Wall clock time and date at job start Tue Mar 31 2020 12:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48490 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46990 * 300.00172 * 3 2 1 6 6 H 1.48497 * 109.46944 * 59.99708 * 3 2 1 7 7 C 1.37879 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00386 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99575 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46857 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46674 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.46882 * 179.97438 * 11 10 9 13 13 C 1.34738 * 117.00073 * 179.97438 * 12 11 10 14 14 O 1.21490 * 119.99949 * 0.02562 * 13 12 11 15 15 C 1.47565 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.39718 * 120.17078 * 0.02562 * 15 13 12 17 17 C 1.37840 * 119.87105 * 179.97438 * 16 15 13 18 18 C 1.50699 * 119.88643 * 180.02562 * 17 16 15 19 19 F 1.39899 * 109.47089 * 89.99809 * 18 17 16 20 20 F 1.39897 * 109.46976 * 209.99819 * 18 17 16 21 21 F 1.39895 * 109.47411 * 329.99714 * 18 17 16 22 22 C 1.38476 * 120.22398 * 359.72121 * 17 16 15 23 23 C 1.38200 * 120.35135 * 0.56171 * 22 17 16 24 24 C 1.38322 * 120.11938 * 359.43820 * 23 22 17 25 25 F 1.35103 * 120.10939 * 180.26028 * 24 23 22 26 26 H 0.96989 * 120.00335 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47216 * 59.99975 * 9 7 2 28 28 H 1.09002 * 109.47170 * 300.00339 * 9 7 2 29 29 H 1.08997 * 109.47401 * 59.99877 * 10 9 7 30 30 H 1.08994 * 109.47247 * 299.99369 * 10 9 7 31 31 H 1.09000 * 109.47666 * 59.99981 * 11 10 9 32 32 H 1.08997 * 109.47415 * 299.99679 * 11 10 9 33 33 H 1.08002 * 120.06790 * 359.95840 * 16 15 13 34 34 H 1.08001 * 119.82575 * 180.29393 * 22 17 16 35 35 H 1.08002 * 119.94282 * 179.72371 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 8 2.4241 -6.0906 -0.0005 13 6 1.9092 -7.3357 0.0005 14 8 0.7048 -7.4950 0.0014 15 6 2.8082 -8.5059 0.0005 16 6 4.1938 -8.3269 0.0001 17 6 5.0278 -9.4244 0.0006 18 6 6.5224 -9.2317 0.0007 19 9 6.9848 -9.1715 1.3197 20 9 7.1310 -10.3053 -0.6582 21 9 6.8390 -8.0395 -0.6593 22 6 4.4969 -10.7033 0.0075 23 6 3.1278 -10.8911 0.0021 24 6 2.2775 -9.8001 0.0016 25 9 0.9390 -9.9839 0.0016 26 1 -0.4850 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8722 -3.6042 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.8535 -5.0451 -0.8896 32 1 0.8542 -5.0446 0.8903 33 1 4.6107 -7.3306 -0.0010 34 1 5.1564 -11.5586 0.0127 35 1 2.7209 -11.8915 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761187712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:19 Heat of formation + Delta-G solvation = -268.640607 kcal Electronic energy + Delta-G solvation = -25812.981235 eV Core-core repulsion = 21082.399009 eV Total energy + Delta-G solvation = -4730.582226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.54591 -49.45594 -48.06420 -47.99091 -40.61826 -39.30688 -36.56622 -34.06048 -32.48547 -32.23820 -31.59208 -27.28098 -26.33318 -25.11397 -23.52473 -22.65250 -21.20459 -20.41571 -19.01071 -18.86862 -18.82622 -18.08032 -17.51838 -16.75915 -16.63362 -16.51633 -15.94042 -15.91185 -15.03335 -14.89931 -14.68730 -14.48724 -14.42049 -14.25812 -14.14602 -14.13580 -14.13261 -13.81239 -13.34609 -13.05998 -12.47760 -12.22384 -12.21688 -12.07299 -11.91054 -11.01476 -10.75986 -10.70180 -10.50915 -10.48729 -9.93674 -9.77867 -9.65453 -9.56205 -9.17977 -8.41274 -6.05736 -4.08913 -0.12134 0.25706 2.06636 2.16732 2.51664 2.91433 3.21266 3.29002 3.36598 3.40800 3.46408 3.52213 3.98488 3.99438 4.14192 4.40868 4.45154 4.57668 4.81707 5.07700 5.23251 5.28101 5.30438 5.40595 5.50517 5.52790 5.89050 5.94272 6.31969 6.48204 6.72716 6.92623 7.57277 7.67431 7.67469 7.92403 8.32933 8.97581 9.55708 11.05725 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.002742 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.301014 B =10209.193824 C =11903.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.350 6.350 13 C 0.503 3.497 14 O -0.490 6.490 15 C -0.158 4.158 16 C 0.017 3.983 17 C -0.212 4.212 18 C 0.514 3.486 19 F -0.173 7.173 20 F -0.176 7.176 21 F -0.170 7.170 22 C -0.010 4.010 23 C -0.168 4.168 24 C 0.196 3.804 25 F -0.103 7.103 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 -25.991 0.013 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.267 6.267 13 C 0.346 3.654 14 O -0.379 6.379 15 C -0.160 4.160 16 C -0.001 4.001 17 C -0.214 4.214 18 C 0.460 3.540 19 F -0.154 7.154 20 F -0.157 7.157 21 F -0.151 7.151 22 C -0.028 4.028 23 C -0.186 4.186 24 C 0.176 3.824 25 F -0.080 7.080 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.074 -25.858 0.013 28.129 hybrid contribution 0.214 0.980 0.001 1.003 sum 11.288 -24.878 0.014 27.319 Atomic orbital electron populations 1.69968 1.06096 1.26705 1.50555 1.25033 0.94877 0.99400 0.95164 0.86489 0.80106 0.83531 0.77616 1.19637 1.20967 1.20963 1.21200 0.93173 0.90618 1.50982 0.92330 1.19060 0.93823 0.90699 0.97755 1.21792 1.00016 0.90753 1.02128 1.23625 0.91115 0.83037 1.02531 1.86525 1.42571 1.14459 1.83148 1.20554 0.86761 0.83889 0.74214 1.90918 1.15460 1.86843 1.44671 1.19258 0.93589 0.90969 1.12221 1.21251 0.90879 1.00050 0.87930 1.19982 0.91855 0.95889 1.13678 1.18042 0.87652 0.74191 0.74103 1.93257 1.90346 1.96035 1.35764 1.93200 1.85278 1.56043 1.81170 1.93245 1.93995 1.46934 1.80962 1.21035 0.95018 0.96160 0.90629 1.21118 0.92629 0.99037 1.05850 1.17895 0.78364 0.92320 0.93813 1.91666 1.28714 1.95733 1.91914 0.92914 0.96170 0.96182 0.91999 0.91982 0.91156 0.91151 0.81763 0.82902 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 11 C 0.07 1.24 5.48 37.16 0.20 1.44 16 12 O -0.35 -5.58 9.47 -40.59 -0.38 -5.97 16 13 C 0.50 7.63 7.89 34.53 0.27 7.90 16 14 O -0.49 -8.80 15.13 -19.26 -0.29 -9.09 16 15 C -0.16 -1.81 5.88 -104.93 -0.62 -2.43 16 16 C 0.02 0.16 8.96 -39.17 -0.35 -0.19 16 17 C -0.21 -1.64 5.45 -104.68 -0.57 -2.21 16 18 C 0.51 4.15 3.36 36.01 0.12 4.27 16 19 F -0.17 -1.52 17.30 2.25 0.04 -1.48 16 20 F -0.18 -1.33 16.46 2.25 0.04 -1.30 16 21 F -0.17 -1.60 16.45 2.25 0.04 -1.56 16 22 C -0.01 -0.06 9.39 -39.51 -0.37 -0.43 16 23 C -0.17 -1.05 10.01 -39.56 -0.40 -1.45 16 24 C 0.20 1.96 7.29 -38.94 -0.28 1.68 16 25 F -0.10 -1.25 15.55 2.25 0.04 -1.21 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.16 1.51 7.15 -52.49 -0.38 1.14 16 34 H 0.15 0.45 7.60 -52.49 -0.40 0.05 16 35 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -31.62 330.98 -5.79 -37.41 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -3.27 Total: -5.65 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.69 Total: -6.63 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.68 Total: -15.06 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.15 Total: -5.55 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.62 -5.79 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761187712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.230 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds