Wall clock time and date at job start Tue Mar 31 2020 13:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29431 * 124.80223 * 2 1 4 4 C 1.30943 * 117.36313 * 180.02562 * 3 2 1 5 5 C 1.35679 * 114.19211 * 0.02562 * 4 3 2 6 6 C 1.46646 * 126.13494 * 179.97438 * 5 4 3 7 7 O 1.21704 * 120.00236 * 356.29447 * 6 5 4 8 8 N 1.34774 * 120.00091 * 176.28965 * 6 5 4 9 9 C 1.46499 * 120.00064 * 6.12550 * 8 6 5 10 10 C 1.50699 * 109.46970 * 277.11062 * 9 8 6 11 11 H 1.08003 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00026 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99937 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00079 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46749 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47032 * 119.99778 * 14 12 10 17 17 H 1.48496 * 109.47354 * 240.00411 * 14 12 10 18 18 C 1.39956 * 120.00033 * 186.11834 * 8 6 5 19 19 C 1.38868 * 120.04454 * 353.08292 * 18 8 6 20 20 C 1.38115 * 119.95059 * 179.74474 * 19 18 8 21 21 C 1.38484 * 120.04358 * 0.25251 * 20 19 18 22 22 F 1.35100 * 119.94536 * 180.02562 * 21 20 19 23 23 C 1.38471 * 120.09661 * 359.97438 * 21 20 19 24 24 C 1.38106 * 120.04639 * 0.02794 * 23 21 20 25 25 S 1.70954 * 124.80475 * 180.30587 * 2 1 3 26 26 H 1.09005 * 109.46670 * 89.97678 * 1 2 3 27 27 H 1.09000 * 109.47268 * 209.97484 * 1 2 3 28 28 H 1.08996 * 109.47467 * 329.98092 * 1 2 3 29 29 H 1.08002 * 122.90351 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47272 * 37.11174 * 9 8 6 31 31 H 1.09003 * 109.47445 * 157.11014 * 9 8 6 32 32 H 0.96993 * 119.99684 * 180.02562 * 13 12 10 33 33 H 1.07992 * 120.02896 * 0.02562 * 19 18 8 34 34 H 1.07996 * 119.97941 * 180.27231 * 20 19 18 35 35 H 1.08002 * 119.97673 * 180.02562 * 23 21 20 36 36 H 1.07999 * 120.02099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9352 -0.4059 -0.0015 6 6 5.3186 -0.8926 -0.0028 7 8 6.2416 -0.1024 -0.0712 8 7 5.5678 -2.2150 0.0717 9 6 4.4608 -3.1732 0.0188 10 6 3.8504 -3.3116 1.3896 11 1 4.2470 -2.7425 2.2174 12 6 2.7848 -4.1641 1.5868 13 7 2.3015 -4.8568 0.5787 14 14 2.0276 -4.3352 3.2859 15 1 2.7483 -3.4545 4.2399 16 1 0.5970 -3.9403 3.2323 17 1 2.1351 -5.7462 3.7360 18 6 6.8841 -2.6729 0.1997 19 6 7.9432 -1.7796 0.1057 20 6 9.2412 -2.2328 0.2375 21 6 9.4871 -3.5777 0.4579 22 9 10.7575 -4.0187 0.5870 23 6 8.4326 -4.4708 0.5472 24 6 7.1332 -4.0219 0.4160 25 16 2.4828 -1.4037 -0.0075 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5141 29 1 4.2433 1.7164 -0.0010 30 1 3.7051 -2.8169 -0.6812 31 1 4.8345 -4.1422 -0.3121 32 1 1.5516 -5.4562 0.7174 33 1 7.7519 -0.7307 -0.0657 34 1 10.0650 -1.5378 0.1689 35 1 8.6266 -5.5192 0.7196 36 1 6.3111 -4.7187 0.4861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575460214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:16 Heat of formation + Delta-G solvation = -1.193487 kcal Electronic energy + Delta-G solvation = -24259.167562 eV Core-core repulsion = 20557.085075 eV Total energy + Delta-G solvation = -3702.082486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.79404 -41.92728 -40.40410 -39.07142 -37.10687 -34.75765 -33.17825 -32.09044 -31.07689 -29.65196 -28.78911 -25.63414 -25.22742 -24.09745 -23.54217 -21.99836 -19.76145 -19.44684 -18.85367 -18.69909 -18.13028 -17.64972 -16.68267 -16.60619 -16.51587 -16.35432 -15.95155 -15.51974 -15.48146 -14.91155 -14.56431 -14.44512 -14.20587 -14.11330 -13.89373 -13.67659 -13.57885 -13.27571 -13.09283 -12.94425 -12.71672 -12.31911 -12.12526 -12.04708 -11.97358 -10.97277 -10.85024 -10.52631 -10.19149 -10.11264 -10.05233 -9.61321 -8.82215 -8.29954 -6.38418 -0.64099 0.19844 0.30329 0.58410 1.01252 1.38674 1.44835 1.49018 1.53998 1.87009 2.17387 2.35468 2.74320 3.01283 3.29894 3.36358 3.53053 3.91654 3.98199 4.20986 4.26245 4.30413 4.41304 4.49337 4.67481 4.70667 4.72691 4.87756 5.02318 5.05346 5.22272 5.23096 5.29996 5.33742 5.56226 5.61613 5.74946 6.08993 6.19957 6.60631 6.83724 6.94017 7.22851 8.72871 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.005384 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.297684 B = 5199.332458 C = 6879.360288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.047 4.047 3 N -0.515 5.515 4 C 0.110 3.890 5 C -0.353 4.353 6 C 0.595 3.405 7 O -0.545 6.545 8 N -0.538 5.538 9 C 0.227 3.773 10 C -0.541 4.541 11 H 0.052 0.948 12 C 0.059 3.941 13 N -0.886 5.886 14 Si 0.930 3.070 15 H -0.279 1.279 16 H -0.265 1.265 17 H -0.275 1.275 18 C 0.138 3.862 19 C -0.161 4.161 20 C -0.128 4.128 21 C 0.055 3.945 22 F -0.146 7.146 23 C -0.124 4.124 24 C -0.126 4.126 25 S 0.354 5.646 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.185 0.815 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.278 0.722 33 H 0.180 0.820 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 1.694 -1.711 2.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.316 4.316 3 N -0.231 5.231 4 C -0.054 4.054 5 C -0.478 4.478 6 C 0.387 3.613 7 O -0.429 6.429 8 N -0.256 5.256 9 C 0.106 3.894 10 C -0.583 4.583 11 H 0.070 0.930 12 C -0.147 4.147 13 N -0.522 5.522 14 Si 0.755 3.245 15 H -0.204 1.204 16 H -0.190 1.190 17 H -0.200 1.200 18 C 0.043 3.957 19 C -0.180 4.180 20 C -0.147 4.147 21 C 0.035 3.965 22 F -0.124 7.124 23 C -0.143 4.143 24 C -0.146 4.146 25 S 0.620 5.380 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.202 0.798 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.196 0.804 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.410 1.363 -1.853 2.337 hybrid contribution 0.476 0.359 1.015 1.177 sum 0.885 1.722 -0.838 2.110 Atomic orbital electron populations 1.20532 0.83618 1.04595 1.04829 1.29086 1.04733 0.96966 1.00790 1.66338 1.04243 1.33316 1.19213 1.22092 0.91597 0.94873 0.96800 1.25600 0.98353 0.99389 1.24455 1.17124 0.87234 0.81436 0.75478 1.90336 1.43859 1.56091 1.52566 1.45718 1.06974 1.06762 1.66182 1.19765 0.82923 0.88833 0.97912 1.21330 1.16400 1.26353 0.94175 0.92960 1.25228 0.96080 0.93937 0.99475 1.69928 1.25086 1.25621 1.31591 0.85906 0.79264 0.78342 0.80956 1.20419 1.18983 1.20025 1.18324 0.83587 0.94141 0.99692 1.22626 0.90467 1.03565 1.01358 1.21287 0.97863 0.94121 1.01424 1.17785 0.78844 0.93342 1.06538 1.91451 1.36968 1.90135 1.93893 1.21084 0.90484 1.00999 1.01706 1.20947 0.97642 0.93801 1.02244 1.86418 0.91813 1.01740 1.58024 0.88018 0.89352 0.89159 0.79795 0.93723 0.92271 0.91261 0.80368 0.82691 0.82326 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.46 71.24 0.75 -1.09 16 2 C -0.05 -1.56 7.39 88.46 0.65 -0.91 16 3 N -0.51 -18.58 10.51 -190.28 -2.00 -20.58 16 4 C 0.11 4.06 11.09 84.23 0.93 4.99 16 5 C -0.35 -14.01 6.21 23.87 0.15 -13.86 16 6 C 0.60 24.98 7.53 86.44 0.65 25.63 16 7 O -0.55 -23.18 13.27 -4.36 -0.06 -23.23 16 8 N -0.54 -22.31 2.70 -639.71 -1.73 -24.04 16 9 C 0.23 9.68 4.24 85.63 0.36 10.04 16 10 C -0.54 -24.44 6.76 25.60 0.17 -24.27 16 11 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 12 C 0.06 2.60 4.95 84.66 0.42 3.02 16 13 N -0.89 -39.94 13.29 21.45 0.28 -39.66 16 14 Si 0.93 36.50 29.54 68.60 2.03 38.53 16 15 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 18 C 0.14 5.32 6.49 38.15 0.25 5.57 16 19 C -0.16 -5.77 9.05 22.39 0.20 -5.57 16 20 C -0.13 -3.89 10.02 22.30 0.22 -3.67 16 21 C 0.05 1.65 7.30 22.38 0.16 1.82 16 22 F -0.15 -4.20 17.26 44.97 0.78 -3.42 16 23 C -0.12 -3.69 10.02 22.29 0.22 -3.47 16 24 C -0.13 -4.39 9.17 22.39 0.21 -4.18 16 25 S 0.35 13.30 15.87 -56.49 -0.90 12.41 16 26 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.19 6.15 8.06 -2.91 -0.02 6.13 16 30 H 0.05 1.96 4.74 -20.13 -0.10 1.87 16 31 H 0.06 2.57 6.11 -2.39 -0.01 2.56 16 32 H 0.28 11.84 8.31 -92.71 -0.77 11.07 16 33 H 0.18 6.84 4.51 -62.99 -0.28 6.55 16 34 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.14 5.07 6.19 -2.91 -0.02 5.05 16 Total: -1.00 -51.12 320.70 4.54 -46.58 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.79 Total: 19.37 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.35 Total: -5.95 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.44 Total: -84.27 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.42 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 13.30 SS G_CDS: -0.90 Total: 12.41 kcal Total: -51.12 4.54 -46.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575460214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.383 kcal (2) G-P(sol) polarization free energy of solvation -51.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds