Wall clock time and date at job start Tue Mar 31 2020 13:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35093 * 125.54405 * 2 1 4 4 C 1.41055 * 108.24102 * 180.02562 * 3 2 1 5 5 N 1.33106 * 126.37271 * 180.02562 * 4 3 2 6 6 C 1.33612 * 120.00015 * 359.97391 * 5 4 3 7 7 O 1.21836 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.48367 * 120.00312 * 180.02562 * 6 5 4 9 9 C 1.39222 * 119.71394 * 179.73071 * 8 6 5 10 10 C 1.38712 * 119.04541 * 179.73266 * 9 8 6 11 11 Cl 1.73605 * 120.76846 * 180.28129 * 10 9 8 12 12 C 1.38799 * 118.46146 * 0.52658 * 10 9 8 13 13 C 1.38435 * 119.33081 * 359.73389 * 12 10 9 14 14 N 1.31602 * 120.91217 * 359.97438 * 13 12 10 15 15 N 1.37382 * 107.26311 * 0.02562 * 4 3 2 16 16 H 0.96994 * 126.35478 * 180.02562 * 15 4 3 17 17 N 1.36365 * 125.53525 * 180.02562 * 2 1 3 18 18 C 1.46501 * 125.85601 * 359.71278 * 17 2 1 19 19 C 1.50700 * 109.46824 * 84.99992 * 18 17 2 20 20 H 1.07997 * 120.00531 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00031 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47130 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47409 * 120.00068 * 23 21 19 26 26 H 1.48503 * 109.47439 * 240.00116 * 23 21 19 27 27 H 1.09004 * 109.46769 * 269.97674 * 1 2 3 28 28 H 1.08997 * 109.46466 * 29.96769 * 1 2 3 29 29 H 1.08997 * 109.47613 * 149.97360 * 1 2 3 30 30 H 1.08007 * 125.87908 * 0.04614 * 3 2 1 31 31 H 1.08003 * 120.47476 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.33216 * 179.75069 * 12 10 9 33 33 H 1.07993 * 119.54574 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.46895 * 205.00106 * 18 17 2 35 35 H 1.08993 * 109.47142 * 325.00253 * 18 17 2 36 36 H 0.97000 * 120.00092 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0992 0.0000 4 6 3.6391 0.6797 -0.0006 5 7 4.7115 1.4681 -0.0003 6 6 4.5643 2.7961 0.0001 7 8 3.4485 3.2853 0.0007 8 6 5.7596 3.6750 -0.0001 9 6 5.5993 5.0580 -0.0054 10 6 6.7263 5.8666 0.0001 11 17 6.5783 7.5964 0.0013 12 6 7.9751 5.2608 -0.0005 13 6 8.0585 3.8790 -0.0010 14 7 6.9722 3.1362 -0.0003 15 7 3.6381 -0.6942 -0.0015 16 1 4.4189 -1.2697 -0.0018 17 7 2.2996 -1.1097 -0.0005 18 6 1.8321 -2.4981 0.0048 19 6 1.5487 -2.9381 -1.4084 20 1 1.7011 -2.2520 -2.2284 21 6 1.0948 -4.2165 -1.6544 22 7 0.9087 -5.0519 -0.6558 23 14 0.7442 -4.7622 -3.4062 24 1 1.0311 -3.6437 -4.3399 25 1 1.6054 -5.9236 -3.7447 26 1 -0.6835 -5.1530 -3.5266 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.9483 2.1230 0.0007 31 1 4.6116 5.4949 -0.0097 32 1 8.8727 5.8615 -0.0004 33 1 9.0283 3.4040 -0.0011 34 1 2.6006 -3.1385 0.4376 35 1 0.9208 -2.5723 0.5981 36 1 0.5898 -5.9514 -0.8290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348906200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:58 Heat of formation + Delta-G solvation = 76.016970 kcal Electronic energy + Delta-G solvation = -22887.034127 eV Core-core repulsion = 19206.175992 eV Total energy + Delta-G solvation = -3680.858134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49793 -41.36782 -39.61672 -37.76879 -36.07555 -34.85569 -33.78484 -33.31531 -32.61122 -32.14420 -28.86247 -28.61522 -26.20105 -24.74364 -24.53350 -23.08906 -21.28866 -20.94991 -18.99710 -18.62221 -18.17083 -17.80198 -16.88089 -16.66947 -16.58589 -16.53129 -15.91879 -15.73855 -15.40199 -14.78822 -14.75806 -14.42270 -14.33222 -14.25464 -13.75361 -13.70069 -13.35128 -13.25140 -13.16921 -12.94459 -12.76237 -12.33424 -12.13760 -12.04778 -11.16965 -11.13567 -10.78802 -10.56617 -10.55440 -10.36796 -10.29178 -9.96642 -8.64374 -8.30821 -6.57271 -0.54768 0.01262 0.26314 0.48956 0.82680 1.36606 1.41709 1.44753 1.52049 2.29635 2.44011 2.58575 2.93153 3.09064 3.15973 3.52943 3.64553 3.77310 3.93111 4.05783 4.21154 4.25359 4.51483 4.61138 4.74330 4.77031 4.79816 4.83379 4.91317 4.95171 5.09444 5.29374 5.46899 5.50083 5.68104 5.91283 6.06714 6.35778 6.54723 6.66326 6.88331 7.16462 7.73993 8.65554 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002375 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.577455 B =11785.634725 C =12166.823790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.201 3.799 3 C -0.344 4.344 4 C 0.451 3.549 5 N -0.682 5.682 6 C 0.528 3.472 7 O -0.598 6.598 8 C 0.107 3.893 9 C -0.125 4.125 10 C -0.007 4.007 11 Cl -0.039 7.039 12 C -0.132 4.132 13 C 0.104 3.896 14 N -0.456 5.456 15 N -0.459 5.459 16 H 0.453 0.547 17 N -0.341 5.341 18 C 0.265 3.735 19 C -0.562 4.562 20 H 0.057 0.943 21 C 0.033 3.967 22 N -0.911 5.911 23 Si 0.963 3.037 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.271 1.271 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.147 0.853 32 H 0.187 0.813 33 H 0.205 0.795 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 15.550 2.314 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 C -0.376 4.376 4 C 0.203 3.797 5 N -0.445 5.445 6 C 0.313 3.687 7 O -0.481 6.481 8 C -0.031 4.031 9 C -0.147 4.147 10 C -0.042 4.042 11 Cl -0.010 7.010 12 C -0.153 4.153 13 C -0.056 4.056 14 N -0.167 5.167 15 N -0.182 5.182 16 H 0.302 0.698 17 N -0.126 5.126 18 C 0.148 3.852 19 C -0.600 4.600 20 H 0.076 0.924 21 C -0.170 4.170 22 N -0.549 5.549 23 Si 0.788 3.212 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.197 1.197 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.195 0.805 31 H 0.165 0.835 32 H 0.205 0.795 33 H 0.222 0.778 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.339 14.156 2.373 16.600 hybrid contribution -0.421 0.364 -0.817 0.988 sum 7.918 14.520 1.556 16.612 Atomic orbital electron populations 1.20858 0.83325 1.05786 1.05580 1.21965 0.96187 0.84398 0.90104 1.22238 0.91146 1.00532 1.23641 1.19398 0.92070 0.82783 0.85472 1.68935 1.27838 1.04913 1.42812 1.18943 0.86507 0.86363 0.76874 1.90592 1.26526 1.79459 1.51488 1.20777 0.92047 0.90623 0.99659 1.22016 1.00435 0.92842 0.99425 1.21277 0.94806 0.86347 1.01757 1.98396 1.98306 1.07680 1.96574 1.22716 0.97546 0.96643 0.98380 1.23657 0.98033 0.90177 0.93723 1.67749 0.98359 1.41656 1.08957 1.44547 0.99118 1.04941 1.69550 0.69762 1.47929 0.93130 1.08230 1.63354 1.19798 0.96367 0.70655 0.98342 1.21530 1.47351 0.98680 0.92444 0.92437 1.25563 0.94174 0.95906 1.01309 1.69962 1.44843 1.07339 1.32724 0.85420 0.78326 0.78115 0.79347 1.19829 1.20496 1.19653 0.87122 0.86985 0.89744 0.80455 0.83481 0.79546 0.77828 0.93836 0.90913 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.92 71.24 0.71 -1.79 16 2 C 0.20 6.92 6.93 41.13 0.28 7.21 16 3 C -0.34 -13.20 9.41 22.24 0.21 -12.99 16 4 C 0.45 18.35 8.07 133.87 1.08 19.44 16 5 N -0.68 -29.04 10.28 -311.11 -3.20 -32.24 16 6 C 0.53 22.10 7.72 87.12 0.67 22.78 16 7 O -0.60 -26.20 13.25 -4.78 -0.06 -26.26 16 8 C 0.11 3.72 6.75 41.95 0.28 4.01 16 9 C -0.13 -3.61 9.45 22.62 0.21 -3.40 16 10 C -0.01 -0.15 6.37 22.52 0.14 -0.01 16 11 Cl -0.04 -0.70 29.02 -2.72 -0.08 -0.78 16 12 C -0.13 -2.23 9.93 22.45 0.22 -2.01 16 13 C 0.10 2.13 11.18 84.77 0.95 3.07 16 14 N -0.46 -14.37 10.06 -184.86 -1.86 -16.23 16 15 N -0.46 -17.06 7.38 -54.81 -0.40 -17.47 16 16 H 0.45 14.99 8.96 -213.29 -1.91 13.08 16 17 N -0.34 -12.80 3.63 -337.51 -1.23 -14.02 16 18 C 0.27 10.92 5.71 85.63 0.49 11.40 16 19 C -0.56 -26.10 9.39 25.60 0.24 -25.86 16 20 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.03 1.57 5.46 84.66 0.46 2.03 16 22 N -0.91 -45.06 13.29 21.45 0.28 -44.77 16 23 Si 0.96 38.47 29.54 68.60 2.03 40.50 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 27 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.35 7.81 -2.39 -0.02 2.33 16 30 H 0.18 7.04 5.77 -2.91 -0.02 7.02 16 31 H 0.15 4.31 7.64 -2.91 -0.02 4.29 16 32 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.97 7.89 -2.39 -0.02 2.95 16 36 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 Total: -1.00 -63.60 338.80 0.67 -62.93 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.77 Total: 24.47 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 5.96 Total: 23.88 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.40 Total: -124.74 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -63.60 0.67 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348906200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.946 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds