Wall clock time and date at job start Tue Mar 31 2020 12:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00343 * 2 1 4 4 H 1.48497 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47227 * 299.99978 * 3 2 1 6 6 H 1.48503 * 109.47165 * 59.99835 * 3 2 1 7 7 C 1.37886 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46792 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47322 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00021 * 179.97438 * 11 10 9 13 13 O 1.21701 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.46560 * 119.99570 * 180.02562 * 12 11 10 15 15 C 1.36881 * 126.11367 * 180.02562 * 14 12 11 16 16 N 1.30637 * 114.03625 * 180.02562 * 15 14 12 17 17 C 1.30366 * 117.29450 * 359.97438 * 16 15 14 18 18 C 1.47720 * 124.75092 * 180.02562 * 17 16 15 19 19 C 1.39622 * 120.16002 * 180.02562 * 18 17 16 20 20 C 1.37911 * 119.87545 * 179.97438 * 19 18 17 21 21 C 1.38421 * 120.20700 * 0.02562 * 20 19 18 22 22 C 1.38265 * 120.32864 * 359.97438 * 21 20 19 23 23 C 1.38252 * 120.12140 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.10595 * 180.02562 * 23 22 21 25 25 S 1.70918 * 110.49659 * 0.27183 * 17 16 15 26 26 H 0.97007 * 120.00132 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47630 * 59.99979 * 9 7 2 28 28 H 1.09001 * 109.47012 * 299.99526 * 9 7 2 29 29 H 1.09005 * 109.47586 * 59.99918 * 10 9 7 30 30 H 1.09001 * 109.47127 * 299.99667 * 10 9 7 31 31 H 0.97004 * 119.99489 * 0.02562 * 11 10 9 32 32 H 1.07999 * 122.98286 * 0.02562 * 15 14 12 33 33 H 1.07999 * 120.06561 * 359.95763 * 19 18 17 34 34 H 1.07996 * 119.89501 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.83330 * 180.27194 * 21 20 19 36 36 H 1.07997 * 119.93855 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0007 13 8 3.4034 -6.0981 0.0003 14 6 1.4535 -7.3673 0.0008 15 6 2.0076 -8.6189 0.0009 16 7 1.1321 -9.5884 0.0004 17 6 -0.1284 -9.2557 0.0004 18 6 -1.2523 -10.2143 0.0004 19 6 -2.5694 -9.7510 -0.0002 20 6 -3.6143 -10.6512 -0.0007 21 6 -3.3611 -12.0120 -0.0001 22 6 -2.0601 -12.4802 0.0004 23 6 -1.0024 -11.5899 0.0009 24 9 0.2686 -12.0476 0.0010 25 16 -0.2984 -7.5550 -0.0065 26 1 -0.4851 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 0.5425 -4.9308 0.0011 32 1 3.0740 -8.7897 0.0014 33 1 -2.7697 -8.6898 0.0001 34 1 -4.6332 -10.2932 -0.0016 35 1 -4.1838 -12.7116 -0.0050 36 1 -1.8698 -13.5432 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342656307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:42 Heat of formation + Delta-G solvation = -38.697317 kcal Electronic energy + Delta-G solvation = -22312.704323 eV Core-core repulsion = 18608.995549 eV Total energy + Delta-G solvation = -3703.708774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.85813 -41.31429 -40.43962 -39.58022 -36.70910 -34.90065 -33.67195 -32.02408 -31.60425 -30.37857 -27.49240 -26.48532 -24.13876 -23.77820 -23.19017 -22.48276 -20.80397 -19.91523 -18.58257 -18.41739 -17.99445 -17.35639 -16.90909 -16.86021 -16.60876 -16.49770 -16.44796 -15.66394 -15.60134 -15.36556 -14.90491 -14.78568 -14.66894 -14.32399 -14.13778 -13.37270 -13.26268 -12.97690 -12.86063 -12.80042 -12.53090 -12.30877 -12.23700 -11.75788 -11.54629 -11.29950 -11.08937 -10.89434 -10.63927 -10.60926 -10.19964 -9.90344 -9.36693 -8.25163 -6.35299 -1.30394 -0.09815 0.14133 0.16786 0.32375 1.35695 1.41065 1.42406 1.55150 1.98890 1.99833 2.42087 2.60318 2.72104 3.09965 3.19759 3.56251 3.67256 3.77127 4.01917 4.06465 4.25904 4.30012 4.43741 4.44085 4.70597 4.80197 4.84522 4.98182 5.08633 5.09892 5.24937 5.36687 5.42700 5.54196 5.75840 5.81112 6.12860 6.30028 6.42052 6.77190 6.95745 7.33997 8.86998 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.025326 B = 0.002376 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.298300 B =11781.496919 C =12866.344639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.710 5.710 12 C 0.592 3.408 13 O -0.569 6.569 14 C -0.323 4.323 15 C 0.128 3.872 16 N -0.491 5.491 17 C 0.077 3.923 18 C -0.099 4.099 19 C -0.072 4.072 20 C -0.120 4.120 21 C -0.057 4.057 22 C -0.160 4.160 23 C 0.119 3.881 24 F -0.136 7.136 25 S 0.264 5.736 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.406 0.594 32 H 0.194 0.806 33 H 0.149 0.851 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 -25.797 -0.017 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.360 5.360 12 C 0.378 3.622 13 O -0.450 6.450 14 C -0.448 4.448 15 C -0.033 4.033 16 N -0.205 5.205 17 C -0.192 4.192 18 C -0.104 4.104 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.076 4.076 22 C -0.179 4.179 23 C 0.096 3.904 24 F -0.114 7.114 25 S 0.525 5.475 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.211 0.789 33 H 0.166 0.834 34 H 0.190 0.810 35 H 0.194 0.806 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.872 -25.463 -0.026 28.532 hybrid contribution 1.642 0.815 0.007 1.833 sum -11.230 -24.649 -0.020 27.086 Atomic orbital electron populations 1.70054 1.07484 1.27985 1.50952 1.25856 0.95812 1.03049 0.94404 0.85395 0.78959 0.78795 0.77891 1.19025 1.20223 1.20233 1.21467 0.93640 0.91743 1.51553 0.92177 1.19158 0.94219 0.91606 0.96602 1.21390 0.95184 0.81199 1.00616 1.46063 1.10685 1.05662 1.73618 1.16948 0.86471 0.82544 0.76213 1.90794 1.14163 1.87582 1.52481 1.26043 0.98375 0.98494 1.21863 1.22551 1.01489 0.84655 0.94566 1.66549 1.00191 1.35780 1.18010 1.25633 0.94363 0.97371 1.01826 1.18205 0.91545 0.90015 1.10595 1.21414 0.89368 1.01927 0.96577 1.21581 1.00405 0.92759 0.99072 1.21724 0.96165 0.96594 0.93113 1.21506 0.91860 1.00838 1.03650 1.18156 0.79875 0.91454 1.00901 1.91541 1.37572 1.89086 1.93193 1.83372 1.00180 1.00785 1.63141 0.92484 0.97088 0.97075 0.92740 0.92734 0.75865 0.78943 0.83373 0.80997 0.80627 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.46 13.29 21.45 0.28 -53.18 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.14 5.98 5.61 86.38 0.48 6.47 16 11 N -0.71 -25.73 5.55 -467.18 -2.59 -28.32 16 12 C 0.59 21.57 7.78 86.41 0.67 22.24 16 13 O -0.57 -24.50 16.87 -4.35 -0.07 -24.58 16 14 C -0.32 -9.66 6.52 24.12 0.16 -9.50 16 15 C 0.13 3.76 11.15 84.55 0.94 4.70 16 16 N -0.49 -14.19 9.02 -191.97 -1.73 -15.92 16 17 C 0.08 1.89 7.13 87.42 0.62 2.51 16 18 C -0.10 -1.93 5.88 -20.06 -0.12 -2.05 16 19 C -0.07 -0.89 9.56 22.53 0.22 -0.68 16 20 C -0.12 -0.79 10.03 22.24 0.22 -0.57 16 21 C -0.06 -0.33 10.04 22.32 0.22 -0.11 16 22 C -0.16 -1.81 10.01 22.28 0.22 -1.58 16 23 C 0.12 2.32 7.29 22.65 0.17 2.49 16 24 F -0.14 -3.44 15.70 44.97 0.71 -2.74 16 25 S 0.26 5.85 21.12 -56.49 -1.19 4.65 16 26 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.41 12.77 7.65 -92.71 -0.71 12.06 16 32 H 0.19 5.33 8.06 -2.91 -0.02 5.30 16 33 H 0.15 1.38 7.22 -2.91 -0.02 1.36 16 34 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -72.47 338.79 2.51 -69.95 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.43 Total: 8.73 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.66 Total: -3.87 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.04 Total: -97.42 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.58 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.71 Total: -2.74 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.19 Total: 4.65 kcal Total: -72.47 2.51 -69.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342656307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.257 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds