Wall clock time and date at job start Tue Mar 31 2020 12:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00006 * 2 1 4 4 C 1.50699 * 109.46792 * 269.99702 * 3 2 1 5 5 H 1.08001 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99778 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00055 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00079 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46719 * 60.00151 * 8 6 4 10 10 H 1.48495 * 109.47201 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47227 * 300.00655 * 8 6 4 12 12 C 1.34779 * 119.99925 * 179.97438 * 2 1 3 13 13 O 1.21489 * 119.99592 * 183.80565 * 12 2 1 14 14 C 1.48344 * 119.99750 * 3.80455 * 12 2 1 15 15 C 1.41910 * 126.84013 * 172.83434 * 14 12 2 16 16 C 1.36736 * 103.81632 * 180.08946 * 15 14 12 17 17 C 1.47820 * 126.82115 * 179.90995 * 16 15 14 18 18 C 1.39587 * 120.14624 * 309.43129 * 17 16 15 19 19 C 1.37931 * 119.86176 * 180.25526 * 18 17 16 20 20 C 1.38388 * 120.17666 * 0.03764 * 19 18 17 21 21 C 1.38298 * 120.30868 * 359.96071 * 20 19 18 22 22 C 1.38117 * 120.12717 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 120.08720 * 179.97438 * 22 21 20 24 24 O 1.34462 * 106.35998 * 359.64136 * 16 15 14 25 25 N 1.20879 * 111.73776 * 0.24499 * 24 16 15 26 26 H 1.09002 * 109.47635 * 264.00970 * 1 2 3 27 27 H 1.08998 * 109.47176 * 24.01100 * 1 2 3 28 28 H 1.09005 * 109.47533 * 144.01020 * 1 2 3 29 29 H 1.09001 * 109.46991 * 29.99528 * 3 2 1 30 30 H 1.08996 * 109.46947 * 149.99587 * 3 2 1 31 31 H 0.97000 * 119.99963 * 179.97438 * 7 6 4 32 32 H 1.08006 * 128.09152 * 359.97115 * 15 14 12 33 33 H 1.07994 * 120.06700 * 0.25207 * 18 17 16 34 34 H 1.08009 * 119.91190 * 180.02562 * 19 18 17 35 35 H 1.08005 * 119.84545 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.93695 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.1407 3.5934 -4.1347 10 1 4.1804 4.7028 -3.4340 11 1 4.2414 2.3819 -4.1333 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1683 0.0704 14 6 1.3995 -2.4505 -0.0841 15 6 1.9584 -3.7460 -0.2364 16 6 0.8682 -4.5710 -0.2615 17 6 0.8737 -6.0422 -0.4050 18 6 1.5950 -6.6431 -1.4380 19 6 1.5918 -8.0161 -1.5696 20 6 0.8751 -8.7984 -0.6811 21 6 0.1579 -8.2106 0.3450 22 6 0.1526 -6.8370 0.4887 23 17 -0.7485 -6.1002 1.7767 24 8 -0.2095 -3.7788 -0.1236 25 7 0.1002 -2.6144 -0.0273 26 1 -0.3634 -0.1072 1.0220 27 1 -0.3633 0.9387 -0.4182 28 1 -0.3634 -0.8315 -0.6039 29 1 1.6084 2.0284 0.5138 30 1 3.1498 1.1384 0.5139 31 1 4.0301 4.4439 -0.8505 32 1 3.0009 -4.0168 -0.3161 33 1 2.1544 -6.0342 -2.1327 34 1 2.1500 -8.4820 -2.3684 35 1 0.8759 -9.8730 -0.7894 36 1 -0.3989 -8.8269 1.0352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354186970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:16 Heat of formation + Delta-G solvation = 60.016190 kcal Electronic energy + Delta-G solvation = -23348.927888 eV Core-core repulsion = 19635.083157 eV Total energy + Delta-G solvation = -3713.844731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.91740 -39.66393 -38.89581 -36.78296 -34.99090 -34.02810 -33.39359 -32.47105 -31.25934 -29.84953 -27.93751 -26.10815 -24.53659 -24.04893 -23.14394 -22.47090 -21.65390 -19.23574 -17.79136 -17.70886 -16.98419 -16.54414 -16.49194 -15.79499 -15.42481 -15.20987 -14.42491 -14.39676 -14.27283 -14.06432 -14.02888 -13.42494 -12.82517 -12.47391 -12.36646 -12.23730 -12.07749 -11.96576 -11.88366 -11.31733 -11.21543 -11.08952 -10.86251 -10.57563 -10.28079 -10.21268 -10.07416 -9.68073 -9.37391 -9.31117 -8.90281 -8.46194 -7.74086 -6.07351 -4.12918 0.34769 0.72896 1.36744 1.73698 1.83192 2.77529 3.19570 3.31170 3.35108 3.37549 3.57563 3.76895 4.16384 4.28125 4.36036 4.44095 4.57512 4.74194 4.85901 4.95782 5.08447 5.20057 5.26128 5.34724 5.41456 5.68537 5.76642 5.85074 5.90545 5.93302 6.04951 6.23580 6.38708 6.97992 7.35741 7.44199 7.87716 8.07027 8.17282 8.27432 8.76995 8.94561 9.52007 11.00792 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.002876 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.314116 B = 9732.190764 C =10393.085346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.581 5.581 3 C 0.244 3.756 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.581 3.419 13 O -0.525 6.525 14 C -0.008 4.008 15 C -0.153 4.153 16 C -0.013 4.013 17 C -0.008 4.008 18 C -0.076 4.076 19 C -0.114 4.114 20 C -0.095 4.095 21 C -0.111 4.111 22 C -0.014 4.014 23 Cl -0.051 7.051 24 O 0.128 5.872 25 N -0.324 5.324 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.182 0.818 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -26.193 0.935 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.312 5.312 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.364 3.636 13 O -0.401 6.401 14 C -0.166 4.166 15 C -0.175 4.175 16 C -0.076 4.076 17 C -0.011 4.011 18 C -0.095 4.095 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.041 4.041 23 Cl -0.022 7.022 24 O 0.053 5.947 25 N -0.025 5.025 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.842 -24.961 1.296 26.513 hybrid contribution 0.730 0.154 -0.900 1.168 sum -8.112 -24.807 0.397 26.103 Atomic orbital electron populations 1.21948 0.80344 1.03316 1.01047 1.48099 1.06990 1.07199 1.68877 1.19435 0.92718 0.77416 0.97869 1.21375 1.36994 1.06578 0.92037 0.92406 1.24933 0.95199 0.96235 0.97615 1.69922 1.38091 1.14335 1.30865 0.86520 0.78414 0.77847 0.84438 1.20177 1.21078 1.20110 1.16891 0.86350 0.81321 0.79027 1.90765 1.12460 1.86081 1.50810 1.23840 0.89641 0.97519 1.05619 1.22642 1.00885 0.89667 1.04273 1.22117 0.86630 0.92211 1.06683 1.17459 1.00414 0.86370 0.96809 1.21281 0.97295 0.95258 0.95654 1.21212 0.99262 0.93087 0.99651 1.21301 0.95652 1.00617 0.93812 1.21036 1.00435 0.92081 0.99435 1.21117 0.97322 0.93252 0.92426 1.98417 1.72915 1.82757 1.48071 1.84968 1.32774 1.11853 1.65140 1.74336 1.15987 0.95879 1.16301 0.93438 0.90561 0.90655 0.94421 0.93395 0.92537 0.80044 0.84067 0.84509 0.84596 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 9.64 59.85 0.58 2.03 16 2 N -0.58 -13.42 2.86 -183.89 -0.53 -13.94 16 3 C 0.24 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.53 -15.34 9.39 -34.44 -0.32 -15.67 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.58 13.24 7.70 -12.10 -0.09 13.15 16 13 O -0.53 -13.63 16.51 5.38 0.09 -13.54 16 14 C -0.01 -0.15 6.85 -82.62 -0.57 -0.71 16 15 C -0.15 -2.28 10.90 -38.72 -0.42 -2.70 16 16 C -0.01 -0.17 6.14 -36.21 -0.22 -0.39 16 17 C -0.01 -0.09 5.82 -104.94 -0.61 -0.70 16 18 C -0.08 -0.61 9.73 -39.19 -0.38 -0.99 16 19 C -0.11 -0.67 10.03 -39.64 -0.40 -1.06 16 20 C -0.10 -0.52 10.04 -39.50 -0.40 -0.91 16 21 C -0.11 -0.76 9.82 -39.60 -0.39 -1.15 16 22 C -0.01 -0.13 6.35 -39.10 -0.25 -0.38 16 23 Cl -0.05 -0.54 27.50 -51.86 -1.43 -1.96 16 24 O 0.13 1.88 10.51 16.05 0.17 2.05 16 25 N -0.32 -5.44 8.70 33.35 0.29 -5.15 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 28 H 0.08 1.34 5.40 -51.93 -0.28 1.06 16 29 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.05 1.43 7.37 -51.93 -0.38 1.05 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.18 2.39 8.06 -52.48 -0.42 1.97 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 35 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -33.58 336.65 -7.79 -41.37 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.58 Total: -3.66 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.60 Total: -1.23 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.50 Total: -45.06 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.26 Total: -11.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.58 -7.79 -41.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354186970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.389 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds