96152 0.95119 0.99922 1.22872 0.89139 0.98159 0.94215 1.67708 1.39164 1.05815 1.08219 1.23337 0.93134 0.92859 0.95885 1.22378 0.94758 1.01874 0.99309 1.21438 0.86568 0.96309 0.98771 1.98383 1.16216 1.92551 1.95560 1.44576 1.41282 1.28617 1.03895 0.69840 0.91676 0.93713 0.90962 0.75995 0.80866 0.86140 0.87564 0.81045 0.78582 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.14 13.29 21.45 0.28 -44.85 16 2 C 0.03 1.43 5.46 84.66 0.46 1.89 16 3 Si 0.96 38.31 29.54 68.60 2.03 40.34 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.57 -25.89 9.39 25.60 0.24 -25.65 16 8 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.27 10.59 6.19 85.63 0.53 11.12 16 10 N -0.34 -12.08 3.63 -350.80 -1.27 -13.35 16 11 C 0.18 5.58 11.46 83.28 0.95 6.53 16 12 C -0.34 -12.31 9.51 22.23 0.21 -12.09 16 13 C 0.46 17.01 8.07 133.83 1.08 18.09 16 14 N -0.71 -26.81 10.51 -309.88 -3.26 -30.07 16 15 C 0.49 17.79 7.70 87.95 0.68 18.47 16 16 O -0.60 -24.61 12.94 -4.00 -0.05 -24.67 16 17 C -0.07 -1.98 5.48 29.10 0.16 -1.82 16 18 C -0.11 -3.04 4.39 -19.75 -0.09 -3.12 16 19 C 0.11 2.84 10.84 84.67 0.92 3.76 16 20 N -0.50 -12.24 10.36 -195.90 -2.03 -14.27 16 21 C 0.10 2.00 11.18 84.66 0.95 2.95 16 22 C -0.16 -3.22 9.94 22.38 0.22 -2.99 16 23 C 0.00 0.10 6.37 22.54 0.14 0.24 16 24 Cl -0.06 -1.42 27.61 -2.72 -0.08 -1.49 16 25 N -0.46 -15.76 7.37 -54.82 -0.40 -16.16 16 26 H 0.45 13.63 8.96 -213.29 -1.91 11.72 16 27 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.22 5.22 8.06 -2.91 -0.02 5.19 16 31 H 0.17 6.66 5.77 -2.91 -0.02 6.64 16 32 H 0.12 2.80 8.06 -2.39 -0.02 2.78 16 33 H 0.11 2.78 7.24 -2.39 -0.02 2.76 16 34 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -61.62 337.22 0.91 -60.72 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.77 Total: 26.44 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.46 Total: 17.38 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -6.68 Total: -118.71 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -61.62 0.91 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342643959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.878 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds