Wall clock time and date at job start Tue Mar 31 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35767 * 117.00337 * 2 1 4 4 C 1.39003 * 119.88253 * 359.97438 * 3 2 1 5 5 C 1.37661 * 120.12770 * 180.02562 * 4 3 2 6 6 C 1.40019 * 119.90467 * 0.02562 * 5 4 3 7 7 C 1.46942 * 120.11108 * 179.97438 * 6 5 4 8 8 C 1.35138 * 119.99799 * 179.97438 * 7 6 5 9 9 C 1.41808 * 120.00019 * 180.02562 * 8 7 6 10 10 O 1.21781 * 119.99850 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99989 * 179.72668 * 9 8 7 12 12 C 1.36746 * 119.99807 * 180.27611 * 11 9 8 13 13 H 1.07993 * 120.00437 * 20.40150 * 12 11 9 14 14 C 1.39095 * 119.99793 * 200.39852 * 12 11 9 15 15 N 1.31351 * 120.00058 * 21.46530 * 14 12 11 16 16 Si 1.86800 * 120.00329 * 201.45856 * 14 12 11 17 17 H 1.48504 * 109.46857 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47080 * 119.99909 * 16 14 12 19 19 H 1.48496 * 109.47392 * 240.00505 * 16 14 12 20 20 C 1.46503 * 120.00093 * 0.27385 * 11 9 8 21 21 C 1.47198 * 109.47090 * 83.82841 * 20 11 9 22 22 N 8.52173 * 144.52575 * 330.39971 * 2 1 3 23 23 C 1.39994 * 119.77521 * 0.25117 * 6 5 4 24 24 C 1.37771 * 119.86637 * 359.48901 * 23 6 5 25 25 Cl 1.73592 * 119.95326 * 180.23129 * 24 23 6 26 26 H 1.08997 * 109.47658 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47437 * 300.00938 * 1 2 3 28 28 H 1.09004 * 109.46744 * 60.00301 * 1 2 3 29 29 H 1.07994 * 119.93982 * 0.04738 * 4 3 2 30 30 H 1.08003 * 120.05112 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.00629 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.00084 * 0.02562 * 8 7 6 33 33 H 0.96988 * 120.00007 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46888 * 203.83642 * 20 11 9 35 35 H 1.09011 * 109.46738 * 323.83164 * 20 11 9 36 36 H 1.07993 * 120.06356 * 179.72622 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2860 2.3739 -0.0005 5 6 1.9058 3.6031 -0.0011 6 6 3.3038 3.6800 -0.0016 7 6 3.9701 4.9896 -0.0028 8 6 5.3196 5.0612 -0.0028 9 6 5.9627 6.3250 -0.0033 10 8 5.2988 7.3460 -0.0043 11 7 7.3085 6.3964 0.0023 12 6 7.9286 7.6152 0.0074 13 1 7.3909 8.4932 0.3332 14 6 9.2519 7.7239 -0.4069 15 7 9.7762 6.8003 -1.1797 16 14 10.2836 9.1837 0.1356 17 1 9.4654 10.0755 0.9962 18 1 11.4604 8.7007 0.9016 19 1 10.7450 9.9351 -1.0593 20 6 8.1072 5.1682 0.0028 21 6 8.2552 4.6785 -1.3774 22 7 8.3688 4.3001 -2.4428 23 6 4.0647 2.5049 -0.0069 24 6 3.4347 1.2796 -0.0010 25 17 4.3760 -0.1789 -0.0015 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2077 2.3141 -0.0002 30 1 1.3145 4.5069 -0.0011 31 1 3.3815 5.8951 -0.0028 32 1 5.9084 4.1557 -0.0023 33 1 10.6989 6.8763 -1.4689 34 1 9.0916 5.3752 0.4225 35 1 7.6072 4.4100 0.6057 36 1 5.1433 2.5587 -0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491353353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:01 Heat of formation + Delta-G solvation = -7.701925 kcal Electronic energy + Delta-G solvation = -23161.264634 eV Core-core repulsion = 19444.483425 eV Total energy + Delta-G solvation = -3716.781209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26828 -40.74261 -38.78777 -37.65270 -37.41575 -36.21582 -34.50526 -33.71778 -32.03921 -30.40114 -29.19845 -28.34699 -26.95469 -24.60366 -23.78847 -22.16704 -20.00173 -19.65130 -19.38095 -18.56435 -18.03566 -17.33751 -16.81166 -16.76852 -16.45723 -15.96861 -15.54253 -15.30879 -15.01980 -14.89307 -14.73219 -14.56137 -14.32299 -13.88399 -13.52535 -13.35248 -13.24290 -12.96902 -12.87717 -12.70514 -12.63695 -12.37818 -12.28877 -12.16291 -12.05764 -11.97023 -11.82471 -11.16120 -10.72225 -10.50143 -9.95910 -9.92831 -8.85208 -8.45052 -5.95887 -0.46823 0.12455 0.93928 1.14799 1.45132 1.48878 1.61856 1.91449 2.22082 2.22803 2.35689 2.42494 2.75258 3.06060 3.18263 3.58009 3.65801 3.73707 3.92277 4.10888 4.12872 4.28422 4.39350 4.44299 4.45236 4.59555 4.72335 4.78434 4.83222 4.89600 5.07222 5.12809 5.40111 5.45521 5.51087 5.64368 6.07694 6.25587 6.40767 6.99347 7.10414 7.31653 7.93354 8.58707 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.003011 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.637832 B = 9296.663663 C =10223.853502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.140 3.860 4 C -0.192 4.192 5 C -0.048 4.048 6 C -0.101 4.101 7 C -0.024 4.024 8 C -0.209 4.209 9 C 0.472 3.528 10 O -0.630 6.630 11 N -0.443 5.443 12 C -0.337 4.337 13 H 0.085 0.915 14 C 0.005 3.995 15 N -0.886 5.886 16 Si 0.990 3.010 17 H -0.269 1.269 18 H -0.262 1.262 19 H -0.288 1.288 20 C 0.220 3.780 21 C 0.256 3.744 22 N -0.503 5.503 23 C -0.065 4.065 24 C -0.088 4.088 25 Cl -0.063 7.063 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.277 0.723 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 -14.098 6.723 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.092 3.908 4 C -0.210 4.210 5 C -0.066 4.066 6 C -0.102 4.102 7 C -0.045 4.045 8 C -0.229 4.229 9 C 0.267 3.733 10 O -0.519 6.519 11 N -0.161 5.161 12 C -0.465 4.465 13 H 0.103 0.897 14 C -0.198 4.198 15 N -0.523 5.523 16 Si 0.814 3.186 17 H -0.193 1.193 18 H -0.186 1.186 19 H -0.214 1.214 20 C 0.093 3.907 21 C -0.062 4.062 22 N -0.183 5.183 23 C -0.084 4.084 24 C -0.115 4.115 25 Cl -0.035 7.035 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.191 0.809 30 H 0.179 0.821 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.533 -14.532 5.072 21.867 hybrid contribution 0.917 1.032 0.134 1.387 sum -14.616 -13.499 5.206 20.566 Atomic orbital electron populations 1.23476 0.75663 1.05978 1.02901 1.86114 1.24043 1.25687 1.87624 1.19029 0.90199 0.86174 0.95368 1.21445 1.01805 0.90254 1.07521 1.21574 0.92621 0.99010 0.93355 1.18873 0.94088 0.91370 1.05824 1.22210 0.94005 0.95921 0.92345 1.22114 0.96537 0.96792 1.07484 1.17530 0.82408 0.90307 0.83027 1.90626 1.64570 1.39050 1.57646 1.43749 1.04348 1.05772 1.62202 1.19688 0.95593 0.87533 1.43679 0.89710 1.26028 0.98303 1.01367 0.94131 1.69904 1.15910 1.36988 1.29499 0.84921 0.78032 0.77720 0.77925 1.19308 1.18613 1.21449 1.19088 1.00127 0.86756 0.84718 1.29693 0.90593 0.90172 0.95751 1.80903 1.11381 1.13424 1.12621 1.21261 1.01052 0.89490 0.96588 1.20159 0.89536 0.88519 1.13278 1.98359 1.72145 1.35735 1.97236 0.86291 0.90849 0.91101 0.80920 0.82147 0.85142 0.84486 0.91314 0.85780 0.84503 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.91 9.94 -90.94 -0.90 -6.81 16 3 C 0.14 2.86 6.69 22.66 0.15 3.01 16 4 C -0.19 -3.08 9.01 22.32 0.20 -2.88 16 5 C -0.05 -0.89 9.79 22.57 0.22 -0.67 16 6 C -0.10 -2.51 5.87 -20.14 -0.12 -2.63 16 7 C -0.02 -0.73 9.42 23.84 0.22 -0.50 16 8 C -0.21 -7.46 8.30 22.44 0.19 -7.28 16 9 C 0.47 22.03 7.34 85.12 0.62 22.66 16 10 O -0.63 -34.17 15.78 -4.61 -0.07 -34.24 16 11 N -0.44 -20.95 2.59 -655.32 -1.70 -22.65 16 12 C -0.34 -17.62 9.26 84.13 0.78 -16.84 16 13 H 0.09 4.78 7.42 -2.91 -0.02 4.75 16 14 C 0.00 0.24 4.83 84.97 0.41 0.65 16 15 N -0.89 -44.29 9.59 21.69 0.21 -44.08 16 16 Si 0.99 39.70 29.61 68.60 2.03 41.73 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.22 8.50 4.79 84.57 0.40 8.91 16 21 C 0.26 11.23 13.14 89.44 1.18 12.40 16 22 N -0.50 -24.04 18.54 20.01 0.37 -23.67 16 23 C -0.07 -1.64 9.18 22.58 0.21 -1.44 16 24 C -0.09 -2.12 6.32 22.37 0.14 -1.98 16 25 Cl -0.06 -1.54 28.49 -2.72 -0.08 -1.62 16 26 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 28 H 0.07 0.44 7.65 -2.38 -0.02 0.42 16 29 H 0.17 1.50 6.27 -2.91 -0.02 1.48 16 30 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.13 4.18 7.45 -2.91 -0.02 4.16 16 32 H 0.14 4.17 4.09 -2.91 -0.01 4.16 16 33 H 0.28 13.26 8.31 -92.72 -0.77 12.49 16 34 H 0.12 4.84 6.63 -2.39 -0.02 4.82 16 35 H 0.14 3.86 6.44 -2.38 -0.02 3.85 16 36 H 0.14 3.51 6.16 -2.91 -0.02 3.50 16 Total: -1.00 -70.90 333.86 6.73 -64.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.15 Total: 12.53 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.72 Total: 14.64 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -1.12 Total: -90.40 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.98 Total: -41.05 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -70.90 6.73 -64.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.468 kcal (2) G-P(sol) polarization free energy of solvation -70.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds