Wall clock time and date at job start Tue Mar 31 2020 12:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29313 * 1 3 3 Si 1.86802 * 120.00318 * 2 1 4 4 H 1.48494 * 109.46927 * 275.53547 * 3 2 1 5 5 H 1.48505 * 109.46704 * 35.53038 * 3 2 1 6 6 H 1.48496 * 109.47379 * 155.53059 * 3 2 1 7 7 C 1.46799 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 338.03944 * 7 2 1 9 9 N 1.33235 * 120.00034 * 158.03074 * 7 2 1 10 10 C 1.46497 * 119.99864 * 323.16663 * 9 7 2 11 11 C 1.50703 * 109.47135 * 264.88669 * 10 9 7 12 12 O 1.20825 * 119.99841 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00102 * 180.02562 * 11 10 9 14 14 C 1.34767 * 119.99814 * 143.16281 * 9 7 2 15 15 O 1.21643 * 120.00187 * 0.02562 * 14 9 7 16 16 C 1.46169 * 119.99958 * 179.97438 * 14 9 7 17 17 C 1.35044 * 119.99803 * 180.02562 * 16 14 9 18 18 C 1.47121 * 119.99936 * 179.72792 * 17 16 14 19 19 C 1.39890 * 120.17055 * 359.72513 * 18 17 16 20 20 C 1.37884 * 119.81892 * 179.74537 * 19 18 17 21 21 C 1.38414 * 120.17078 * 0.53129 * 20 19 18 22 22 N 1.48023 * 119.81882 * 179.74346 * 21 20 19 23 23 O 1.31700 * 119.99742 * 179.97438 * 22 21 20 24 24 O 1.31700 * 119.99608 * 359.97438 * 22 21 20 25 25 C 1.38416 * 120.35879 * 359.72189 * 21 20 19 26 26 C 1.37870 * 120.17652 * 0.02562 * 25 21 20 27 27 H 0.96998 * 119.99896 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47699 * 24.88638 * 10 9 7 29 29 H 1.09001 * 109.46984 * 144.88525 * 10 9 7 30 30 H 0.96699 * 117.00430 * 179.97438 * 13 11 10 31 31 H 1.07993 * 119.99818 * 359.72660 * 16 14 9 32 32 H 1.08000 * 119.99976 * 359.72567 * 17 16 14 33 33 H 1.08000 * 120.09427 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.90954 * 180.25042 * 20 19 18 35 35 H 1.07996 * 119.91093 * 180.02562 * 25 21 20 36 36 H 1.08001 * 120.09242 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.3578 2.1138 -1.3935 5 1 1.4879 2.6161 0.8137 6 1 3.5783 1.4092 0.5799 7 6 2.0271 -1.2713 0.0006 8 1 1.5459 -2.1725 0.3507 9 7 3.2869 -1.3134 -0.4311 10 6 3.7011 -0.4822 -1.5641 11 6 3.6205 -1.2885 -2.8347 12 8 3.2550 -2.4396 -2.7975 13 8 3.9556 -0.7283 -4.0075 14 6 4.1801 -2.1206 0.1747 15 8 3.8361 -2.8110 1.1152 16 6 5.5621 -2.1672 -0.2992 17 6 6.4569 -2.9764 0.3074 18 6 7.8464 -3.0278 -0.1733 19 6 8.2431 -2.2443 -1.2622 20 6 9.5485 -2.2941 -1.7034 21 6 10.4626 -3.1249 -1.0788 22 7 11.8606 -3.1766 -1.5626 23 8 12.7335 -3.9654 -0.9706 24 8 12.2315 -2.4337 -2.5849 25 6 10.0767 -3.9072 -0.0042 26 6 8.7765 -3.8649 0.4523 27 1 -0.4850 0.8400 -0.0004 28 1 3.0423 0.3828 -1.6403 29 1 4.7266 -0.1454 -1.4119 30 1 3.8882 -1.2851 -4.7952 31 1 5.8662 -1.5581 -1.1375 32 1 6.1526 -3.5858 1.1455 33 1 7.5298 -1.5992 -1.7536 34 1 9.8573 -1.6868 -2.5414 35 1 10.7960 -4.5525 0.4780 36 1 8.4769 -4.4756 1.2912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:31 Heat of formation + Delta-G solvation = -51.306369 kcal Electronic energy + Delta-G solvation = -25698.023021 eV Core-core repulsion = 21538.641816 eV Total energy + Delta-G solvation = -4159.381204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67489 -41.24912 -40.28766 -39.43172 -37.26965 -36.69044 -35.62084 -35.31573 -34.52617 -32.57813 -31.63644 -29.84167 -28.36661 -26.74803 -24.55357 -23.99988 -23.25368 -22.18653 -20.13028 -19.88841 -19.32969 -19.22593 -19.10131 -18.63444 -17.70963 -17.26764 -17.11102 -16.67652 -16.54980 -16.39052 -15.80377 -15.58813 -15.53704 -14.83559 -14.56274 -14.43493 -14.33243 -14.11759 -13.87652 -13.60062 -13.06214 -12.99125 -12.61066 -12.57818 -12.39388 -12.32709 -12.25118 -11.97211 -11.93082 -11.78952 -11.69943 -11.18230 -10.60180 -10.48055 -10.09883 -9.73490 -8.71661 -6.03538 -2.00905 -0.51790 -0.04955 0.03102 0.70018 1.16439 1.18806 1.34499 1.46239 1.83766 2.07493 2.20586 2.45340 2.60781 2.99007 3.25689 3.29838 3.40514 3.69575 3.75498 3.79490 3.94695 4.03022 4.12633 4.17765 4.44333 4.56763 4.61793 4.67017 4.79293 4.81811 5.06609 5.29447 5.31169 5.36482 5.54479 5.61673 6.04738 6.28006 6.81613 7.00021 7.16522 7.81623 8.41490 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.003073 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.112901 B = 9108.873490 C = 9588.926047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.222 1.222 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.389 4.389 8 H 0.037 0.963 9 N -0.415 5.415 10 C 0.079 3.921 11 C 0.467 3.533 12 O -0.538 6.538 13 O -0.502 6.502 14 C 0.464 3.536 15 O -0.615 6.615 16 C -0.157 4.157 17 C -0.065 4.065 18 C 0.011 3.989 19 C -0.111 4.111 20 C -0.039 4.039 21 C -0.030 4.030 22 N -0.010 5.010 23 O -0.202 6.202 24 O -0.198 6.198 25 C -0.042 4.042 26 C -0.098 4.098 27 H 0.296 0.704 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.427 0.573 31 H 0.157 0.843 32 H 0.134 0.866 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.006 2.790 -5.996 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.190 4.190 3 Si 0.754 3.246 4 H -0.146 1.146 5 H -0.201 1.201 6 H -0.158 1.158 7 C -0.518 4.518 8 H 0.055 0.945 9 N -0.131 5.131 10 C -0.045 4.045 11 C 0.308 3.692 12 O -0.427 6.427 13 O -0.315 6.315 14 C 0.259 3.741 15 O -0.503 6.503 16 C -0.178 4.178 17 C -0.085 4.085 18 C 0.011 3.989 19 C -0.129 4.129 20 C -0.058 4.058 21 C -0.117 4.117 22 N 0.462 4.538 23 O -0.391 6.391 24 O -0.388 6.388 25 C -0.061 4.061 26 C -0.116 4.116 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.179 0.821 30 H 0.288 0.712 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.191 0.809 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.937 2.506 -5.016 16.895 hybrid contribution -0.370 -0.228 -0.491 0.656 sum 15.567 2.278 -5.507 16.669 Atomic orbital electron populations 1.68817 1.10165 1.31512 1.38271 1.28003 0.95575 1.02463 0.92917 0.86034 0.80936 0.76287 0.81329 1.14639 1.20058 1.15783 1.19332 0.88593 0.94277 1.49595 0.94488 1.42042 1.08682 1.38850 1.23557 1.22071 1.06185 0.94092 0.82176 1.24219 0.72515 0.86144 0.86327 1.90747 1.43611 1.20796 1.87511 1.84481 1.80140 1.49170 1.17722 1.18812 0.86559 0.84714 0.84025 1.90623 1.81099 1.46203 1.32327 1.23290 0.91859 1.01292 1.01333 1.22241 0.90402 0.96851 0.99027 1.19574 0.92601 0.93388 0.93377 1.21726 0.95161 0.99820 0.96180 1.21226 0.91478 0.94449 0.98616 1.20821 0.78687 1.08767 1.03392 1.50792 1.04919 0.98300 0.99789 1.96264 1.48370 1.35935 1.58531 1.96263 1.86237 1.40052 1.16273 1.21242 0.97774 0.95237 0.91884 1.21674 0.90273 0.98675 1.00993 0.89198 0.87003 0.82114 0.71153 0.82597 0.84783 0.80879 0.81031 0.81200 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.40 13.88 23.26 0.32 -46.08 16 2 C 0.02 1.19 5.44 87.30 0.48 1.66 16 3 Si 0.94 34.21 25.16 68.60 1.73 35.94 16 4 H -0.22 -6.65 6.78 99.48 0.67 -5.97 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.24 -7.96 7.11 99.48 0.71 -7.26 16 7 C -0.39 -21.89 9.58 86.72 0.83 -21.06 16 8 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 9 N -0.41 -18.88 1.71 -639.83 -1.10 -19.98 16 10 C 0.08 2.58 4.30 85.63 0.37 2.95 16 11 C 0.47 14.76 8.16 71.24 0.58 15.34 16 12 O -0.54 -22.32 17.07 21.97 0.38 -21.95 16 13 O -0.50 -10.33 13.42 -51.37 -0.69 -11.02 16 14 C 0.46 20.57 7.36 86.30 0.63 21.20 16 15 O -0.62 -33.39 16.04 -4.17 -0.07 -33.46 16 16 C -0.16 -4.54 8.51 23.59 0.20 -4.34 16 17 C -0.06 -1.56 9.46 23.87 0.23 -1.33 16 18 C 0.01 0.19 5.87 -20.15 -0.12 0.07 16 19 C -0.11 -1.52 9.41 22.59 0.21 -1.30 16 20 C -0.04 -0.56 9.56 22.23 0.21 -0.35 16 21 C -0.03 -0.55 6.89 36.46 0.25 -0.29 16 22 N -0.01 -0.25 4.98 -46.26 -0.23 -0.48 16 23 O -0.20 -5.37 19.14 3.51 0.07 -5.30 16 24 O -0.20 -5.23 19.13 3.51 0.07 -5.16 16 25 C -0.04 -0.62 9.56 22.22 0.21 -0.41 16 26 C -0.10 -1.33 9.80 22.58 0.22 -1.11 16 27 H 0.30 14.16 8.26 -92.71 -0.77 13.40 16 28 H 0.11 3.69 3.48 -2.39 -0.01 3.68 16 29 H 0.16 3.39 6.40 -2.39 -0.02 3.37 16 30 H 0.43 5.13 9.10 -74.06 -0.67 4.45 16 31 H 0.16 3.07 4.26 -2.91 -0.01 3.06 16 32 H 0.13 3.59 7.52 -2.91 -0.02 3.57 16 33 H 0.17 1.59 6.17 -2.91 -0.02 1.57 16 34 H 0.17 1.98 7.56 -2.91 -0.02 1.96 16 35 H 0.17 2.02 7.56 -2.91 -0.02 2.00 16 36 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -83.14 331.66 5.27 -77.87 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.48 Total: 18.60 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.31 Total: 11.03 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.00 Total: -66.55 kcal Atomic # 8 Polarization: -76.64 SS G_CDS: -0.25 Total: -76.89 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 1.73 Total: 35.94 kcal Total: -83.14 5.27 -77.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.567 kcal (2) G-P(sol) polarization free energy of solvation -83.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds