Wall clock time and date at job start Tue Mar 31 2020 13:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00002 * 3 2 1 5 5 H 1.48507 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46975 * 119.99953 * 3 2 1 7 7 C 1.40031 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 170.17715 * 7 2 1 9 9 C 1.41538 * 120.00024 * 350.18095 * 7 2 1 10 10 C 1.41179 * 120.99209 * 151.66980 * 9 7 2 11 11 C 1.37594 * 119.01114 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11303 * 359.72751 * 11 10 9 13 13 C 1.32474 * 122.22860 * 0.57459 * 12 11 10 14 14 N 1.39472 * 119.58066 * 179.70626 * 13 12 11 15 15 C 1.34770 * 120.00022 * 5.09099 * 14 13 12 16 16 O 1.21277 * 119.99930 * 354.97765 * 15 14 13 17 17 C 1.50702 * 120.00217 * 174.98274 * 15 14 13 18 18 C 1.52997 * 109.47131 * 180.02562 * 17 15 14 19 19 N 1.46499 * 109.47186 * 179.97438 * 18 17 15 20 20 C 1.35048 * 126.03670 * 124.99492 * 19 18 17 21 21 C 1.35375 * 107.72464 * 179.97438 * 20 19 18 22 22 Cl 1.73604 * 126.04392 * 179.97438 * 21 20 19 23 23 C 1.39928 * 107.91259 * 0.02562 * 21 20 19 24 24 N 1.30859 * 108.20930 * 359.74945 * 23 21 20 25 25 C 1.38597 * 120.83795 * 359.42632 * 13 12 11 26 26 H 0.97001 * 119.99860 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.49719 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.44398 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99805 * 185.09887 * 14 13 12 30 30 H 1.08994 * 109.46871 * 59.99498 * 17 15 14 31 31 H 1.09003 * 109.46692 * 299.99906 * 17 15 14 32 32 H 1.09003 * 109.47115 * 299.99475 * 18 17 15 33 33 H 1.09004 * 109.47323 * 59.99564 * 18 17 15 34 34 H 1.07997 * 126.13556 * 359.94729 * 20 19 18 35 35 H 1.07993 * 125.89484 * 180.02562 * 23 21 20 36 36 H 1.08001 * 120.60219 * 180.29950 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0758 -1.2196 -0.1590 9 6 1.3155 -2.4294 0.2101 10 6 1.7910 -3.6401 -0.3387 11 6 1.0856 -4.7991 -0.1097 12 7 -0.0184 -4.7941 0.6153 13 6 -0.5093 -3.6847 1.1473 14 7 -1.6829 -3.7421 1.8987 15 6 -2.2541 -4.9331 2.1661 16 8 -1.8003 -5.9465 1.6784 17 6 -3.4570 -5.0057 3.0712 18 6 -3.9049 -6.4622 3.2083 19 7 -5.0738 -6.5328 4.0886 20 6 -6.2642 -7.0937 3.7851 21 6 -7.0727 -6.9526 4.8617 22 17 -8.7140 -7.5044 4.9859 23 6 -6.3520 -6.2823 5.8563 24 7 -5.1524 -6.0348 5.3956 25 6 0.1317 -2.4685 0.9715 26 1 -0.4850 0.8401 -0.0004 27 1 2.6949 -3.6564 -0.9295 28 1 1.4433 -5.7293 -0.5259 29 1 -2.0880 -2.9249 2.2287 30 1 -4.2677 -4.4142 2.6460 31 1 -3.1966 -4.6120 4.0537 32 1 -4.1652 -6.8563 2.2259 33 1 -3.0938 -7.0533 3.6337 34 1 -6.5245 -7.5691 2.8510 35 1 -6.7205 -6.0189 6.8366 36 1 -0.2692 -1.5671 1.4110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:27 Heat of formation + Delta-G solvation = 54.618793 kcal Electronic energy + Delta-G solvation = -22630.532577 eV Core-core repulsion = 18948.746548 eV Total energy + Delta-G solvation = -3681.786029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29222 -41.27578 -39.63594 -37.37006 -36.19475 -35.51154 -35.24280 -32.48806 -31.81521 -30.82141 -29.87378 -27.91705 -25.93732 -23.86569 -23.26718 -22.21734 -21.87841 -21.13532 -19.48482 -18.80249 -18.13419 -17.31457 -17.04812 -16.98891 -16.16638 -16.07244 -15.79116 -15.69151 -15.26872 -14.98158 -14.76041 -14.36643 -14.32646 -14.22408 -13.93817 -13.49931 -13.19530 -12.88496 -12.73787 -12.69468 -12.45998 -12.26315 -12.12157 -11.93300 -11.49456 -11.44778 -11.18164 -11.09568 -10.61772 -9.92020 -9.65061 -9.42716 -8.89455 -8.60621 -6.58611 0.70763 0.72379 0.93350 0.99191 1.40992 1.51682 1.54173 1.59275 1.74717 1.82132 2.16913 2.20169 2.81710 3.43502 3.53965 3.70823 3.81591 3.84945 4.00594 4.21753 4.32169 4.39128 4.60158 4.68607 4.73649 4.76202 4.83821 4.90806 5.07568 5.22418 5.37251 5.46142 5.62019 5.79756 5.90815 6.11819 6.44539 6.51342 6.57409 6.77795 6.83127 7.23086 7.79342 8.28802 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.002173 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.592945 B =12883.920610 C =13726.418157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.487 4.487 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.294 4.294 11 C 0.112 3.888 12 N -0.573 5.573 13 C 0.332 3.668 14 N -0.652 5.652 15 C 0.505 3.495 16 O -0.522 6.522 17 C -0.133 4.133 18 C 0.156 3.844 19 N -0.367 5.367 20 C 0.081 3.919 21 C -0.204 4.204 22 Cl -0.041 7.041 23 C 0.063 3.937 24 N -0.313 5.313 25 C -0.254 4.254 26 H 0.291 0.709 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.424 0.576 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.211 0.789 35 H 0.212 0.788 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -6.491 8.472 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.318 4.318 11 C -0.042 4.042 12 N -0.292 5.292 13 C 0.106 3.894 14 N -0.299 5.299 15 C 0.292 3.708 16 O -0.395 6.395 17 C -0.173 4.173 18 C 0.035 3.965 19 N -0.148 5.148 20 C -0.067 4.067 21 C -0.243 4.243 22 Cl -0.013 7.013 23 C -0.124 4.124 24 N -0.134 5.134 25 C -0.279 4.279 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.261 0.739 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.600 -7.434 8.476 17.665 hybrid contribution -0.190 1.500 -0.344 1.550 sum -13.790 -5.935 8.132 17.074 Atomic orbital electron populations 1.69774 1.08839 1.30847 1.35074 1.26790 0.95709 1.04458 0.90946 0.85152 0.78663 0.75276 0.80038 1.18546 1.19084 1.18414 1.19824 0.96182 0.90941 1.44801 0.89903 1.18034 0.91126 0.93332 0.87083 1.22139 1.05268 0.94490 1.09868 1.22246 0.90363 0.97508 0.94076 1.67348 1.16271 1.28550 1.17078 1.18440 0.87853 0.90356 0.92791 1.43465 1.23700 1.10673 1.52037 1.21093 0.85180 0.82887 0.81659 1.90782 1.63407 1.34701 1.50640 1.21759 0.95788 0.98823 1.00968 1.21483 0.85085 0.96552 0.93392 1.48607 1.11116 1.44012 1.11080 1.22810 0.84974 0.98030 1.00910 1.20903 0.90354 1.15256 0.97743 1.98328 1.16009 1.88764 1.98157 1.24319 0.90010 0.97075 1.00960 1.77475 1.20487 1.22422 0.93019 1.21591 1.01945 0.95841 1.08546 0.89812 0.86609 0.83065 0.73867 0.86230 0.86726 0.85883 0.89285 0.77273 0.77189 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.67 10.83 21.84 0.24 -39.43 16 2 C 0.04 1.75 5.30 85.29 0.45 2.20 16 3 Si 0.99 35.66 29.57 68.60 2.03 37.69 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.49 -24.89 9.13 23.52 0.21 -24.67 16 8 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 9 C 0.11 5.92 5.58 -21.12 -0.12 5.80 16 10 C -0.29 -14.29 9.90 22.84 0.23 -14.07 16 11 C 0.11 5.23 11.15 84.50 0.94 6.17 16 12 N -0.57 -28.29 7.85 -193.52 -1.52 -29.81 16 13 C 0.33 15.62 7.42 132.75 0.98 16.60 16 14 N -0.65 -23.67 5.39 -308.66 -1.66 -25.33 16 15 C 0.51 16.55 7.79 87.66 0.68 17.23 16 16 O -0.52 -21.28 14.24 -3.02 -0.04 -21.32 16 17 C -0.13 -2.82 5.89 29.85 0.18 -2.65 16 18 C 0.16 3.07 5.80 86.38 0.50 3.57 16 19 N -0.37 -7.12 3.68 -347.93 -1.28 -8.40 16 20 C 0.08 1.30 11.43 83.54 0.95 2.25 16 21 C -0.20 -3.48 6.65 22.02 0.15 -3.34 16 22 Cl -0.04 -0.63 29.30 -2.72 -0.08 -0.71 16 23 C 0.06 1.12 12.02 85.25 1.02 2.15 16 24 N -0.31 -6.87 12.42 -56.98 -0.71 -7.57 16 25 C -0.25 -12.77 8.59 22.98 0.20 -12.57 16 26 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 27 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.15 6.02 8.06 -2.91 -0.02 6.00 16 29 H 0.42 12.51 8.70 -92.71 -0.81 11.70 16 30 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 2.10 8.03 -2.39 -0.02 2.08 16 33 H 0.09 1.97 8.10 -2.39 -0.02 1.96 16 34 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.12 6.24 6.27 -2.91 -0.02 6.22 16 Total: -1.00 -67.39 337.01 3.69 -63.70 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.33 Total: 32.52 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.38 Total: -1.32 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.93 Total: -110.55 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -67.39 3.69 -63.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.320 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds