Wall clock time and date at job start Tue Mar 31 2020 13:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35093 * 125.54405 * 2 1 4 4 C 1.41055 * 108.24102 * 180.02562 * 3 2 1 5 5 N 1.33106 * 126.37271 * 180.02562 * 4 3 2 6 6 C 1.33612 * 120.00015 * 359.97391 * 5 4 3 7 7 O 1.21836 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.48367 * 120.00312 * 180.02562 * 6 5 4 9 9 C 1.39222 * 119.71394 * 179.73071 * 8 6 5 10 10 C 1.38712 * 119.04541 * 179.73266 * 9 8 6 11 11 Cl 1.73605 * 120.76846 * 180.28129 * 10 9 8 12 12 C 1.38799 * 118.46146 * 0.52658 * 10 9 8 13 13 C 1.38435 * 119.33081 * 359.73389 * 12 10 9 14 14 N 1.31602 * 120.91217 * 359.97438 * 13 12 10 15 15 N 1.37382 * 107.26311 * 0.02562 * 4 3 2 16 16 H 0.96994 * 126.35478 * 180.02562 * 15 4 3 17 17 N 1.36365 * 125.53525 * 180.02562 * 2 1 3 18 18 C 1.46501 * 125.85601 * 359.71278 * 17 2 1 19 19 C 1.50700 * 109.46824 * 84.99992 * 18 17 2 20 20 H 1.07997 * 120.00531 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00031 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47130 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47409 * 120.00068 * 23 21 19 26 26 H 1.48503 * 109.47439 * 240.00116 * 23 21 19 27 27 H 1.09004 * 109.46769 * 269.97674 * 1 2 3 28 28 H 1.08997 * 109.46466 * 29.96769 * 1 2 3 29 29 H 1.08997 * 109.47613 * 149.97360 * 1 2 3 30 30 H 1.08007 * 125.87908 * 0.04614 * 3 2 1 31 31 H 1.08003 * 120.47476 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.33216 * 179.75069 * 12 10 9 33 33 H 1.07993 * 119.54574 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.46895 * 205.00106 * 18 17 2 35 35 H 1.08993 * 109.47142 * 325.00253 * 18 17 2 36 36 H 0.97000 * 120.00092 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0992 0.0000 4 6 3.6391 0.6797 -0.0006 5 7 4.7115 1.4681 -0.0003 6 6 4.5643 2.7961 0.0001 7 8 3.4485 3.2853 0.0007 8 6 5.7596 3.6750 -0.0001 9 6 5.5993 5.0580 -0.0054 10 6 6.7263 5.8666 0.0001 11 17 6.5783 7.5964 0.0013 12 6 7.9751 5.2608 -0.0005 13 6 8.0585 3.8790 -0.0010 14 7 6.9722 3.1362 -0.0003 15 7 3.6381 -0.6942 -0.0015 16 1 4.4189 -1.2697 -0.0018 17 7 2.2996 -1.1097 -0.0005 18 6 1.8321 -2.4981 0.0048 19 6 1.5487 -2.9381 -1.4084 20 1 1.7011 -2.2520 -2.2284 21 6 1.0948 -4.2165 -1.6544 22 7 0.9087 -5.0519 -0.6558 23 14 0.7442 -4.7622 -3.4062 24 1 1.0311 -3.6437 -4.3399 25 1 1.6054 -5.9236 -3.7447 26 1 -0.6835 -5.1530 -3.5266 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.9483 2.1230 0.0007 31 1 4.6116 5.4949 -0.0097 32 1 8.8727 5.8615 -0.0004 33 1 9.0283 3.4040 -0.0011 34 1 2.6006 -3.1385 0.4376 35 1 0.9208 -2.5723 0.5981 36 1 0.5898 -5.9514 -0.8290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348906200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:59 Heat of formation + Delta-G solvation = 93.833201 kcal Electronic energy + Delta-G solvation = -22886.261557 eV Core-core repulsion = 19206.175992 eV Total energy + Delta-G solvation = -3680.085564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02987 -40.27323 -38.20901 -36.87812 -34.44915 -33.22539 -32.45490 -32.17907 -31.48281 -30.62814 -27.60069 -26.96989 -24.88895 -23.56707 -23.12102 -21.71220 -19.90754 -19.57568 -17.44452 -17.06503 -16.98259 -16.49572 -15.77618 -15.21885 -15.10525 -15.07933 -14.58222 -14.43804 -14.04323 -13.88710 -13.46949 -13.00575 -12.86557 -12.80760 -12.52195 -12.41640 -12.19986 -12.07625 -11.86960 -11.36771 -11.25669 -11.11526 -10.56258 -10.39963 -9.82055 -9.59017 -9.50832 -9.39740 -9.27146 -8.96741 -8.93378 -8.44674 -7.03950 -6.54753 -4.70196 0.58438 0.98764 1.64294 1.72223 1.97644 2.83919 3.01835 3.11860 3.16682 3.59149 3.91740 4.04144 4.33656 4.52251 4.57504 4.70096 4.77149 4.90567 4.95450 5.10031 5.49404 5.52065 5.56303 5.70437 5.76280 5.80136 6.05574 6.12946 6.29012 6.43562 6.51573 6.55859 6.69307 7.32899 7.39321 7.46361 7.55834 7.85844 7.86830 8.16210 8.39314 9.00748 9.23119 10.48323 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002375 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.577455 B =11785.634725 C =12166.823790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.192 3.808 3 C -0.332 4.332 4 C 0.467 3.533 5 N -0.666 5.666 6 C 0.541 3.459 7 O -0.575 6.575 8 C 0.140 3.860 9 C -0.121 4.121 10 C -0.004 4.004 11 Cl -0.057 7.057 12 C -0.159 4.159 13 C 0.103 3.897 14 N -0.423 5.423 15 N -0.461 5.461 16 H 0.447 0.553 17 N -0.334 5.334 18 C 0.252 3.748 19 C -0.557 4.557 20 H 0.070 0.930 21 C 0.071 3.929 22 N -0.885 5.885 23 Si 0.909 3.091 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.278 1.278 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 14.387 2.580 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 C -0.364 4.364 4 C 0.218 3.782 5 N -0.429 5.429 6 C 0.325 3.675 7 O -0.457 6.457 8 C 0.001 3.999 9 C -0.143 4.143 10 C -0.038 4.038 11 Cl -0.028 7.028 12 C -0.180 4.180 13 C -0.056 4.056 14 N -0.134 5.134 15 N -0.183 5.183 16 H 0.295 0.705 17 N -0.120 5.120 18 C 0.136 3.864 19 C -0.595 4.595 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.735 3.265 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.204 1.204 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.201 0.799 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.289 12.985 2.637 15.123 hybrid contribution -0.208 0.601 -0.919 1.118 sum 7.081 13.586 1.718 15.417 Atomic orbital electron populations 1.20673 0.86226 1.05173 1.03743 1.21389 0.94613 0.85507 0.92084 1.22292 0.91178 1.00367 1.22540 1.19156 0.91518 0.82330 0.85161 1.68868 1.27394 1.04381 1.42252 1.18354 0.85406 0.86177 0.77587 1.90638 1.25421 1.79169 1.50438 1.21164 0.92417 0.90219 0.96136 1.22101 0.99656 0.93508 0.99014 1.21176 0.94909 0.85524 1.02229 1.98386 1.98293 1.09415 1.96707 1.22264 0.96880 0.96874 1.01996 1.22987 0.97978 0.89425 0.95236 1.67854 0.97800 1.39989 1.07778 1.44562 0.98958 1.05239 1.69507 0.70516 1.48022 0.92745 1.08382 1.62849 1.20101 0.96586 0.70031 0.99711 1.21404 1.47695 0.98792 0.91609 0.91146 1.24950 0.94224 0.95776 0.98483 1.69904 1.43961 1.06987 1.31337 0.86248 0.78323 0.78917 0.82995 1.19348 1.20477 1.20354 0.89714 0.89214 0.88905 0.79906 0.82742 0.83767 0.81580 0.92951 0.91294 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.92 36.01 0.36 -0.99 16 2 C 0.19 3.32 6.93 -81.69 -0.57 2.76 16 3 C -0.33 -6.24 9.41 -39.63 -0.37 -6.61 16 4 C 0.47 9.21 8.07 -155.24 -1.25 7.96 16 5 N -0.67 -13.67 10.28 -12.13 -0.12 -13.79 16 6 C 0.54 10.87 7.72 -12.61 -0.10 10.77 16 7 O -0.58 -12.06 13.25 5.07 0.07 -11.99 16 8 C 0.14 2.39 6.75 -82.96 -0.56 1.83 16 9 C -0.12 -1.74 9.45 -39.04 -0.37 -2.11 16 10 C 0.00 -0.04 6.37 -39.20 -0.25 -0.29 16 11 Cl -0.06 -0.58 29.02 -51.86 -1.50 -2.09 16 12 C -0.16 -1.61 9.93 -39.30 -0.39 -2.00 16 13 C 0.10 1.19 11.18 -17.58 -0.20 0.99 16 14 N -0.42 -6.76 10.06 -9.78 -0.10 -6.86 16 15 N -0.46 -8.38 7.38 31.32 0.23 -8.15 16 16 H 0.45 7.17 8.96 -182.56 -1.64 5.53 16 17 N -0.33 -6.25 3.63 -58.03 -0.21 -6.46 16 18 C 0.25 5.18 5.71 -5.19 -0.03 5.15 16 19 C -0.56 -12.95 9.39 -34.44 -0.32 -13.28 16 20 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -22.04 13.29 55.43 0.74 -21.30 16 23 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 30 H 0.18 3.52 5.77 -52.48 -0.30 3.22 16 31 H 0.15 2.18 7.64 -52.48 -0.40 1.78 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 36 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -28.90 338.80 -9.78 -38.68 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.81 Total: 7.16 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -4.15 Total: 5.77 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.53 Total: -56.56 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.90 -9.78 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348906200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.515 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds