Wall clock time and date at job start Tue Mar 31 2020 13:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00002 * 3 2 1 5 5 H 1.48507 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46975 * 119.99953 * 3 2 1 7 7 C 1.40031 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 170.17715 * 7 2 1 9 9 C 1.41538 * 120.00024 * 350.18095 * 7 2 1 10 10 C 1.41179 * 120.99209 * 151.66980 * 9 7 2 11 11 C 1.37594 * 119.01114 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11303 * 359.72751 * 11 10 9 13 13 C 1.32474 * 122.22860 * 0.57459 * 12 11 10 14 14 N 1.39472 * 119.58066 * 179.70626 * 13 12 11 15 15 C 1.34770 * 120.00022 * 5.09099 * 14 13 12 16 16 O 1.21277 * 119.99930 * 354.97765 * 15 14 13 17 17 C 1.50702 * 120.00217 * 174.98274 * 15 14 13 18 18 C 1.52997 * 109.47131 * 180.02562 * 17 15 14 19 19 N 1.46499 * 109.47186 * 179.97438 * 18 17 15 20 20 C 1.35048 * 126.03670 * 124.99492 * 19 18 17 21 21 C 1.35375 * 107.72464 * 179.97438 * 20 19 18 22 22 Cl 1.73604 * 126.04392 * 179.97438 * 21 20 19 23 23 C 1.39928 * 107.91259 * 0.02562 * 21 20 19 24 24 N 1.30859 * 108.20930 * 359.74945 * 23 21 20 25 25 C 1.38597 * 120.83795 * 359.42632 * 13 12 11 26 26 H 0.97001 * 119.99860 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.49719 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.44398 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99805 * 185.09887 * 14 13 12 30 30 H 1.08994 * 109.46871 * 59.99498 * 17 15 14 31 31 H 1.09003 * 109.46692 * 299.99906 * 17 15 14 32 32 H 1.09003 * 109.47115 * 299.99475 * 18 17 15 33 33 H 1.09004 * 109.47323 * 59.99564 * 18 17 15 34 34 H 1.07997 * 126.13556 * 359.94729 * 20 19 18 35 35 H 1.07993 * 125.89484 * 180.02562 * 23 21 20 36 36 H 1.08001 * 120.60219 * 180.29950 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0758 -1.2196 -0.1590 9 6 1.3155 -2.4294 0.2101 10 6 1.7910 -3.6401 -0.3387 11 6 1.0856 -4.7991 -0.1097 12 7 -0.0184 -4.7941 0.6153 13 6 -0.5093 -3.6847 1.1473 14 7 -1.6829 -3.7421 1.8987 15 6 -2.2541 -4.9331 2.1661 16 8 -1.8003 -5.9465 1.6784 17 6 -3.4570 -5.0057 3.0712 18 6 -3.9049 -6.4622 3.2083 19 7 -5.0738 -6.5328 4.0886 20 6 -6.2642 -7.0937 3.7851 21 6 -7.0727 -6.9526 4.8617 22 17 -8.7140 -7.5044 4.9859 23 6 -6.3520 -6.2823 5.8563 24 7 -5.1524 -6.0348 5.3956 25 6 0.1317 -2.4685 0.9715 26 1 -0.4850 0.8401 -0.0004 27 1 2.6949 -3.6564 -0.9295 28 1 1.4433 -5.7293 -0.5259 29 1 -2.0880 -2.9249 2.2287 30 1 -4.2677 -4.4142 2.6460 31 1 -3.1966 -4.6120 4.0537 32 1 -4.1652 -6.8563 2.2259 33 1 -3.0938 -7.0533 3.6337 34 1 -6.5245 -7.5691 2.8510 35 1 -6.7205 -6.0189 6.8366 36 1 -0.2692 -1.5671 1.4110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:28 Heat of formation + Delta-G solvation = 72.760538 kcal Electronic energy + Delta-G solvation = -22629.745892 eV Core-core repulsion = 18948.746548 eV Total energy + Delta-G solvation = -3680.999344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53821 -39.75164 -37.96769 -36.67763 -34.63842 -34.19543 -33.81017 -30.96758 -30.57657 -29.77345 -28.45410 -26.06239 -24.91621 -22.10301 -21.79711 -21.48490 -20.85228 -19.70033 -17.89594 -17.70883 -16.80250 -16.02375 -15.78326 -15.38459 -15.09357 -14.78342 -14.52391 -14.27398 -13.93435 -13.64262 -13.59028 -13.45995 -12.81371 -12.64869 -12.62977 -12.35180 -11.94085 -11.70305 -11.51029 -11.39887 -11.25790 -10.97120 -10.72317 -10.36745 -10.23783 -9.86323 -9.83728 -9.56277 -9.44444 -8.70278 -8.03490 -7.83351 -7.13343 -6.82516 -4.68729 1.45479 1.67690 2.30991 2.42186 2.51060 2.75225 2.97920 3.00707 3.11158 3.33817 3.49023 3.81574 4.27990 4.44737 4.58877 4.61848 4.72502 4.94495 5.10707 5.22093 5.29127 5.52263 5.59935 5.62367 5.90103 6.07498 6.49068 6.53135 6.54571 6.72181 6.87854 7.05127 7.25620 7.29183 7.37087 7.66658 7.85310 8.12028 8.33522 8.60947 8.68592 8.74162 9.57938 10.05065 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.002173 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.592945 B =12883.920610 C =13726.418157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.279 4.279 11 C 0.117 3.883 12 N -0.552 5.552 13 C 0.332 3.668 14 N -0.655 5.655 15 C 0.504 3.496 16 O -0.485 6.485 17 C -0.154 4.154 18 C 0.151 3.849 19 N -0.359 5.359 20 C 0.077 3.923 21 C -0.193 4.193 22 Cl -0.047 7.047 23 C 0.062 3.938 24 N -0.279 5.279 25 C -0.235 4.235 26 H 0.282 0.718 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.410 0.590 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.184 0.816 35 H 0.190 0.810 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 -6.983 8.094 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.134 3.866 10 C -0.303 4.303 11 C -0.038 4.038 12 N -0.271 5.271 13 C 0.108 3.892 14 N -0.300 5.300 15 C 0.288 3.712 16 O -0.356 6.356 17 C -0.195 4.195 18 C 0.030 3.970 19 N -0.141 5.141 20 C -0.071 4.071 21 C -0.232 4.232 22 Cl -0.019 7.019 23 C -0.125 4.125 24 N -0.100 5.100 25 C -0.260 4.260 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.142 0.858 29 H 0.245 0.755 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.207 0.793 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.456 -7.922 8.076 16.827 hybrid contribution -0.443 1.727 -0.245 1.799 sum -12.900 -6.195 7.831 16.313 Atomic orbital electron populations 1.69731 1.07568 1.29404 1.35554 1.25944 0.94894 1.01441 0.91966 0.86249 0.79987 0.79748 0.80068 1.18888 1.20248 1.18755 1.19538 0.95848 0.89985 1.43399 0.90035 1.17590 0.90219 0.92306 0.86441 1.21959 1.04487 0.94590 1.09259 1.21774 0.90767 0.96560 0.94673 1.67200 1.15600 1.28086 1.16253 1.18192 0.86788 0.91019 0.93224 1.43394 1.24927 1.09069 1.52659 1.20260 0.84597 0.84214 0.82105 1.90803 1.62042 1.33621 1.49139 1.21901 0.97956 0.97504 1.02130 1.21586 0.85053 0.97547 0.92790 1.48672 1.10798 1.43361 1.11268 1.22326 0.85790 0.98989 1.00032 1.20771 0.89901 1.14978 0.97553 1.98325 1.16580 1.88838 1.98163 1.23887 0.90543 0.97983 1.00096 1.77508 1.19360 1.20928 0.92234 1.21609 1.01385 0.95445 1.07570 0.90705 0.87865 0.85789 0.75518 0.88479 0.87503 0.87162 0.88112 0.79904 0.79278 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.25 10.83 55.55 0.60 -18.65 16 2 C 0.08 1.79 5.30 -17.34 -0.09 1.70 16 3 Si 0.92 17.68 29.57 -169.99 -5.03 12.65 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.46 -11.49 9.13 -37.65 -0.34 -11.83 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 9 C 0.14 3.67 5.58 -106.55 -0.59 3.08 16 10 C -0.28 -6.68 9.90 -38.70 -0.38 -7.06 16 11 C 0.12 2.71 11.15 -17.68 -0.20 2.52 16 12 N -0.55 -13.55 7.85 -12.52 -0.10 -13.65 16 13 C 0.33 7.74 7.42 -154.70 -1.15 6.59 16 14 N -0.65 -11.98 5.39 -11.49 -0.06 -12.04 16 15 C 0.50 8.45 7.79 -10.99 -0.09 8.36 16 16 O -0.48 -9.95 14.24 5.56 0.08 -9.87 16 17 C -0.15 -1.77 5.89 -27.88 -0.16 -1.93 16 18 C 0.15 1.60 5.80 -4.04 -0.02 1.58 16 19 N -0.36 -3.82 3.68 -61.32 -0.23 -4.04 16 20 C 0.08 0.70 11.43 -17.16 -0.20 0.51 16 21 C -0.19 -1.84 6.65 -39.97 -0.27 -2.11 16 22 Cl -0.05 -0.41 29.30 -51.86 -1.52 -1.93 16 23 C 0.06 0.60 12.02 -17.33 -0.21 0.40 16 24 N -0.28 -3.27 12.42 30.64 0.38 -2.89 16 25 C -0.23 -5.78 8.59 -38.48 -0.33 -6.11 16 26 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 27 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 29 H 0.41 6.16 8.70 -40.82 -0.36 5.80 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 3.17 6.27 -52.49 -0.33 2.84 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -31.11 337.01 -8.43 -39.54 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.61 Total: 10.11 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.03 Total: -4.32 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.60 Total: -51.28 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.11 -8.43 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.300 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds