Wall clock time and date at job start Tue Mar 31 2020 12:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48490 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46990 * 300.00172 * 3 2 1 6 6 H 1.48497 * 109.46944 * 59.99708 * 3 2 1 7 7 C 1.37879 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00386 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99575 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46857 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46674 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.46882 * 179.97438 * 11 10 9 13 13 C 1.34738 * 117.00073 * 179.97438 * 12 11 10 14 14 O 1.21490 * 119.99949 * 0.02562 * 13 12 11 15 15 C 1.47565 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.39718 * 120.17078 * 0.02562 * 15 13 12 17 17 C 1.37840 * 119.87105 * 179.97438 * 16 15 13 18 18 C 1.50699 * 119.88643 * 180.02562 * 17 16 15 19 19 F 1.39899 * 109.47089 * 89.99809 * 18 17 16 20 20 F 1.39897 * 109.46976 * 209.99819 * 18 17 16 21 21 F 1.39895 * 109.47411 * 329.99714 * 18 17 16 22 22 C 1.38476 * 120.22398 * 359.72121 * 17 16 15 23 23 C 1.38200 * 120.35135 * 0.56171 * 22 17 16 24 24 C 1.38322 * 120.11938 * 359.43820 * 23 22 17 25 25 F 1.35103 * 120.10939 * 180.26028 * 24 23 22 26 26 H 0.96989 * 120.00335 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47216 * 59.99975 * 9 7 2 28 28 H 1.09002 * 109.47170 * 300.00339 * 9 7 2 29 29 H 1.08997 * 109.47401 * 59.99877 * 10 9 7 30 30 H 1.08994 * 109.47247 * 299.99369 * 10 9 7 31 31 H 1.09000 * 109.47666 * 59.99981 * 11 10 9 32 32 H 1.08997 * 109.47415 * 299.99679 * 11 10 9 33 33 H 1.08002 * 120.06790 * 359.95840 * 16 15 13 34 34 H 1.08001 * 119.82575 * 180.29393 * 22 17 16 35 35 H 1.08002 * 119.94282 * 179.72371 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 8 2.4241 -6.0906 -0.0005 13 6 1.9092 -7.3357 0.0005 14 8 0.7048 -7.4950 0.0014 15 6 2.8082 -8.5059 0.0005 16 6 4.1938 -8.3269 0.0001 17 6 5.0278 -9.4244 0.0006 18 6 6.5224 -9.2317 0.0007 19 9 6.9848 -9.1715 1.3197 20 9 7.1310 -10.3053 -0.6582 21 9 6.8390 -8.0395 -0.6593 22 6 4.4969 -10.7033 0.0075 23 6 3.1278 -10.8911 0.0021 24 6 2.2775 -9.8001 0.0016 25 9 0.9390 -9.9839 0.0016 26 1 -0.4850 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8722 -3.6042 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.8535 -5.0451 -0.8896 32 1 0.8542 -5.0446 0.8903 33 1 4.6107 -7.3306 -0.0010 34 1 5.1564 -11.5586 0.0127 35 1 2.7209 -11.8915 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761187712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:18 Heat of formation + Delta-G solvation = -284.957237 kcal Electronic energy + Delta-G solvation = -25813.688777 eV Core-core repulsion = 21082.399009 eV Total energy + Delta-G solvation = -4731.289768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.19435 -50.27631 -48.70714 -48.65274 -41.74531 -40.13135 -37.92331 -35.97090 -33.83313 -33.05353 -32.81812 -29.09681 -26.99729 -26.24980 -24.95743 -23.60535 -22.25595 -22.13438 -19.85524 -19.53300 -19.50581 -18.85114 -18.72830 -18.34177 -17.87360 -17.58062 -17.10605 -16.89459 -16.48840 -15.72600 -15.67754 -15.52427 -15.37592 -15.08911 -14.91387 -14.80534 -14.78055 -14.69055 -14.52400 -14.13383 -14.03306 -13.80580 -13.62769 -13.17203 -12.86859 -12.70466 -12.52183 -12.41621 -12.14965 -11.92403 -11.50019 -11.47237 -11.24057 -10.59742 -10.58621 -10.35441 -8.22589 -6.34038 -0.86421 -0.39821 1.13009 1.32466 1.41499 1.42095 1.54025 1.55712 2.08657 2.40770 2.56586 2.76357 2.86890 3.11582 3.28334 3.34702 3.42326 3.73561 3.82365 3.96105 4.00273 4.16711 4.36462 4.48454 4.56387 4.68505 4.74461 4.77199 4.86295 5.04674 5.24445 5.30523 5.48193 5.62321 5.79384 6.17759 6.43424 6.82166 7.35690 8.89858 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.002742 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.301014 B =10209.193824 C =11903.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.079 3.921 12 O -0.347 6.347 13 C 0.501 3.499 14 O -0.526 6.526 15 C -0.180 4.180 16 C 0.016 3.984 17 C -0.211 4.211 18 C 0.519 3.481 19 F -0.176 7.176 20 F -0.169 7.169 21 F -0.180 7.180 22 C 0.012 3.988 23 C -0.146 4.146 24 C 0.180 3.820 25 F -0.121 7.121 26 H 0.264 0.736 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.193 0.807 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 -27.806 0.005 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.006 3.994 12 O -0.264 6.264 13 C 0.347 3.653 14 O -0.417 6.417 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.212 4.212 18 C 0.464 3.536 19 F -0.158 7.158 20 F -0.150 7.150 21 F -0.161 7.161 22 C -0.006 4.006 23 C -0.164 4.164 24 C 0.160 3.840 25 F -0.099 7.099 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.210 0.790 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.488 -27.691 0.005 30.802 hybrid contribution -0.471 1.414 0.002 1.490 sum 13.017 -26.277 0.008 29.325 Atomic orbital electron populations 1.70101 1.07884 1.27880 1.51537 1.26010 0.95780 1.03530 0.94615 0.85341 0.79157 0.78483 0.77727 1.18307 1.20438 1.20426 1.21652 0.93786 0.91810 1.50729 0.91586 1.18940 0.94269 0.92443 0.95526 1.21474 0.98780 0.90053 1.02815 1.23242 0.90874 0.83150 1.02180 1.86501 1.41733 1.14705 1.83428 1.21249 0.87064 0.84125 0.72847 1.90895 1.17087 1.87090 1.46635 1.19073 0.93716 0.89930 1.15534 1.21177 0.90162 1.00754 0.88128 1.20028 0.91414 0.96313 1.13479 1.18003 0.87701 0.73993 0.73856 1.93254 1.90415 1.96044 1.36065 1.93215 1.85199 1.55600 1.81016 1.93230 1.94087 1.47660 1.81157 1.21511 0.95212 0.96346 0.87493 1.21492 0.92197 0.99326 1.03373 1.18269 0.78085 0.92806 0.94794 1.91621 1.30232 1.95781 1.92257 0.92681 0.98440 0.98446 0.91223 0.91220 0.91610 0.91597 0.82148 0.79028 0.78720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.54 7.74 -2.92 -0.02 3.51 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.83 5.53 30.59 0.17 -3.66 16 11 C 0.08 2.91 5.48 71.98 0.39 3.30 16 12 O -0.35 -11.30 9.47 -56.48 -0.54 -11.84 16 13 C 0.50 15.67 7.89 70.28 0.55 16.22 16 14 O -0.53 -19.69 15.13 19.87 0.30 -19.39 16 15 C -0.18 -4.07 5.88 -20.06 -0.12 -4.19 16 16 C 0.02 0.29 8.96 22.53 0.20 0.49 16 17 C -0.21 -2.69 5.45 -19.90 -0.11 -2.80 16 18 C 0.52 7.11 3.36 71.24 0.24 7.35 16 19 F -0.18 -2.71 17.30 44.97 0.78 -1.93 16 20 F -0.17 -2.02 16.46 44.97 0.74 -1.28 16 21 F -0.18 -3.12 16.45 44.97 0.74 -2.38 16 22 C 0.01 0.09 9.39 22.32 0.21 0.30 16 23 C -0.15 -1.29 10.01 22.28 0.22 -1.06 16 24 C 0.18 3.37 7.29 22.69 0.17 3.54 16 25 F -0.12 -2.93 15.55 44.97 0.70 -2.23 16 26 H 0.26 15.06 8.31 -92.72 -0.77 14.29 16 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.16 2.90 7.15 -2.91 -0.02 2.88 16 34 H 0.19 -0.03 7.60 -2.91 -0.02 -0.05 16 35 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -70.33 330.98 8.95 -61.37 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.14 Total: -2.81 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 2.77 Total: -8.97 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.23 Total: -31.23 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.96 Total: -7.81 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.33 8.95 -61.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761187712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.582 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds