Wall clock time and date at job start Tue Mar 31 2020 12:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.20824 * 120.00570 * 359.97438 * 16 15 14 18 18 O 1.34234 * 119.99720 * 180.02562 * 16 15 14 19 19 C 1.45197 * 116.99835 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47332 * 179.97438 * 19 18 16 21 21 H 1.08994 * 109.47274 * 295.00001 * 20 19 18 22 22 F 1.39896 * 109.47372 * 174.99561 * 20 19 18 23 23 C 1.53004 * 109.46871 * 54.99549 * 20 19 18 24 24 F 1.39906 * 109.47069 * 60.00290 * 23 20 19 25 25 F 1.39898 * 109.46873 * 179.97438 * 23 20 19 26 26 F 1.39895 * 109.47450 * 300.00425 * 23 20 19 27 27 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 28 28 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 33 33 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 34 34 H 1.09002 * 109.47319 * 299.99535 * 19 18 16 35 35 H 1.09001 * 109.47695 * 59.99696 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1038 -1.5480 -2.7298 18 8 3.2654 -3.4123 -3.5695 19 6 3.3034 -2.7989 -4.8850 20 6 2.7700 -3.7870 -5.9242 21 1 3.4392 -4.6451 -5.9867 22 9 2.6994 -3.1587 -7.1721 23 6 1.3742 -4.2580 -5.5106 24 9 0.5152 -3.1566 -5.4304 25 9 0.8862 -5.1611 -6.4611 26 9 1.4447 -4.8862 -4.2627 27 1 -0.4850 -0.8375 -0.0665 28 1 3.2394 0.4608 1.6895 29 1 5.6165 0.3989 2.3039 30 1 7.1007 -1.3106 1.3399 31 1 6.2217 -2.9744 -0.2447 32 1 4.3205 -4.1337 -1.1120 33 1 2.6739 -3.5044 -0.8653 34 1 2.6848 -1.9014 -4.8855 35 1 4.3310 -2.5319 -5.1320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800195524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:12 Heat of formation + Delta-G solvation = -274.797836 kcal Electronic energy + Delta-G solvation = -27427.551994 eV Core-core repulsion = 22696.702771 eV Total energy + Delta-G solvation = -4730.849223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.39972 -48.54859 -47.83217 -47.58862 -40.17490 -38.03201 -36.26259 -33.74311 -32.49196 -31.84495 -30.24582 -27.60546 -26.24869 -24.64248 -22.69183 -21.67423 -21.11713 -19.50632 -19.02751 -18.71742 -18.42202 -18.16775 -17.36160 -16.62529 -16.37986 -15.90048 -15.48510 -14.87368 -14.62050 -14.57188 -14.53536 -14.36572 -14.23861 -14.15942 -13.86376 -13.84693 -13.72078 -13.22694 -12.81098 -12.54756 -12.25983 -12.04397 -11.85028 -11.61519 -11.39950 -11.33726 -10.86430 -10.61828 -10.38714 -10.24945 -9.98170 -9.76961 -9.34786 -9.03475 -7.74588 -7.71378 -7.25384 -4.59198 2.18114 2.25494 2.67856 2.73507 2.76239 3.21237 3.30713 3.38951 3.46408 3.59992 3.74940 4.01075 4.03744 4.31573 4.52924 4.61930 4.93987 5.10161 5.30245 5.49074 5.68418 5.75552 5.98329 6.10023 6.14619 6.42013 6.62275 6.67031 6.97092 7.27416 7.44449 7.58755 7.63298 7.76640 7.91847 8.21342 8.32762 8.51294 8.72457 10.00882 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.004378 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.035782 B = 6393.677555 C = 7206.243061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.046 3.954 3 Si 1.069 2.931 4 H -0.277 1.277 5 H -0.258 1.258 6 H -0.291 1.291 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.117 3.883 10 C -0.243 4.243 11 C -0.071 4.071 12 C -0.247 4.247 13 C -0.061 4.061 14 C -0.191 4.191 15 C -0.037 4.037 16 C 0.467 3.533 17 O -0.481 6.481 18 O -0.358 6.358 19 C 0.033 3.967 20 C 0.063 3.937 21 H 0.141 0.859 22 F -0.167 7.167 23 C 0.434 3.566 24 F -0.171 7.171 25 F -0.178 7.178 26 F -0.153 7.153 27 H 0.285 0.715 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 -8.582 -9.933 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.204 1.204 5 H -0.183 1.183 6 H -0.219 1.219 7 C -0.544 4.544 8 H 0.095 0.905 9 C 0.114 3.886 10 C -0.262 4.262 11 C -0.090 4.090 12 C -0.266 4.266 13 C -0.079 4.079 14 C -0.192 4.192 15 C -0.074 4.074 16 C 0.309 3.691 17 O -0.364 6.364 18 O -0.277 6.277 19 C -0.043 4.043 20 C 0.025 3.975 21 H 0.158 0.842 22 F -0.147 7.147 23 C 0.379 3.621 24 F -0.152 7.152 25 F -0.160 7.160 26 F -0.134 7.134 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.560 -6.613 -10.005 12.830 hybrid contribution -0.205 -1.645 -0.226 1.673 sum 4.355 -8.258 -10.231 13.851 Atomic orbital electron populations 1.70555 1.08030 1.32973 1.32274 1.27196 0.95569 1.04452 0.90119 0.83654 0.76029 0.73074 0.77678 1.20443 1.18266 1.21856 1.20609 0.94846 0.96566 1.42375 0.90461 1.17508 0.92812 0.89780 0.88491 1.21150 0.95704 1.04806 1.04491 1.20649 0.93823 0.96766 0.97733 1.20339 0.98203 1.01304 1.06742 1.20443 0.93852 0.97117 0.96501 1.18973 0.93570 1.02956 1.03731 1.19977 1.04379 0.97898 0.85194 1.24396 0.73401 0.84633 0.86673 1.90674 1.42121 1.19077 1.84542 1.86546 1.78878 1.47060 1.15255 1.23300 1.04536 0.95435 0.80984 1.22559 0.93965 0.99023 0.81919 0.84177 1.92966 1.96925 1.84240 1.40612 1.20800 0.88836 0.76258 0.76221 1.93257 1.72793 1.53177 1.96022 1.93219 1.89689 1.68569 1.64499 1.93298 1.96318 1.82353 1.41477 0.90336 0.87630 0.88702 0.88809 0.88939 0.88953 0.87534 0.88587 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.00 13.65 55.55 0.76 -21.24 16 2 C 0.05 1.22 5.42 -17.34 -0.09 1.13 16 3 Si 1.07 25.26 24.89 -169.99 -4.23 21.03 16 4 H -0.28 -6.14 6.44 56.52 0.36 -5.77 16 5 H -0.26 -6.29 7.02 56.52 0.40 -5.89 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -13.45 8.80 -37.75 -0.33 -13.78 16 8 H 0.08 2.03 6.60 -52.49 -0.35 1.68 16 9 C 0.12 2.91 5.13 -106.82 -0.55 2.36 16 10 C -0.24 -5.83 7.26 -38.87 -0.28 -6.12 16 11 C -0.07 -1.54 10.02 -39.66 -0.40 -1.94 16 12 C -0.25 -5.05 10.05 -39.29 -0.39 -5.45 16 13 C -0.06 -1.24 9.66 -39.66 -0.38 -1.63 16 14 C -0.19 -4.21 4.43 -103.91 -0.46 -4.67 16 15 C -0.04 -0.69 5.47 -29.03 -0.16 -0.85 16 16 C 0.47 8.82 7.95 36.01 0.29 9.11 16 17 O -0.48 -10.71 15.78 -18.75 -0.30 -11.01 16 18 O -0.36 -5.51 8.19 -39.27 -0.32 -5.83 16 19 C 0.03 0.42 5.22 37.16 0.19 0.61 16 20 C 0.06 0.64 3.80 -26.73 -0.10 0.54 16 21 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 22 F -0.17 -1.80 17.04 2.25 0.04 -1.76 16 23 C 0.43 5.31 2.89 37.16 0.11 5.42 16 24 F -0.17 -2.47 16.87 2.25 0.04 -2.43 16 25 F -0.18 -2.08 17.30 2.25 0.04 -2.04 16 26 F -0.15 -2.06 15.35 2.25 0.03 -2.03 16 27 H 0.29 7.45 8.73 -40.82 -0.36 7.10 16 28 H 0.11 2.53 4.43 -52.48 -0.23 2.30 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 33 H 0.11 1.99 6.51 -51.93 -0.34 1.66 16 34 H 0.10 1.36 7.94 -51.93 -0.41 0.95 16 35 H 0.10 1.15 8.13 -51.93 -0.42 0.72 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -29.38 318.47 -4.76 -34.14 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.06 Total: 1.64 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.56 Total: -15.26 kcal Atomic # 7 Polarization: -22.00 SS G_CDS: 0.76 Total: -21.24 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.62 Total: -16.84 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 0.15 Total: -8.26 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.23 Total: 21.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.38 -4.76 -34.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800195524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.661 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds