Wall clock time and date at job start Tue Mar 31 2020 12:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47086 * 239.99754 * 3 2 1 5 5 H 1.48499 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47634 * 120.00047 * 3 2 1 7 7 C 1.37885 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99784 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21683 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.46686 * 119.99474 * 180.02562 * 11 10 9 14 14 C 1.35663 * 126.12528 * 180.02562 * 13 11 10 15 15 N 1.30938 * 114.18820 * 180.02562 * 14 13 11 16 16 C 1.29426 * 117.36712 * 359.97438 * 15 14 13 17 17 C 1.50703 * 124.80678 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47064 * 90.02165 * 17 16 15 19 19 C 1.38212 * 120.01417 * 264.72711 * 18 17 16 20 20 C 1.38223 * 120.02788 * 179.72002 * 19 18 17 21 21 C 1.38272 * 120.04558 * 0.55603 * 20 19 18 22 22 C 1.38164 * 120.02897 * 359.72169 * 21 20 19 23 23 C 1.38438 * 120.01126 * 85.00070 * 18 17 16 24 24 F 1.35104 * 120.02651 * 359.97438 * 23 18 17 25 25 S 1.70960 * 110.39014 * 0.26481 * 16 15 14 26 26 H 0.97000 * 120.00279 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47419 * 59.99607 * 9 7 2 28 28 H 1.09003 * 109.47064 * 299.99444 * 9 7 2 29 29 H 0.96997 * 120.00105 * 0.02562 * 10 9 7 30 30 H 1.07999 * 122.90354 * 0.02712 * 14 13 11 31 31 H 1.09002 * 109.47152 * 330.02258 * 17 16 15 32 32 H 1.09001 * 109.46980 * 210.02358 * 17 16 15 33 33 H 1.08006 * 119.98822 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.98031 * 180.29292 * 20 19 18 35 35 H 1.08003 * 119.98567 * 179.74609 * 21 20 19 36 36 H 1.08001 * 120.01872 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5574 -5.1058 0.0020 13 6 2.7070 -5.9983 0.0016 14 6 2.3940 -7.3183 0.0017 15 7 3.4323 -8.1160 0.0028 16 6 4.6044 -7.5669 0.0031 17 6 5.9083 -8.3225 0.0038 18 6 6.3437 -8.5742 -1.4168 19 6 6.0357 -9.7727 -2.0323 20 6 6.4299 -10.0016 -3.3372 21 6 7.1428 -9.0364 -4.0244 22 6 7.4568 -7.8398 -3.4093 23 6 7.0574 -7.6071 -2.1039 24 9 7.3634 -6.4371 -1.5016 25 16 4.4639 -5.8631 0.0094 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1567 -3.4355 0.0009 30 1 1.3763 -7.6799 0.0009 31 1 5.7761 -9.2748 0.5174 32 1 6.6685 -7.7347 0.5182 33 1 5.4824 -10.5289 -1.4951 34 1 6.1847 -10.9365 -3.8190 35 1 7.4539 -9.2179 -5.0426 36 1 8.0140 -7.0863 -3.9461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427656649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:00 Heat of formation + Delta-G solvation = -41.195849 kcal Electronic energy + Delta-G solvation = -22766.719230 eV Core-core repulsion = 19062.902111 eV Total energy + Delta-G solvation = -3703.817119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91549 -41.29896 -40.32660 -39.75035 -36.29599 -34.89472 -34.45185 -31.75262 -31.40624 -29.72308 -28.56104 -25.85132 -24.80960 -23.75053 -22.79713 -22.46361 -20.92155 -19.66042 -18.68716 -18.49511 -17.69901 -17.30671 -17.03307 -16.99139 -16.65292 -16.46491 -16.37715 -15.56040 -15.48756 -15.04464 -14.91157 -14.78273 -14.24890 -14.24129 -14.09952 -13.91002 -13.31294 -13.13930 -13.03163 -12.70969 -12.66865 -12.49865 -12.27369 -12.00344 -11.57317 -11.34416 -10.87784 -10.85266 -10.66849 -10.15697 -9.98535 -9.89882 -9.63936 -8.32525 -6.50032 -0.91431 -0.01453 0.18042 0.26700 0.47107 1.30889 1.42022 1.46228 1.54454 2.06588 2.17343 2.41811 2.58021 3.01017 3.02369 3.28371 3.59005 3.75488 3.77662 3.90038 4.07432 4.17438 4.28747 4.39256 4.54312 4.63895 4.87459 4.99170 5.02428 5.11130 5.15743 5.20068 5.31171 5.38637 5.48510 5.54113 5.76854 5.94546 6.40684 6.55202 6.65608 7.08172 7.25407 8.79454 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002999 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.620400 B = 9334.452419 C =10309.580742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.578 3.422 12 O -0.581 6.581 13 C -0.312 4.312 14 C 0.119 3.881 15 N -0.479 5.479 16 C 0.067 3.933 17 C -0.004 4.004 18 C -0.133 4.133 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.165 4.165 23 C 0.081 3.919 24 F -0.145 7.145 25 S 0.208 5.792 26 H 0.271 0.729 27 H -0.004 1.004 28 H -0.003 1.003 29 H 0.403 0.597 30 H 0.191 0.809 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.648 -21.138 -5.083 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.600 4.600 8 H 0.100 0.900 9 C 0.145 3.855 10 N -0.348 5.348 11 C 0.364 3.636 12 O -0.464 6.464 13 C -0.437 4.437 14 C -0.039 4.039 15 N -0.193 5.193 16 C -0.208 4.208 17 C -0.044 4.044 18 C -0.135 4.135 19 C -0.097 4.097 20 C -0.149 4.149 21 C -0.106 4.106 22 C -0.183 4.183 23 C 0.062 3.938 24 F -0.124 7.124 25 S 0.466 5.534 26 H 0.080 0.920 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.238 0.762 30 H 0.207 0.793 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.388 -20.808 -5.028 29.563 hybrid contribution -0.858 1.101 0.148 1.403 sum 19.530 -19.708 -4.880 28.172 Atomic orbital electron populations 1.70115 1.08205 1.28832 1.49419 1.26042 0.95805 1.03806 0.93574 0.85205 0.77978 0.76495 0.79574 1.18639 1.20818 1.18587 1.21534 0.94241 0.90470 1.53759 0.90016 1.18686 0.88422 0.83576 0.94859 1.46176 1.11173 1.05301 1.72169 1.17258 0.87128 0.82544 0.76627 1.90762 1.17232 1.85144 1.53258 1.25683 0.98204 0.98736 1.21031 1.22268 0.99920 0.86667 0.95092 1.66263 0.97434 1.37923 1.17669 1.27795 0.98367 0.94797 0.99800 1.19358 0.88270 1.02397 0.94393 1.19718 1.01771 0.95617 0.96414 1.21288 0.97306 0.95658 0.95491 1.21611 0.98068 1.00894 0.94301 1.21445 0.96177 0.91830 1.01168 1.21442 1.03271 1.00412 0.93212 1.17925 1.00692 0.82298 0.92931 1.91488 1.91372 1.45924 1.83578 1.84003 0.97568 1.07242 1.64570 0.92040 0.98632 0.98545 0.76197 0.79268 0.84693 0.86692 0.83175 0.82651 0.82382 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.01 0.44 5.46 84.66 0.46 0.91 16 3 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -31.14 9.28 25.60 0.24 -30.90 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.09 16 9 C 0.27 15.00 5.43 85.63 0.46 15.47 16 10 N -0.70 -32.03 5.54 -470.81 -2.61 -34.64 16 11 C 0.58 25.71 7.79 86.45 0.67 26.38 16 12 O -0.58 -30.26 16.87 -4.29 -0.07 -30.33 16 13 C -0.31 -10.75 6.48 23.88 0.15 -10.60 16 14 C 0.12 3.67 11.09 84.23 0.93 4.60 16 15 N -0.48 -12.70 10.51 -190.30 -2.00 -14.70 16 16 C 0.07 1.53 6.62 88.46 0.59 2.12 16 17 C 0.00 -0.06 5.70 29.10 0.17 0.11 16 18 C -0.13 -2.16 5.12 -19.82 -0.10 -2.26 16 19 C -0.08 -1.04 9.68 22.26 0.22 -0.82 16 20 C -0.13 -1.39 10.05 22.27 0.22 -1.17 16 21 C -0.09 -0.97 10.04 22.26 0.22 -0.74 16 22 C -0.16 -2.43 10.03 22.31 0.22 -2.20 16 23 C 0.08 1.47 7.24 22.38 0.16 1.63 16 24 F -0.14 -3.00 16.57 44.97 0.75 -2.26 16 25 S 0.21 5.47 22.31 -56.49 -1.26 4.21 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.40 15.93 7.50 -92.71 -0.70 15.24 16 30 H 0.19 5.61 8.06 -2.91 -0.02 5.59 16 31 H 0.14 1.49 8.05 -2.39 -0.02 1.48 16 32 H 0.11 1.46 7.79 -2.39 -0.02 1.44 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -73.28 341.77 2.18 -71.10 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.44 Total: 15.32 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.63 Total: 2.53 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.33 Total: -105.04 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.07 Total: -30.33 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.75 Total: -2.26 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.26 Total: 4.21 kcal Total: -73.28 2.18 -71.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427656649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.906 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds