Wall clock time and date at job start Tue Mar 31 2020 12:36:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86799 * 119.99762 * 2 1
4 4 H 1.48496 * 109.47139 * 270.00291 * 3 2 1
5 5 H 1.48503 * 109.47006 * 30.00495 * 3 2 1
6 6 H 1.48505 * 109.46884 * 150.00158 * 3 2 1
7 7 C 1.37880 * 120.00102 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99454 * 173.81264 * 7 2 1
9 9 C 1.50696 * 119.99915 * 353.81253 * 7 2 1
10 10 C 1.52992 * 115.55207 * 84.90898 * 9 7 2
11 11 S 1.81006 * 109.47019 * 39.92364 * 10 9 7
12 12 C 1.76200 * 99.99814 * 179.97438 * 11 10 9
13 13 N 1.31283 * 126.28712 * 0.02562 * 12 11 10
14 14 N 1.28660 * 109.44469 * 179.97438 * 13 12 11
15 15 C 1.31078 * 109.41727 * 0.02562 * 14 13 12
16 16 C 1.47738 * 126.30107 * 180.02562 * 15 14 13
17 17 C 1.39620 * 120.12493 * 179.69957 * 16 15 14
18 18 C 1.37906 * 119.87440 * 179.74374 * 17 16 15
19 19 C 1.38587 * 120.12305 * 0.55520 * 18 17 16
20 20 F 1.35098 * 119.87569 * 179.72092 * 19 18 17
21 21 C 1.38592 * 120.24695 * 359.69382 * 19 18 17
22 22 C 1.37900 * 120.12435 * 0.02562 * 21 19 18
23 23 O 1.34684 * 126.28182 * 179.71629 * 12 11 10
24 24 C 1.53004 * 117.51430 * 230.61150 * 9 7 2
25 25 C 1.53000 * 59.99920 * 107.47964 * 24 9 7
26 26 H 0.96996 * 120.00345 * 355.01305 * 1 2 3
27 27 H 1.09007 * 109.47471 * 159.92193 * 10 9 7
28 28 H 1.09002 * 109.47334 * 279.92362 * 10 9 7
29 29 H 1.08004 * 120.06167 * 0.02562 * 17 16 15
30 30 H 1.08000 * 119.93407 * 180.26847 * 18 17 16
31 31 H 1.08006 * 119.93728 * 180.02562 * 21 19 18
32 32 H 1.08006 * 120.06056 * 180.02562 * 22 21 19
33 33 H 1.09002 * 117.49448 * 214.96808 * 24 9 7
34 34 H 1.08999 * 117.50009 * 359.97438 * 24 9 7
35 35 H 1.08994 * 117.49946 * 252.50619 * 25 24 9
36 36 H 1.09004 * 117.51855 * 107.48113 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6526 0.7002
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 3.0798 -1.1966 -0.1013
9 6 1.2577 -2.4954 0.1395
10 6 0.6965 -3.0773 -1.1593
11 16 1.8976 -2.8443 -2.4933
12 6 1.0188 -3.5846 -3.8290
13 7 -0.1750 -4.1274 -3.7677
14 7 -0.5054 -4.5681 -4.9304
15 6 0.4630 -4.3254 -5.7798
16 6 0.4747 -4.6731 -7.2156
17 6 1.5776 -4.3461 -8.0068
18 6 1.5853 -4.6779 -9.3453
19 6 0.4962 -5.3243 -9.9079
20 9 0.5067 -5.6419 -11.2210
21 6 -0.6035 -5.6466 -9.1284
22 6 -0.6196 -5.3249 -7.7876
23 8 1.4460 -3.6924 -5.1017
24 6 1.7488 -3.4815 1.2013
25 6 0.4457 -2.7097 1.4185
26 1 -0.4850 0.8368 0.0730
27 1 0.5027 -4.1418 -1.0268
28 1 -0.2328 -2.5678 -1.4141
29 1 2.4251 -3.8384 -7.5703
30 1 2.4398 -4.4293 -9.9573
31 1 -1.4494 -6.1508 -9.5720
32 1 -1.4769 -5.5769 -7.1810
33 1 1.6721 -4.5449 0.9744
34 1 2.6126 -3.1893 1.7985
35 1 0.4520 -1.9097 2.1587
36 1 -0.4885 -3.2650 1.3344
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594901720.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:04
Heat of formation + Delta-G solvation = 43.532546 kcal
Electronic energy + Delta-G solvation = -22602.590406 eV
Core-core repulsion = 18902.447386 eV
Total energy + Delta-G solvation = -3700.143020 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-49.28953 -43.71588 -39.27696 -36.78680 -35.89964 -32.66345 -32.14579 -31.62209
-29.55171 -27.86480 -25.58385 -24.45960 -24.12947 -22.77327 -21.82544 -21.26226
-19.56644 -18.43672 -17.92545 -17.14411 -17.09964 -16.61605 -16.09200 -15.96180
-15.56773 -14.77176 -14.64156 -14.05852 -14.00136 -13.78584 -13.54633 -13.23631
-12.99756 -12.94140 -12.40679 -12.18036 -11.77331 -11.72667 -11.44676 -11.15587
-11.06039 -11.03064 -10.62413 -10.53439 -10.31948 -10.12653 -9.80281 -9.57814
-9.01907 -8.88733 -8.62666 -8.25048 -7.17832 -6.23759 -4.32458 0.20013
0.81411 1.13310 1.53929 2.53396 2.71504 2.94430 3.21176 3.28769
3.29031 3.31373 3.81145 4.08053 4.26956 4.40217 4.43785 4.80151
4.88497 5.06211 5.12623 5.25013 5.27471 5.37767 5.51439 5.58517
5.68123 5.81114 5.84600 5.98871 6.01592 6.27887 6.34048 6.37492
6.59655 6.66278 6.92676 7.13604 7.33288 7.67911 8.13751 8.40666
8.69757 9.35228 10.83936
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.022938 B = 0.002677 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.407436 B =10456.910592 C =11069.557344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.865 5.865
2 C 0.081 3.919
3 Si 0.889 3.111
4 H -0.276 1.276
5 H -0.284 1.284
6 H -0.271 1.271
7 C -0.501 4.501
8 H 0.067 0.933
9 C 0.046 3.954
10 C -0.061 4.061
11 S 0.107 5.893
12 C 0.142 3.858
13 N -0.304 5.304
14 N -0.257 5.257
15 C 0.170 3.830
16 C -0.015 4.015
17 C -0.060 4.060
18 C -0.152 4.152
19 C 0.113 3.887
20 F -0.136 7.136
21 C -0.152 4.152
22 C -0.045 4.045
23 O -0.208 6.208
24 C -0.205 4.205
25 C -0.143 4.143
26 H 0.265 0.735
27 H 0.070 0.930
28 H 0.099 0.901
29 H 0.144 0.856
30 H 0.144 0.856
31 H 0.146 0.854
32 H 0.150 0.850
33 H 0.069 0.931
34 H 0.083 0.917
35 H 0.086 0.914
36 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.694 -9.039 -14.921 17.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.499 5.499
2 C -0.126 4.126
3 Si 0.716 3.284
4 H -0.202 1.202
5 H -0.210 1.210
6 H -0.196 1.196
7 C -0.541 4.541
8 H 0.085 0.915
9 C 0.043 3.957
10 C -0.210 4.210
11 S 0.343 5.657
12 C -0.171 4.171
13 N -0.157 5.157
14 N -0.106 5.106
15 C -0.043 4.043
16 C -0.017 4.017
17 C -0.080 4.080
18 C -0.171 4.171
19 C 0.093 3.907
20 F -0.114 7.114
21 C -0.171 4.171
22 C -0.065 4.065
23 O -0.091 6.091
24 C -0.242 4.242
25 C -0.183 4.183
26 H 0.075 0.925
27 H 0.088 0.912
28 H 0.118 0.882
29 H 0.161 0.839
30 H 0.162 0.838
31 H 0.163 0.837
32 H 0.168 0.832
33 H 0.087 0.913
34 H 0.101 0.899
35 H 0.105 0.895
36 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 1.478 -8.819 -14.494 17.031
hybrid contribution 0.145 0.766 -0.657 1.019
sum 1.623 -8.053 -15.151 17.235
Atomic orbital electron populations
1.69996 1.06023 1.27466 1.46430 1.24975 0.94775 0.99142 0.93664
0.86639 0.80102 0.83139 0.78549 1.20186 1.21003 1.19592 1.20401
0.93078 0.88491 1.52180 0.91491 1.18485 0.98988 0.94259 0.83973
1.23506 0.99660 1.02359 0.95434 1.86713 1.21076 1.64677 0.93224
1.31610 0.96254 1.00757 0.88489 1.74975 1.10377 1.15721 1.14598
1.74335 1.22957 1.17164 0.96112 1.25107 0.84761 0.99011 0.95451
1.17235 0.96692 1.02762 0.85036 1.21162 0.97395 0.96847 0.92608
1.21052 0.98796 1.01540 0.95710 1.17902 0.95766 0.98807 0.78242
1.91522 1.96772 1.90645 1.32502 1.21078 0.98638 1.03594 0.93787
1.21062 0.97281 0.94149 0.93959 1.84991 1.42864 1.61208 1.19994
1.23125 0.98768 0.95674 1.06662 1.22582 0.92522 1.01200 1.01955
0.92542 0.91153 0.88238 0.83869 0.83796 0.83657 0.83224 0.91254
0.89892 0.89514 0.91419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -22.81 12.93 55.43 0.72 -22.09 16
2 C 0.08 2.04 5.39 -17.82 -0.10 1.94 16
3 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16
4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
7 C -0.50 -12.35 7.54 -34.44 -0.26 -12.61 16
8 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16
9 C 0.05 1.02 1.64 -155.66 -0.26 0.77 16
10 C -0.06 -1.29 5.34 37.15 0.20 -1.09 16
11 S 0.11 2.11 21.16 -107.50 -2.27 -0.16 16
12 C 0.14 2.76 8.53 52.53 0.45 3.21 16
13 N -0.30 -6.17 11.62 30.32 0.35 -5.82 16
14 N -0.26 -4.74 11.89 32.08 0.38 -4.36 16
15 C 0.17 2.73 7.98 -13.99 -0.11 2.62 16
16 C -0.02 -0.18 5.87 -104.98 -0.62 -0.80 16
17 C -0.06 -0.60 9.72 -39.19 -0.38 -0.98 16
18 C -0.15 -1.29 10.01 -39.57 -0.40 -1.68 16
19 C 0.11 1.01 7.30 -39.32 -0.29 0.72 16
20 F -0.14 -1.27 17.26 2.25 0.04 -1.23 16
21 C -0.15 -1.29 10.01 -39.57 -0.40 -1.68 16
22 C -0.04 -0.46 9.69 -39.19 -0.38 -0.84 16
23 O -0.21 -3.65 10.69 2.25 0.02 -3.63 16
24 C -0.21 -4.07 9.88 -26.73 -0.26 -4.33 16
25 C -0.14 -3.07 9.47 -26.73 -0.25 -3.33 16
26 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16
27 H 0.07 1.39 7.95 -51.91 -0.41 0.98 16
28 H 0.10 2.34 8.14 -51.92 -0.42 1.92 16
29 H 0.14 1.30 7.93 -52.48 -0.42 0.88 16
30 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16
31 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16
32 H 0.15 1.45 7.86 -52.48 -0.41 1.04 16
33 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16
34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16
35 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16
36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16
LS Contribution 341.44 15.07 5.15 5.15
Total: -1.00 -27.37 341.44 -7.43 -34.81
By element:
Atomic # 1 Polarization: 4.38 SS G_CDS: -3.74 Total: 0.63 kcal
Atomic # 6 Polarization: -15.04 SS G_CDS: -3.05 Total: -18.09 kcal
Atomic # 7 Polarization: -33.72 SS G_CDS: 1.45 Total: -32.27 kcal
Atomic # 8 Polarization: -3.65 SS G_CDS: 0.02 Total: -3.63 kcal
Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal
Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal
Atomic # 16 Polarization: 2.11 SS G_CDS: -2.27 Total: -0.16 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -27.37 -7.43 -34.81 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594901720.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.339 kcal
(2) G-P(sol) polarization free energy of solvation -27.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds