Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38292 * 119.92517 * 2 1 4 4 C 1.38098 * 120.07501 * 179.72123 * 3 2 1 5 5 C 1.38927 * 119.92553 * 0.26544 * 4 3 2 6 6 N 1.39737 * 120.07674 * 179.97438 * 5 4 3 7 7 C 1.38688 * 120.00226 * 36.50204 * 6 5 4 8 8 N 1.29700 * 124.95059 * 186.38077 * 7 6 5 9 9 C 1.32074 * 116.87317 * 179.97438 * 8 7 6 10 10 C 1.50703 * 122.70936 * 180.02562 * 9 8 7 11 11 S 1.81406 * 109.47116 * 89.97451 * 10 9 8 12 12 C 1.81390 * 102.99992 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47298 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00426 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99494 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00208 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46940 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47016 * 119.99862 * 17 15 13 20 20 H 1.48496 * 109.46995 * 240.00419 * 17 15 13 21 21 C 1.33365 * 114.58109 * 0.02562 * 9 8 7 22 22 S 1.70963 * 124.94716 * 6.08703 * 7 6 5 23 23 C 1.38928 * 119.84596 * 359.97438 * 5 4 3 24 24 C 1.38090 * 119.92544 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.46860 * 89.99455 * 1 2 3 26 26 H 1.08994 * 109.47011 * 209.99246 * 1 2 3 27 27 H 1.09002 * 109.46808 * 329.99452 * 1 2 3 28 28 H 1.07996 * 119.96306 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.03752 * 180.23261 * 4 3 2 30 30 H 0.96997 * 120.00276 * 216.51111 * 6 5 4 31 31 H 1.08998 * 109.47074 * 209.97539 * 10 9 8 32 32 H 1.09001 * 109.46877 * 329.97969 * 10 9 8 33 33 H 1.08999 * 109.47164 * 299.99973 * 12 11 10 34 34 H 1.08998 * 109.47567 * 60.00322 * 12 11 10 35 35 H 0.97008 * 119.99240 * 179.97438 * 16 15 13 36 36 H 1.08004 * 125.94869 * 179.97438 * 21 9 8 37 37 H 1.08004 * 120.03609 * 179.97438 * 23 5 4 38 38 H 1.08004 * 119.96516 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2022 0.0058 5 6 4.2741 -0.0001 0.0061 6 7 5.6715 -0.0001 0.0114 7 6 6.3622 0.9639 0.7304 8 7 7.6488 1.1268 0.7092 9 6 8.1401 2.0978 1.4577 10 6 9.6140 2.4030 1.5313 11 16 10.0453 3.6146 0.2519 12 6 11.8274 3.8488 0.4959 13 6 12.3453 4.8456 -0.5086 14 1 11.6699 5.2932 -1.2228 15 6 13.6813 5.1864 -0.5160 16 7 14.5036 4.6418 0.3539 17 14 14.3234 6.4215 -1.7617 18 1 13.2046 6.8843 -2.6218 19 1 14.9121 7.5834 -1.0485 20 1 15.3635 5.7792 -2.6048 21 6 7.2264 2.7864 2.1430 22 16 5.6412 2.1153 1.7684 23 6 3.5778 -1.2023 0.0011 24 6 2.1970 -1.1986 -0.0047 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1328 0.0004 29 1 4.1160 2.1385 0.0096 30 1 6.1584 -0.6742 -0.4878 31 1 9.8518 2.8115 2.5135 32 1 10.1831 1.4872 1.3711 33 1 12.0103 4.2209 1.5040 34 1 12.3409 2.8968 0.3614 35 1 15.4437 4.8813 0.3484 36 1 7.4237 3.6139 2.8084 37 1 4.1160 -2.1387 0.0008 38 1 1.6550 -2.1328 -0.0083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 64.933995 kcal Electronic energy + Delta-G solvation = -20092.673631 eV Core-core repulsion = 16959.671824 eV Total energy + Delta-G solvation = -3133.001807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29545 -39.49902 -36.39476 -33.12110 -32.37430 -31.38067 -30.60297 -28.52654 -27.44965 -26.53658 -24.26158 -23.17274 -22.74228 -21.52451 -20.04940 -18.48785 -17.17482 -16.65967 -16.45187 -15.86383 -15.67165 -15.29916 -14.89482 -14.35343 -14.26313 -14.16943 -13.97019 -13.80170 -13.17581 -12.99261 -12.92257 -12.56263 -12.47941 -12.36423 -11.95242 -11.91562 -11.54266 -11.25488 -10.94892 -10.87048 -10.62537 -10.03359 -9.66429 -9.53411 -9.35224 -9.27217 -8.90087 -8.70358 -8.59758 -7.63225 -6.62950 -6.17284 -4.21012 0.63067 0.95458 1.10366 1.24136 1.81040 2.36060 2.69135 3.26703 3.30652 3.33913 3.39665 3.44877 3.89607 4.37691 4.41451 4.51459 4.56550 4.63431 4.90400 5.00353 5.18774 5.19914 5.24995 5.31956 5.33464 5.48119 5.58951 5.63092 5.80260 5.83760 5.91513 5.96351 6.20428 6.24704 6.36308 6.75025 7.04747 7.12448 7.14657 7.77691 7.92261 8.03857 8.81000 9.41701 10.94074 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.031892 B = 0.002152 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.740735 B =13010.322881 C =13177.130044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.083 4.083 4 C -0.157 4.157 5 C 0.162 3.838 6 N -0.636 5.636 7 C 0.293 3.707 8 N -0.516 5.516 9 C 0.136 3.864 10 C -0.022 4.022 11 S -0.286 6.286 12 C 0.087 3.913 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.282 4.282 22 S 0.118 5.882 23 C -0.143 4.143 24 C -0.090 4.090 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.421 0.579 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.179 0.821 37 H 0.128 0.872 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.611 -11.312 3.127 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.101 4.101 4 C -0.179 4.179 5 C 0.065 3.935 6 N -0.268 5.268 7 C -0.077 4.077 8 N -0.239 5.239 9 C 0.005 3.995 10 C -0.172 4.172 11 S -0.058 6.058 12 C -0.059 4.059 13 C -0.549 4.549 14 H 0.086 0.914 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.424 4.424 22 S 0.366 5.634 23 C -0.164 4.164 24 C -0.108 4.108 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.196 0.804 37 H 0.146 0.854 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -28.792 -10.923 2.462 30.893 hybrid contribution 2.601 -0.099 0.074 2.604 sum -26.192 -11.022 2.536 28.529 Atomic orbital electron populations 1.20758 0.90974 1.02808 1.02314 1.19925 0.96301 0.93033 1.01883 1.20865 0.92965 0.97937 0.98371 1.21151 0.94956 0.97266 1.04529 1.17689 0.81294 0.94384 1.00134 1.41119 1.02861 1.31059 1.51718 1.23354 0.91260 0.95852 0.97231 1.66097 1.08798 1.23419 1.25580 1.19120 0.96213 0.90941 0.93236 1.21720 0.90991 1.02498 1.02033 1.86842 1.18594 1.53945 1.46464 1.21093 0.83802 1.00442 1.00604 1.20711 0.93681 1.24092 1.16429 0.91438 1.24970 0.96290 0.96549 0.96134 1.69970 1.04448 1.43122 1.35580 0.86294 0.78894 0.80596 0.80867 1.19422 1.20739 1.20743 1.26569 0.93722 1.09637 1.12501 1.83956 1.09563 1.28429 1.41409 1.20879 0.94450 0.96426 1.04670 1.20857 0.93116 0.97822 0.99023 0.91236 0.91592 0.91492 0.85354 0.84883 0.73929 0.89079 0.89130 0.94512 0.94523 0.92585 0.80390 0.85376 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.11 -0.78 5.88 -104.58 -0.62 -1.40 16 3 C -0.08 -0.66 9.69 -39.61 -0.38 -1.04 16 4 C -0.16 -1.53 8.18 -39.38 -0.32 -1.85 16 5 C 0.16 1.61 6.20 -83.74 -0.52 1.09 16 6 N -0.64 -7.21 5.48 -11.63 -0.06 -7.27 16 7 C 0.29 4.12 7.95 -87.59 -0.70 3.42 16 8 N -0.52 -8.76 10.59 -11.34 -0.12 -8.88 16 9 C 0.14 2.31 6.00 -84.19 -0.50 1.80 16 10 C -0.02 -0.41 6.36 36.01 0.23 -0.18 16 11 S -0.29 -6.55 21.64 -107.50 -2.33 -8.87 16 12 C 0.09 2.33 5.70 36.01 0.21 2.53 16 13 C -0.51 -14.68 9.13 -34.44 -0.31 -14.99 16 14 H 0.07 1.96 7.71 -52.48 -0.40 1.55 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 17 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 C -0.28 -4.08 11.10 29.03 0.32 -3.75 16 22 S 0.12 1.44 19.40 -107.50 -2.09 -0.65 16 23 C -0.14 -1.15 9.97 -39.38 -0.39 -1.54 16 24 C -0.09 -0.63 9.69 -39.61 -0.38 -1.01 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 27 H 0.07 0.27 8.08 -51.93 -0.42 -0.14 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.13 1.39 5.93 -48.78 -0.29 1.10 16 30 H 0.42 4.23 8.95 -40.82 -0.37 3.86 16 31 H 0.09 1.52 8.12 -51.92 -0.42 1.10 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.18 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -32.19 352.57 -11.52 -43.70 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.84 Total: 0.86 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.11 Total: -15.36 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.55 Total: -41.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -4.41 Total: -9.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.19 -11.52 -43.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.638 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds