Wall clock time and date at job start Tue Mar 31 2020 12:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29313 * 1 3 3 Si 1.86802 * 120.00318 * 2 1 4 4 H 1.48494 * 109.46927 * 275.53547 * 3 2 1 5 5 H 1.48505 * 109.46704 * 35.53038 * 3 2 1 6 6 H 1.48496 * 109.47379 * 155.53059 * 3 2 1 7 7 C 1.46799 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 338.03944 * 7 2 1 9 9 N 1.33235 * 120.00034 * 158.03074 * 7 2 1 10 10 C 1.46497 * 119.99864 * 323.16663 * 9 7 2 11 11 C 1.50703 * 109.47135 * 264.88669 * 10 9 7 12 12 O 1.20825 * 119.99841 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00102 * 180.02562 * 11 10 9 14 14 C 1.34767 * 119.99814 * 143.16281 * 9 7 2 15 15 O 1.21643 * 120.00187 * 0.02562 * 14 9 7 16 16 C 1.46169 * 119.99958 * 179.97438 * 14 9 7 17 17 C 1.35044 * 119.99803 * 180.02562 * 16 14 9 18 18 C 1.47121 * 119.99936 * 179.72792 * 17 16 14 19 19 C 1.39890 * 120.17055 * 359.72513 * 18 17 16 20 20 C 1.37884 * 119.81892 * 179.74537 * 19 18 17 21 21 C 1.38414 * 120.17078 * 0.53129 * 20 19 18 22 22 N 1.48023 * 119.81882 * 179.74346 * 21 20 19 23 23 O 1.31700 * 119.99742 * 179.97438 * 22 21 20 24 24 O 1.31700 * 119.99608 * 359.97438 * 22 21 20 25 25 C 1.38416 * 120.35879 * 359.72189 * 21 20 19 26 26 C 1.37870 * 120.17652 * 0.02562 * 25 21 20 27 27 H 0.96998 * 119.99896 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47699 * 24.88638 * 10 9 7 29 29 H 1.09001 * 109.46984 * 144.88525 * 10 9 7 30 30 H 0.96699 * 117.00430 * 179.97438 * 13 11 10 31 31 H 1.07993 * 119.99818 * 359.72660 * 16 14 9 32 32 H 1.08000 * 119.99976 * 359.72567 * 17 16 14 33 33 H 1.08000 * 120.09427 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.90954 * 180.25042 * 20 19 18 35 35 H 1.07996 * 119.91093 * 180.02562 * 25 21 20 36 36 H 1.08001 * 120.09242 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.3578 2.1138 -1.3935 5 1 1.4879 2.6161 0.8137 6 1 3.5783 1.4092 0.5799 7 6 2.0271 -1.2713 0.0006 8 1 1.5459 -2.1725 0.3507 9 7 3.2869 -1.3134 -0.4311 10 6 3.7011 -0.4822 -1.5641 11 6 3.6205 -1.2885 -2.8347 12 8 3.2550 -2.4396 -2.7975 13 8 3.9556 -0.7283 -4.0075 14 6 4.1801 -2.1206 0.1747 15 8 3.8361 -2.8110 1.1152 16 6 5.5621 -2.1672 -0.2992 17 6 6.4569 -2.9764 0.3074 18 6 7.8464 -3.0278 -0.1733 19 6 8.2431 -2.2443 -1.2622 20 6 9.5485 -2.2941 -1.7034 21 6 10.4626 -3.1249 -1.0788 22 7 11.8606 -3.1766 -1.5626 23 8 12.7335 -3.9654 -0.9706 24 8 12.2315 -2.4337 -2.5849 25 6 10.0767 -3.9072 -0.0042 26 6 8.7765 -3.8649 0.4523 27 1 -0.4850 0.8400 -0.0004 28 1 3.0423 0.3828 -1.6403 29 1 4.7266 -0.1454 -1.4119 30 1 3.8882 -1.2851 -4.7952 31 1 5.8662 -1.5581 -1.1375 32 1 6.1526 -3.5858 1.1455 33 1 7.5298 -1.5992 -1.7536 34 1 9.8573 -1.6868 -2.5414 35 1 10.7960 -4.5525 0.4780 36 1 8.4769 -4.4756 1.2912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:32 Heat of formation + Delta-G solvation = -28.081068 kcal Electronic energy + Delta-G solvation = -25697.015896 eV Core-core repulsion = 21538.641816 eV Total energy + Delta-G solvation = -4158.374080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.44141 -40.19636 -38.85227 -38.37207 -35.96229 -35.19368 -34.55078 -34.11602 -32.82513 -31.75821 -30.53552 -28.43676 -27.15106 -25.32956 -23.61730 -22.92330 -21.98299 -20.98779 -18.97427 -18.76356 -18.12759 -17.94865 -17.67510 -17.28848 -16.38250 -16.10057 -15.94527 -15.62417 -15.36737 -15.18868 -14.81106 -14.20855 -14.02401 -13.93952 -13.47317 -13.05292 -12.94282 -12.75635 -12.60615 -12.50067 -11.94084 -11.50749 -11.39639 -11.35498 -11.33304 -11.25477 -10.93104 -10.82239 -10.71098 -10.41095 -10.30044 -9.72498 -9.56962 -8.88107 -8.64688 -8.38986 -7.00767 -4.13254 -0.98187 0.50063 0.71953 1.01021 1.80395 2.45080 2.66291 2.87588 2.88711 3.03199 3.21244 3.64635 3.87698 4.02296 4.07638 4.18916 4.40046 4.57027 4.61544 4.64804 4.82232 4.98424 5.15064 5.25271 5.36465 5.41096 5.47396 5.52804 5.62029 5.68171 5.75406 6.17121 6.32747 6.44168 6.63349 6.67403 6.81992 7.86677 8.00851 8.13210 8.50934 8.85520 9.47966 10.05230 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.003073 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.112901 B = 9108.873490 C = 9588.926047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.065 3.935 3 Si 0.867 3.133 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.335 4.335 8 H 0.115 0.885 9 N -0.399 5.399 10 C 0.085 3.915 11 C 0.455 3.545 12 O -0.488 6.488 13 O -0.525 6.525 14 C 0.463 3.537 15 O -0.560 6.560 16 C -0.129 4.129 17 C -0.112 4.112 18 C 0.026 3.974 19 C -0.128 4.128 20 C -0.041 4.041 21 C -0.027 4.027 22 N -0.010 5.010 23 O -0.185 6.185 24 O -0.185 6.185 25 C -0.044 4.044 26 C -0.116 4.116 27 H 0.290 0.710 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.403 0.597 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 1.104 -4.347 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.153 4.153 3 Si 0.691 3.309 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.464 4.464 8 H 0.133 0.867 9 N -0.115 5.115 10 C -0.041 4.041 11 C 0.294 3.706 12 O -0.373 6.373 13 O -0.337 6.337 14 C 0.258 3.742 15 O -0.444 6.444 16 C -0.151 4.151 17 C -0.133 4.133 18 C 0.025 3.975 19 C -0.146 4.146 20 C -0.060 4.060 21 C -0.114 4.114 22 N 0.465 4.535 23 O -0.376 6.376 24 O -0.376 6.376 25 C -0.063 4.063 26 C -0.135 4.135 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.430 0.813 -3.307 11.927 hybrid contribution 0.523 0.627 -0.988 1.282 sum 11.954 1.440 -4.295 12.783 Atomic orbital electron populations 1.68715 1.08134 1.30147 1.35317 1.27185 0.94905 0.98942 0.94285 0.87062 0.82345 0.82333 0.79151 1.18947 1.19714 1.17259 1.20090 0.86444 0.95548 1.44314 0.86746 1.42216 1.10091 1.37563 1.21641 1.21928 1.03528 0.95182 0.83417 1.24469 0.73658 0.87176 0.85309 1.90744 1.41245 1.18593 1.86718 1.84563 1.81390 1.49591 1.18126 1.17773 0.84379 0.86875 0.85222 1.90676 1.79376 1.44377 1.29973 1.23503 0.95380 0.97844 0.98359 1.22062 0.89424 1.00258 1.01518 1.19656 0.94019 0.91686 0.92099 1.21466 0.94989 1.00818 0.97369 1.20998 0.91878 0.94804 0.98363 1.20403 0.79733 1.08295 1.02956 1.50472 1.04108 0.98830 1.00128 1.96261 1.47548 1.35470 1.58331 1.96264 1.85794 1.39751 1.15757 1.21017 0.97386 0.95495 0.92450 1.21404 0.91015 0.99865 1.01205 0.89756 0.86905 0.87359 0.73808 0.86761 0.83764 0.83332 0.82797 0.82796 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 13.88 56.00 0.78 -19.09 16 2 C 0.07 1.57 5.44 -15.15 -0.08 1.48 16 3 Si 0.87 16.75 25.16 -169.99 -4.28 12.48 16 4 H -0.26 -4.60 6.78 56.52 0.38 -4.22 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.25 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.34 -8.63 9.58 -13.48 -0.13 -8.76 16 8 H 0.12 3.40 7.84 -52.49 -0.41 2.99 16 9 N -0.40 -8.82 1.71 -116.21 -0.20 -9.01 16 10 C 0.08 1.48 4.30 -5.19 -0.02 1.45 16 11 C 0.45 7.64 8.16 36.01 0.29 7.94 16 12 O -0.49 -10.09 17.07 -18.75 -0.32 -10.41 16 13 O -0.52 -6.47 13.42 -39.24 -0.53 -6.99 16 14 C 0.46 10.04 7.36 -13.08 -0.10 9.94 16 15 O -0.56 -14.28 16.04 5.24 0.08 -14.20 16 16 C -0.13 -2.04 8.51 -37.54 -0.32 -2.36 16 17 C -0.11 -1.53 9.46 -37.11 -0.35 -1.88 16 18 C 0.03 0.29 5.87 -105.06 -0.62 -0.33 16 19 C -0.13 -1.25 9.41 -39.09 -0.37 -1.62 16 20 C -0.04 -0.41 9.56 -39.65 -0.38 -0.79 16 21 C -0.03 -0.30 6.89 -79.81 -0.55 -0.85 16 22 N -0.01 -0.14 4.98 34.03 0.17 0.03 16 23 O -0.19 -2.70 19.14 -31.57 -0.60 -3.30 16 24 O -0.18 -2.71 19.13 -31.57 -0.60 -3.31 16 25 C -0.04 -0.43 9.56 -39.65 -0.38 -0.80 16 26 C -0.12 -1.07 9.80 -39.10 -0.38 -1.46 16 27 H 0.29 6.47 8.26 -40.82 -0.34 6.14 16 28 H 0.11 2.00 3.48 -51.93 -0.18 1.82 16 29 H 0.11 1.42 6.40 -51.93 -0.33 1.09 16 30 H 0.40 3.22 9.10 45.56 0.41 3.64 16 31 H 0.11 1.43 4.26 -52.49 -0.22 1.20 16 32 H 0.14 2.07 7.52 -52.49 -0.39 1.68 16 33 H 0.15 1.21 6.17 -52.49 -0.32 0.89 16 34 H 0.15 1.31 7.56 -52.49 -0.40 0.91 16 35 H 0.15 1.25 7.56 -52.49 -0.40 0.86 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -32.61 331.66 -5.71 -38.31 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -1.82 Total: 8.53 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.38 Total: 1.97 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: 0.75 Total: -28.08 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.97 Total: -38.20 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -4.28 Total: 12.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.61 -5.71 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.232 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds