Wall clock time and date at job start Tue Mar 31 2020 13:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29431 * 124.80223 * 2 1 4 4 C 1.30943 * 117.36313 * 180.02562 * 3 2 1 5 5 C 1.35679 * 114.19211 * 0.02562 * 4 3 2 6 6 C 1.46646 * 126.13494 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00236 * 356.29447 * 6 5 4 8 8 N 1.34774 * 120.00091 * 176.28965 * 6 5 4 9 9 C 1.46499 * 120.00064 * 6.12550 * 8 6 5 10 10 C 1.50699 * 109.46970 * 277.11062 * 9 8 6 11 11 H 1.08003 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00026 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99937 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00079 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46749 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47032 * 119.99778 * 14 12 10 17 17 H 1.48496 * 109.47354 * 240.00411 * 14 12 10 18 18 C 1.39956 * 120.00033 * 186.11834 * 8 6 5 19 19 C 1.38868 * 120.04454 * 353.08292 * 18 8 6 20 20 C 1.38115 * 119.95059 * 179.74474 * 19 18 8 21 21 C 1.38484 * 120.04358 * 0.25251 * 20 19 18 22 22 F 1.35100 * 119.94536 * 180.02562 * 21 20 19 23 23 C 1.38471 * 120.09661 * 359.97438 * 21 20 19 24 24 C 1.38106 * 120.04639 * 0.02794 * 23 21 20 25 25 S 1.70954 * 124.80475 * 180.30587 * 2 1 3 26 26 H 1.09005 * 109.46670 * 89.97678 * 1 2 3 27 27 H 1.09000 * 109.47268 * 209.97484 * 1 2 3 28 28 H 1.08996 * 109.47467 * 329.98092 * 1 2 3 29 29 H 1.08002 * 122.90351 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47272 * 37.11174 * 9 8 6 31 31 H 1.09003 * 109.47445 * 157.11014 * 9 8 6 32 32 H 0.96993 * 119.99684 * 180.02562 * 13 12 10 33 33 H 1.07992 * 120.02896 * 0.02562 * 19 18 8 34 34 H 1.07996 * 119.97941 * 180.27231 * 20 19 18 35 35 H 1.08002 * 119.97673 * 180.02562 * 23 21 20 36 36 H 1.07999 * 120.02099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9352 -0.4059 -0.0015 6 6 5.3186 -0.8926 -0.0028 7 8 6.2416 -0.1024 -0.0712 8 7 5.5678 -2.2150 0.0717 9 6 4.4608 -3.1732 0.0188 10 6 3.8504 -3.3116 1.3896 11 1 4.2470 -2.7425 2.2174 12 6 2.7848 -4.1641 1.5868 13 7 2.3015 -4.8568 0.5787 14 14 2.0276 -4.3352 3.2859 15 1 2.7483 -3.4545 4.2399 16 1 0.5970 -3.9403 3.2323 17 1 2.1351 -5.7462 3.7360 18 6 6.8841 -2.6729 0.1997 19 6 7.9432 -1.7796 0.1057 20 6 9.2412 -2.2328 0.2375 21 6 9.4871 -3.5777 0.4579 22 9 10.7575 -4.0187 0.5870 23 6 8.4326 -4.4708 0.5472 24 6 7.1332 -4.0219 0.4160 25 16 2.4828 -1.4037 -0.0075 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5141 29 1 4.2433 1.7164 -0.0010 30 1 3.7051 -2.8169 -0.6812 31 1 4.8345 -4.1422 -0.3121 32 1 1.5516 -5.4562 0.7174 33 1 7.7519 -0.7307 -0.0657 34 1 10.0650 -1.5378 0.1689 35 1 8.6266 -5.5192 0.7196 36 1 6.3111 -4.7187 0.4861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575460214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:16 Heat of formation + Delta-G solvation = 10.076211 kcal Electronic energy + Delta-G solvation = -24258.678871 eV Core-core repulsion = 20557.085075 eV Total energy + Delta-G solvation = -3701.593795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.51731 -40.42621 -38.95420 -37.64644 -35.54469 -33.09797 -31.83914 -30.74900 -29.69968 -28.09947 -27.33397 -24.10809 -23.74859 -22.68422 -22.13269 -20.56241 -18.30233 -17.98158 -17.35207 -17.15133 -16.65186 -16.22770 -15.26550 -15.23581 -14.98586 -14.87143 -14.46185 -14.14588 -14.08232 -13.49092 -13.18037 -12.87927 -12.82353 -12.78267 -12.46384 -12.34958 -12.19182 -11.98827 -11.80464 -11.34103 -11.12915 -10.86128 -10.59249 -10.51192 -10.35590 -9.44108 -9.21447 -9.01308 -8.75301 -8.66213 -8.62598 -8.14044 -7.36016 -6.61552 -4.64649 0.81611 1.57174 1.63598 2.05511 2.47333 2.97311 2.99753 3.10285 3.14699 3.37406 3.66169 3.99829 4.14702 4.66686 4.68368 4.72606 4.95522 5.18727 5.30212 5.47838 5.65707 5.69233 5.70025 5.74775 5.87201 5.95505 6.10119 6.19270 6.34644 6.47242 6.61162 6.66768 6.70421 6.72326 6.97377 7.32013 7.42658 7.50793 7.74387 8.30010 8.33886 8.50751 8.94084 10.41704 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.005384 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.297684 B = 5199.332458 C = 6879.360288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.066 4.066 3 N -0.502 5.502 4 C 0.105 3.895 5 C -0.334 4.334 6 C 0.603 3.397 7 O -0.534 6.534 8 N -0.535 5.535 9 C 0.218 3.782 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.079 3.921 13 N -0.869 5.869 14 Si 0.892 3.108 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.164 3.836 19 C -0.152 4.152 20 C -0.135 4.135 21 C 0.053 3.947 22 F -0.151 7.151 23 C -0.132 4.132 24 C -0.120 4.120 25 S 0.381 5.619 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.274 0.726 33 H 0.190 0.810 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 1.687 -1.868 2.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.334 4.334 3 N -0.218 5.218 4 C -0.059 4.059 5 C -0.460 4.460 6 C 0.394 3.606 7 O -0.416 6.416 8 N -0.253 5.253 9 C 0.096 3.904 10 C -0.579 4.579 11 H 0.092 0.908 12 C -0.129 4.129 13 N -0.505 5.505 14 Si 0.718 3.282 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.201 1.201 18 C 0.068 3.932 19 C -0.171 4.171 20 C -0.155 4.155 21 C 0.033 3.967 22 F -0.130 7.130 23 C -0.152 4.152 24 C -0.141 4.141 25 S 0.648 5.352 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.189 0.811 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.206 0.794 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.660 1.380 -2.014 2.529 hybrid contribution 0.365 0.286 1.092 1.187 sum 1.025 1.666 -0.921 2.162 Atomic orbital electron populations 1.20294 0.86691 1.03322 1.02923 1.28476 1.03005 0.98273 1.03648 1.66232 1.04285 1.33064 1.18220 1.21807 0.91142 0.94798 0.98105 1.25581 0.98439 0.98862 1.23094 1.16941 0.86875 0.81306 0.75459 1.90343 1.43516 1.55911 1.51824 1.45735 1.06544 1.06947 1.66076 1.19952 0.82800 0.89038 0.98572 1.21487 1.15971 1.26183 0.94291 0.90834 1.24909 0.96019 0.94168 0.97796 1.69900 1.24633 1.25161 1.30774 0.86469 0.79446 0.78801 0.83469 1.19098 1.20051 1.20134 1.18016 0.83808 0.93160 0.98211 1.22724 0.89807 1.04122 1.00448 1.21079 0.98043 0.93496 1.02837 1.17736 0.78595 0.93305 1.07075 1.91431 1.37388 1.90218 1.93999 1.20845 0.91443 0.99634 1.03259 1.20953 0.96916 0.94509 1.01700 1.86426 0.91419 1.00645 1.56701 0.90388 0.90562 0.90560 0.81076 0.93567 0.91589 0.91587 0.79386 0.85213 0.84978 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.46 36.01 0.38 -0.60 16 2 C -0.07 -1.15 7.39 -13.29 -0.10 -1.24 16 3 N -0.50 -9.38 10.51 -11.50 -0.12 -9.50 16 4 C 0.11 1.96 11.09 -18.85 -0.21 1.75 16 5 C -0.33 -6.58 6.21 -37.11 -0.23 -6.81 16 6 C 0.60 12.37 7.53 -12.87 -0.10 12.27 16 7 O -0.53 -11.13 13.27 5.19 0.07 -11.06 16 8 N -0.53 -10.82 2.70 -116.19 -0.31 -11.13 16 9 C 0.22 4.53 4.24 -5.19 -0.02 4.51 16 10 C -0.54 -11.94 6.76 -34.44 -0.23 -12.17 16 11 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 12 C 0.08 1.74 4.95 -17.82 -0.09 1.66 16 13 N -0.87 -19.69 13.29 55.43 0.74 -18.95 16 14 Si 0.89 18.03 29.54 -169.99 -5.02 13.01 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 C 0.16 3.13 6.49 -83.68 -0.54 2.59 16 19 C -0.15 -2.73 9.05 -39.39 -0.36 -3.08 16 20 C -0.14 -2.16 10.02 -39.54 -0.40 -2.55 16 21 C 0.05 0.85 7.30 -39.40 -0.29 0.56 16 22 F -0.15 -2.38 17.26 2.25 0.04 -2.34 16 23 C -0.13 -2.08 10.02 -39.54 -0.40 -2.48 16 24 C -0.12 -2.10 9.17 -39.40 -0.36 -2.47 16 25 S 0.38 7.19 15.87 -107.50 -1.71 5.49 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.17 2.90 8.06 -52.49 -0.42 2.48 16 30 H 0.05 0.99 4.74 -24.04 -0.11 0.88 16 31 H 0.07 1.39 6.11 -51.93 -0.32 1.08 16 32 H 0.27 5.92 8.31 -40.82 -0.34 5.59 16 33 H 0.19 3.56 4.51 -56.28 -0.25 3.31 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.15 2.61 6.19 -52.49 -0.32 2.28 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -24.43 320.70 -7.52 -31.95 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.09 Total: 5.76 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.94 Total: -8.06 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.30 Total: -39.58 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.01 kcal Atomic # 16 Polarization: 7.19 SS G_CDS: -1.71 Total: 5.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.43 -7.52 -31.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575460214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.029 kcal (2) G-P(sol) polarization free energy of solvation -24.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds