Wall clock time and date at job start Tue Mar 31 2020 12:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47086 * 239.99754 * 3 2 1 5 5 H 1.48499 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47634 * 120.00047 * 3 2 1 7 7 C 1.37885 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99784 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21683 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.46686 * 119.99474 * 180.02562 * 11 10 9 14 14 C 1.35663 * 126.12528 * 180.02562 * 13 11 10 15 15 N 1.30938 * 114.18820 * 180.02562 * 14 13 11 16 16 C 1.29426 * 117.36712 * 359.97438 * 15 14 13 17 17 C 1.50703 * 124.80678 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47064 * 90.02165 * 17 16 15 19 19 C 1.38212 * 120.01417 * 264.72711 * 18 17 16 20 20 C 1.38223 * 120.02788 * 179.72002 * 19 18 17 21 21 C 1.38272 * 120.04558 * 0.55603 * 20 19 18 22 22 C 1.38164 * 120.02897 * 359.72169 * 21 20 19 23 23 C 1.38438 * 120.01126 * 85.00070 * 18 17 16 24 24 F 1.35104 * 120.02651 * 359.97438 * 23 18 17 25 25 S 1.70960 * 110.39014 * 0.26481 * 16 15 14 26 26 H 0.97000 * 120.00279 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47419 * 59.99607 * 9 7 2 28 28 H 1.09003 * 109.47064 * 299.99444 * 9 7 2 29 29 H 0.96997 * 120.00105 * 0.02562 * 10 9 7 30 30 H 1.07999 * 122.90354 * 0.02712 * 14 13 11 31 31 H 1.09002 * 109.47152 * 330.02258 * 17 16 15 32 32 H 1.09001 * 109.46980 * 210.02358 * 17 16 15 33 33 H 1.08006 * 119.98822 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.98031 * 180.29292 * 20 19 18 35 35 H 1.08003 * 119.98567 * 179.74609 * 21 20 19 36 36 H 1.08001 * 120.01872 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5574 -5.1058 0.0020 13 6 2.7070 -5.9983 0.0016 14 6 2.3940 -7.3183 0.0017 15 7 3.4323 -8.1160 0.0028 16 6 4.6044 -7.5669 0.0031 17 6 5.9083 -8.3225 0.0038 18 6 6.3437 -8.5742 -1.4168 19 6 6.0357 -9.7727 -2.0323 20 6 6.4299 -10.0016 -3.3372 21 6 7.1428 -9.0364 -4.0244 22 6 7.4568 -7.8398 -3.4093 23 6 7.0574 -7.6071 -2.1039 24 9 7.3634 -6.4371 -1.5016 25 16 4.4639 -5.8631 0.0094 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1567 -3.4355 0.0009 30 1 1.3763 -7.6799 0.0009 31 1 5.7761 -9.2748 0.5174 32 1 6.6685 -7.7347 0.5182 33 1 5.4824 -10.5289 -1.4951 34 1 6.1847 -10.9365 -3.8190 35 1 7.4539 -9.2179 -5.0426 36 1 8.0140 -7.0863 -3.9461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427656649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:01 Heat of formation + Delta-G solvation = -20.277494 kcal Electronic energy + Delta-G solvation = -22765.812142 eV Core-core repulsion = 19062.902111 eV Total energy + Delta-G solvation = -3702.910031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.17973 -40.06892 -39.32262 -38.45186 -34.32994 -34.08771 -32.42209 -30.95485 -30.43993 -28.35218 -27.02404 -24.65830 -23.16208 -23.01113 -21.97984 -20.90682 -19.43397 -18.41046 -17.82460 -17.11984 -16.58255 -16.30332 -16.00193 -15.72324 -15.27994 -15.03134 -14.74600 -14.54814 -14.16496 -14.11848 -13.86463 -13.54714 -13.33929 -13.10140 -12.59969 -12.50830 -12.04306 -11.95747 -11.85466 -11.51616 -11.40263 -11.02546 -10.90356 -10.36353 -9.93614 -9.47394 -9.44794 -9.38539 -9.34515 -9.05736 -8.87703 -8.78745 -8.00866 -6.20107 -4.27695 0.28354 0.76216 0.85091 1.20428 1.63586 2.57237 3.19040 3.24218 3.28875 3.30418 3.66453 3.84096 3.90785 4.03929 4.24990 4.33572 4.37833 4.58956 4.77403 4.89820 4.96596 5.15914 5.16128 5.26756 5.31022 5.49121 5.52480 5.68175 5.76659 5.94619 6.03489 6.12585 6.51441 7.19656 7.24783 7.43721 7.55603 7.61599 7.90440 8.45496 8.66844 8.90053 9.38477 10.90036 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002999 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.620400 B = 9334.452419 C =10309.580742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.701 5.701 11 C 0.575 3.425 12 O -0.538 6.538 13 C -0.269 4.269 14 C 0.101 3.899 15 N -0.470 5.470 16 C 0.041 3.959 17 C -0.002 4.002 18 C -0.119 4.119 19 C -0.073 4.073 20 C -0.131 4.131 21 C -0.090 4.090 22 C -0.154 4.154 23 C 0.106 3.894 24 F -0.133 7.133 25 S 0.181 5.819 26 H 0.267 0.733 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.389 0.611 30 H 0.188 0.812 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.674 -20.017 -4.469 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.358 3.642 12 O -0.418 6.418 13 C -0.394 4.394 14 C -0.056 4.056 15 N -0.184 5.184 16 C -0.234 4.234 17 C -0.042 4.042 18 C -0.122 4.122 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.172 4.172 23 C 0.086 3.914 24 F -0.111 7.111 25 S 0.437 5.563 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.222 0.778 30 H 0.205 0.795 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.357 -19.669 -4.416 26.601 hybrid contribution -0.022 0.956 0.019 0.956 sum 17.335 -18.714 -4.397 25.885 Atomic orbital electron populations 1.69957 1.06118 1.27557 1.48529 1.24940 0.94932 0.99466 0.94530 0.86449 0.79424 0.82138 0.78787 1.19982 1.21003 1.19973 1.21158 0.93278 0.90306 1.53768 0.91862 1.19216 0.88131 0.81545 0.98162 1.46467 1.11218 1.05767 1.71445 1.16813 0.86912 0.82077 0.78402 1.90803 1.14997 1.84417 1.51560 1.26250 0.96677 0.99934 1.16512 1.22103 0.99102 0.87037 0.97312 1.66135 0.97389 1.38608 1.16236 1.27031 0.97475 0.95164 1.03726 1.19103 0.90030 1.01480 0.93612 1.19670 1.00997 0.95013 0.96471 1.21011 0.97410 0.95835 0.94859 1.21240 0.99040 0.99984 0.94642 1.21073 0.97059 0.92586 1.00057 1.21178 1.03110 0.99418 0.93536 1.17613 0.99405 0.82301 0.92041 1.91526 1.91099 1.45203 1.83295 1.84113 1.00845 1.06307 1.65000 0.92284 0.95049 0.95020 0.77798 0.79509 0.87073 0.88188 0.84574 0.85140 0.84940 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.29 55.43 0.74 -25.23 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 10 N -0.70 -15.48 5.54 -62.80 -0.35 -15.83 16 11 C 0.58 12.27 7.79 -12.85 -0.10 12.17 16 12 O -0.54 -13.25 16.87 5.20 0.09 -13.16 16 13 C -0.27 -4.60 6.48 -37.09 -0.24 -4.84 16 14 C 0.10 1.58 11.09 -18.85 -0.21 1.37 16 15 N -0.47 -6.63 10.51 -11.50 -0.12 -6.75 16 16 C 0.04 0.51 6.62 -13.29 -0.09 0.42 16 17 C 0.00 -0.02 5.70 -29.03 -0.17 -0.18 16 18 C -0.12 -1.11 5.12 -104.56 -0.54 -1.64 16 19 C -0.07 -0.58 9.68 -39.60 -0.38 -0.97 16 20 C -0.13 -0.91 10.05 -39.57 -0.40 -1.30 16 21 C -0.09 -0.62 10.04 -39.60 -0.40 -1.02 16 22 C -0.15 -1.28 10.03 -39.52 -0.40 -1.68 16 23 C 0.11 1.05 7.24 -39.42 -0.29 0.76 16 24 F -0.13 -1.45 16.57 2.25 0.04 -1.42 16 25 S 0.18 2.48 22.31 -107.50 -2.40 0.08 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.39 7.59 7.50 -40.82 -0.31 7.29 16 30 H 0.19 2.75 8.06 -52.49 -0.42 2.33 16 31 H 0.11 0.81 8.05 -51.93 -0.42 0.39 16 32 H 0.10 0.78 7.79 -51.93 -0.40 0.37 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -32.69 341.77 -9.14 -41.83 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.62 Total: 3.29 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -3.64 Total: -3.77 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.27 Total: -47.80 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.69 -9.14 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427656649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.551 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds