Wall clock time and date at job start Tue Mar 31 2020 12:36:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86799 * 119.99762 * 2 1
4 4 H 1.48496 * 109.47139 * 270.00291 * 3 2 1
5 5 H 1.48503 * 109.47006 * 30.00495 * 3 2 1
6 6 H 1.48505 * 109.46884 * 150.00158 * 3 2 1
7 7 C 1.37880 * 120.00102 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99454 * 173.81264 * 7 2 1
9 9 C 1.50696 * 119.99915 * 353.81253 * 7 2 1
10 10 C 1.52992 * 115.55207 * 84.90898 * 9 7 2
11 11 S 1.81006 * 109.47019 * 39.92364 * 10 9 7
12 12 C 1.76200 * 99.99814 * 179.97438 * 11 10 9
13 13 N 1.31283 * 126.28712 * 0.02562 * 12 11 10
14 14 N 1.28660 * 109.44469 * 179.97438 * 13 12 11
15 15 C 1.31078 * 109.41727 * 0.02562 * 14 13 12
16 16 C 1.47738 * 126.30107 * 180.02562 * 15 14 13
17 17 C 1.39620 * 120.12493 * 179.69957 * 16 15 14
18 18 C 1.37906 * 119.87440 * 179.74374 * 17 16 15
19 19 C 1.38587 * 120.12305 * 0.55520 * 18 17 16
20 20 F 1.35098 * 119.87569 * 179.72092 * 19 18 17
21 21 C 1.38592 * 120.24695 * 359.69382 * 19 18 17
22 22 C 1.37900 * 120.12435 * 0.02562 * 21 19 18
23 23 O 1.34684 * 126.28182 * 179.71629 * 12 11 10
24 24 C 1.53004 * 117.51430 * 230.61150 * 9 7 2
25 25 C 1.53000 * 59.99920 * 107.47964 * 24 9 7
26 26 H 0.96996 * 120.00345 * 355.01305 * 1 2 3
27 27 H 1.09007 * 109.47471 * 159.92193 * 10 9 7
28 28 H 1.09002 * 109.47334 * 279.92362 * 10 9 7
29 29 H 1.08004 * 120.06167 * 0.02562 * 17 16 15
30 30 H 1.08000 * 119.93407 * 180.26847 * 18 17 16
31 31 H 1.08006 * 119.93728 * 180.02562 * 21 19 18
32 32 H 1.08006 * 120.06056 * 180.02562 * 22 21 19
33 33 H 1.09002 * 117.49448 * 214.96808 * 24 9 7
34 34 H 1.08999 * 117.50009 * 359.97438 * 24 9 7
35 35 H 1.08994 * 117.49946 * 252.50619 * 25 24 9
36 36 H 1.09004 * 117.51855 * 107.48113 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6526 0.7002
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 3.0798 -1.1966 -0.1013
9 6 1.2577 -2.4954 0.1395
10 6 0.6965 -3.0773 -1.1593
11 16 1.8976 -2.8443 -2.4933
12 6 1.0188 -3.5846 -3.8290
13 7 -0.1750 -4.1274 -3.7677
14 7 -0.5054 -4.5681 -4.9304
15 6 0.4630 -4.3254 -5.7798
16 6 0.4747 -4.6731 -7.2156
17 6 1.5776 -4.3461 -8.0068
18 6 1.5853 -4.6779 -9.3453
19 6 0.4962 -5.3243 -9.9079
20 9 0.5067 -5.6419 -11.2210
21 6 -0.6035 -5.6466 -9.1284
22 6 -0.6196 -5.3249 -7.7876
23 8 1.4460 -3.6924 -5.1017
24 6 1.7488 -3.4815 1.2013
25 6 0.4457 -2.7097 1.4185
26 1 -0.4850 0.8368 0.0730
27 1 0.5027 -4.1418 -1.0268
28 1 -0.2328 -2.5678 -1.4141
29 1 2.4251 -3.8384 -7.5703
30 1 2.4398 -4.4293 -9.9573
31 1 -1.4494 -6.1508 -9.5720
32 1 -1.4769 -5.5769 -7.1810
33 1 1.6721 -4.5449 0.9744
34 1 2.6126 -3.1893 1.7985
35 1 0.4520 -1.9097 2.1587
36 1 -0.4885 -3.2650 1.3344
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594901720.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:03
Heat of formation + Delta-G solvation = 27.511444 kcal
Electronic energy + Delta-G solvation = -22603.285133 eV
Core-core repulsion = 18902.447386 eV
Total energy + Delta-G solvation = -3700.837747 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.074 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-50.02864 -45.12261 -40.07220 -38.49865 -37.32211 -34.04603 -33.75730 -32.36616
-30.73484 -29.50275 -27.44998 -25.67246 -25.29432 -23.72724 -22.92511 -22.86632
-21.30185 -19.74047 -18.86165 -18.56033 -18.28412 -17.81330 -17.47014 -16.80972
-16.69187 -16.61930 -15.75640 -15.43450 -15.40396 -14.88942 -14.69951 -14.33529
-14.14775 -13.84675 -13.82139 -13.61051 -13.49649 -13.16579 -12.98004 -12.83003
-12.55691 -12.36342 -12.13800 -12.02506 -11.76796 -11.75816 -11.50983 -10.77157
-10.50268 -10.29677 -9.99246 -9.85207 -8.68714 -8.14391 -6.27209 -0.80430
-0.36593 0.09699 0.30592 1.18396 1.22007 1.43826 1.47267 1.54473
1.57804 2.43121 2.44929 2.93157 3.08219 3.16260 3.42378 3.59197
3.74536 3.76176 3.89374 4.07612 4.14652 4.17207 4.29461 4.32113
4.61664 4.64887 4.70401 4.82861 4.91127 4.94683 5.02083 5.02258
5.18834 5.21662 5.44508 5.63831 5.64474 5.74261 6.29347 6.79214
6.99479 7.43137 8.93008
Molecular weight = 320.07amu
Principal moments of inertia in cm(-1)
A = 0.022938 B = 0.002677 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.407436 B =10456.910592 C =11069.557344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.039 3.961
3 Si 0.939 3.061
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.265 1.265
7 C -0.507 4.507
8 H 0.063 0.937
9 C 0.018 3.982
10 C -0.050 4.050
11 S 0.114 5.886
12 C 0.130 3.870
13 N -0.324 5.324
14 N -0.289 5.289
15 C 0.196 3.804
16 C -0.048 4.048
17 C -0.055 4.055
18 C -0.145 4.145
19 C 0.119 3.881
20 F -0.134 7.134
21 C -0.145 4.145
22 C -0.042 4.042
23 O -0.208 6.208
24 C -0.178 4.178
25 C -0.149 4.149
26 H 0.262 0.738
27 H 0.082 0.918
28 H 0.068 0.932
29 H 0.151 0.849
30 H 0.171 0.829
31 H 0.172 0.828
32 H 0.150 0.850
33 H 0.094 0.906
34 H 0.087 0.913
35 H 0.068 0.932
36 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.680 -10.034 -17.102 20.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.163 4.163
3 Si 0.765 3.235
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.190 1.190
7 C -0.546 4.546
8 H 0.081 0.919
9 C 0.016 3.984
10 C -0.199 4.199
11 S 0.348 5.652
12 C -0.186 4.186
13 N -0.176 5.176
14 N -0.136 5.136
15 C -0.017 4.017
16 C -0.051 4.051
17 C -0.075 4.075
18 C -0.164 4.164
19 C 0.099 3.901
20 F -0.113 7.113
21 C -0.163 4.163
22 C -0.061 4.061
23 O -0.091 6.091
24 C -0.215 4.215
25 C -0.189 4.189
26 H 0.071 0.929
27 H 0.100 0.900
28 H 0.087 0.913
29 H 0.169 0.831
30 H 0.188 0.812
31 H 0.189 0.811
32 H 0.168 0.832
33 H 0.113 0.887
34 H 0.106 0.894
35 H 0.086 0.914
36 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 2.459 -9.824 -16.673 19.508
hybrid contribution -0.166 0.943 -0.269 0.994
sum 2.293 -8.881 -16.942 19.266
Atomic orbital electron populations
1.70097 1.07115 1.27713 1.48281 1.25572 0.95314 1.01694 0.93753
0.85848 0.79212 0.80133 0.78317 1.20223 1.21180 1.18952 1.20596
0.92972 0.89583 1.51465 0.91932 1.18579 1.00156 0.94747 0.84918
1.23271 0.98711 1.02444 0.95513 1.86455 1.20142 1.65671 0.92885
1.31283 0.96328 1.01905 0.89044 1.74902 1.10790 1.15990 1.15902
1.74290 1.24053 1.19218 0.96011 1.25931 0.83259 0.95928 0.96537
1.17443 0.98805 1.05647 0.83157 1.21276 0.96813 0.96337 0.93052
1.21287 0.99486 1.00489 0.95112 1.18073 0.95871 0.97975 0.78219
1.91537 1.96752 1.90518 1.32480 1.21292 0.99358 1.02878 0.92818
1.21130 0.96689 0.93615 0.94710 1.84987 1.43233 1.61438 1.19400
1.23147 0.97650 0.96457 1.04256 1.22506 0.93856 1.01378 1.01130
0.92916 0.89966 0.91303 0.83114 0.81151 0.81078 0.83184 0.88744
0.89444 0.91385 0.90640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -48.42 12.93 21.45 0.28 -48.14 16
2 C 0.04 2.02 5.39 84.66 0.46 2.47 16
3 Si 0.94 40.94 29.54 68.60 2.03 42.97 16
4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16
6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
7 C -0.51 -25.12 7.54 25.60 0.19 -24.92 16
8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16
9 C 0.02 0.83 1.64 -52.93 -0.09 0.74 16
10 C -0.05 -2.17 5.34 71.98 0.38 -1.78 16
11 S 0.11 4.53 21.16 -56.49 -1.20 3.34 16
12 C 0.13 5.06 8.53 130.32 1.11 6.17 16
13 N -0.32 -13.34 11.62 -171.88 -2.00 -15.34 16
14 N -0.29 -10.71 11.89 -166.14 -1.98 -12.68 16
15 C 0.20 6.24 7.98 87.32 0.70 6.93 16
16 C -0.05 -1.10 5.87 -20.10 -0.12 -1.22 16
17 C -0.05 -0.97 9.72 22.52 0.22 -0.75 16
18 C -0.15 -1.97 10.01 22.27 0.22 -1.75 16
19 C 0.12 1.72 7.30 22.44 0.16 1.89 16
20 F -0.13 -2.04 17.26 44.97 0.78 -1.27 16
21 C -0.15 -2.02 10.01 22.27 0.22 -1.79 16
22 C -0.04 -0.77 9.69 22.52 0.22 -0.56 16
23 O -0.21 -7.23 10.69 -14.87 -0.16 -7.39 16
24 C -0.18 -6.84 9.88 30.60 0.30 -6.54 16
25 C -0.15 -6.44 9.47 30.59 0.29 -6.15 16
26 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16
27 H 0.08 3.25 7.95 -2.39 -0.02 3.23 16
28 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16
29 H 0.15 2.41 7.93 -2.91 -0.02 2.38 16
30 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16
31 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16
32 H 0.15 2.75 7.86 -2.91 -0.02 2.72 16
33 H 0.09 3.15 8.08 -2.39 -0.02 3.13 16
34 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16
35 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16
36 H 0.08 3.08 8.14 -2.38 -0.02 3.07 16
Total: -1.00 -59.30 341.44 3.15 -56.16
By element:
Atomic # 1 Polarization: 8.50 SS G_CDS: 1.12 Total: 9.62 kcal
Atomic # 6 Polarization: -31.53 SS G_CDS: 4.28 Total: -27.25 kcal
Atomic # 7 Polarization: -72.47 SS G_CDS: -3.69 Total: -76.17 kcal
Atomic # 8 Polarization: -7.23 SS G_CDS: -0.16 Total: -7.39 kcal
Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal
Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal
Atomic # 16 Polarization: 4.53 SS G_CDS: -1.20 Total: 3.34 kcal
Total: -59.30 3.15 -56.16 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594901720.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.667 kcal
(2) G-P(sol) polarization free energy of solvation -59.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds