Wall clock time and date at job start Tue Mar 31 2020 12:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36874 * 126.39854 * 2 1 4 4 Cl 1.73597 * 126.60223 * 0.22662 * 3 2 1 5 5 C 1.34797 * 106.80059 * 179.97438 * 3 2 1 6 6 N 1.34167 * 108.01508 * 359.97438 * 5 3 2 7 7 C 1.30470 * 109.27083 * 0.02562 * 6 5 3 8 8 C 1.50700 * 125.64542 * 180.02562 * 7 6 5 9 9 O 1.45192 * 109.47380 * 89.96870 * 8 7 6 10 10 C 1.34806 * 117.00135 * 179.97438 * 9 8 7 11 11 O 1.21534 * 119.99577 * 0.02562 * 10 9 8 12 12 C 1.47289 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.39289 * 120.28786 * 357.17025 * 12 10 9 14 14 C 1.38200 * 120.08605 * 179.97438 * 13 12 10 15 15 C 1.38842 * 120.68368 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.58017 * 359.97438 * 15 14 13 17 17 C 1.40707 * 119.88574 * 359.73677 * 16 15 14 18 18 C 1.40860 * 120.32944 * 180.25487 * 17 16 15 19 19 H 1.08005 * 120.00365 * 214.91702 * 18 17 16 20 20 C 1.40294 * 119.99914 * 34.92688 * 18 17 16 21 21 N 1.30614 * 120.00380 * 9.90726 * 20 18 17 22 22 Si 1.86806 * 120.00209 * 189.90607 * 20 18 17 23 23 H 1.48502 * 109.46953 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47117 * 119.99630 * 22 20 18 25 25 H 1.48497 * 109.47245 * 239.99816 * 22 20 18 26 26 H 1.09003 * 109.47030 * 90.02681 * 1 2 3 27 27 H 1.09006 * 109.47544 * 210.02529 * 1 2 3 28 28 H 1.09002 * 109.47489 * 330.02584 * 1 2 3 29 29 H 1.08009 * 125.99160 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.46757 * 209.97681 * 8 7 6 31 31 H 1.09007 * 109.46641 * 329.97161 * 8 7 6 32 32 H 1.08007 * 119.95494 * 359.96341 * 13 12 10 33 33 H 1.07997 * 119.65983 * 180.02562 * 14 13 12 34 34 H 1.07994 * 119.70671 * 179.97438 * 15 14 13 35 35 H 1.07995 * 120.05705 * 179.97438 * 16 15 14 36 36 H 0.97003 * 120.00641 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 17 1.7697 2.7618 0.0055 5 6 3.5471 0.6496 0.0006 6 7 3.5100 -0.6916 0.0015 7 6 2.2670 -1.0880 0.0010 8 6 1.8024 -2.5216 0.0022 9 8 1.6528 -2.9807 1.3715 10 6 1.2402 -4.2517 1.5492 11 8 1.0122 -4.9568 0.5859 12 6 1.0656 -4.7858 2.9107 13 6 1.3812 -4.0026 4.0184 14 6 1.2154 -4.5077 5.2940 15 6 0.7351 -5.7957 5.4891 16 6 0.4147 -6.5936 4.4147 17 6 0.5684 -6.1015 3.1055 18 6 0.2382 -6.9083 1.9991 19 1 0.8148 -6.8385 1.0885 20 6 -0.8399 -7.8024 2.0798 21 7 -1.6544 -7.7531 3.0997 22 14 -1.1106 -9.0636 0.7286 23 1 -0.0575 -8.9128 -0.3075 24 1 -1.0450 -10.4300 1.3065 25 1 -2.4448 -8.8503 0.1124 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 4.4382 1.2600 0.0003 30 1 0.8439 -2.5933 -0.5120 31 1 2.5372 -3.1421 -0.5108 32 1 1.7563 -2.9992 3.8801 33 1 1.4618 -3.8943 6.1480 34 1 0.6120 -6.1747 6.4928 35 1 0.0422 -7.5943 4.5762 36 1 -2.3996 -8.3716 3.1557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922968278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:12 Heat of formation + Delta-G solvation = -20.264396 kcal Electronic energy + Delta-G solvation = -23558.737117 eV Core-core repulsion = 19841.411158 eV Total energy + Delta-G solvation = -3717.325959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.40023 -41.17854 -39.10362 -37.90376 -37.17963 -35.62210 -35.29173 -32.43210 -31.80599 -31.30438 -28.45068 -27.73726 -27.13624 -24.42255 -22.92523 -22.73497 -21.52636 -21.32659 -19.40762 -18.56592 -18.51243 -17.47286 -17.30341 -17.10118 -16.89370 -16.09148 -15.95551 -15.49325 -15.22344 -14.87929 -14.49850 -14.24676 -14.17770 -14.12884 -13.75773 -13.52309 -13.46472 -12.99776 -12.90047 -12.86502 -12.59830 -12.54576 -12.36182 -11.99289 -11.72925 -11.54729 -11.27406 -11.18330 -10.87076 -10.70800 -9.56716 -9.52724 -9.32567 -8.75597 -6.47223 0.30587 0.34605 0.48874 0.98076 1.36753 1.47582 1.49420 1.52021 1.76524 2.00238 2.19924 2.25390 2.71304 3.13139 3.56939 3.62928 3.70023 4.06239 4.19895 4.20392 4.32370 4.38353 4.40410 4.51132 4.58650 4.83914 4.86949 5.05232 5.16504 5.25787 5.33604 5.42811 5.58842 5.70294 5.78563 5.99435 6.05417 6.27419 6.63094 6.69885 6.77329 6.86392 7.19105 8.22043 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003182 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.787561 B = 8796.935764 C = 9613.730665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.439 5.439 3 C 0.021 3.979 4 Cl 0.019 6.981 5 C -0.004 4.004 6 N -0.488 5.488 7 C 0.209 3.791 8 C 0.155 3.845 9 O -0.363 6.363 10 C 0.511 3.489 11 O -0.537 6.537 12 C -0.273 4.273 13 C -0.038 4.038 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.173 4.173 17 C 0.123 3.877 18 C -0.457 4.457 19 H 0.093 0.907 20 C 0.036 3.964 21 N -0.810 5.810 22 Si 0.981 3.019 23 H -0.266 1.266 24 H -0.255 1.255 25 H -0.264 1.264 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.207 0.793 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 14.984 -4.534 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.123 5.123 3 C -0.121 4.121 4 Cl 0.047 6.953 5 C -0.155 4.155 6 N -0.209 5.209 7 C -0.052 4.052 8 C 0.080 3.920 9 O -0.280 6.280 10 C 0.362 3.638 11 O -0.429 6.429 12 C -0.276 4.276 13 C -0.057 4.057 14 C -0.257 4.257 15 C -0.101 4.101 16 C -0.192 4.192 17 C 0.119 3.881 18 C -0.485 4.485 19 H 0.111 0.889 20 C -0.181 4.181 21 N -0.436 5.436 22 Si 0.802 3.198 23 H -0.190 1.190 24 H -0.179 1.179 25 H -0.189 1.189 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.224 0.776 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.478 14.312 -4.731 15.146 hybrid contribution -1.045 0.128 -0.601 1.212 sum 0.433 14.440 -5.332 15.399 Atomic orbital electron populations 1.22530 0.73748 1.06427 1.06022 1.45298 1.09344 1.04895 1.52788 1.21987 0.91143 0.83388 1.15609 1.98390 1.91531 1.08052 1.97335 1.22697 0.95963 0.90172 1.06688 1.70352 1.18985 1.12531 1.19052 1.22314 0.85889 0.89401 1.07587 1.20846 1.02808 0.86185 0.82205 1.86604 1.79907 1.30946 1.30554 1.21280 0.73509 0.78418 0.90566 1.90708 1.50013 1.58766 1.43433 1.19037 1.23182 0.96415 0.88991 1.21083 0.94708 0.97703 0.92183 1.20811 1.11253 0.97388 0.96261 1.21237 0.96276 0.94315 0.98258 1.21285 1.05684 1.00128 0.92071 1.17797 0.87029 0.89211 0.94018 1.20399 1.11801 1.15812 1.00473 0.88942 1.26865 0.94379 0.97939 0.98955 1.69722 1.11576 1.32711 1.29556 0.85166 0.79030 0.77572 0.78066 1.19018 1.17929 1.18859 0.87458 0.88942 0.87266 0.77584 0.88348 0.88539 0.86205 0.85086 0.85572 0.87522 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 10.66 127.77 1.36 2.26 16 2 N -0.44 -10.52 3.15 -526.50 -1.66 -12.18 16 3 C 0.02 0.46 7.49 83.12 0.62 1.08 16 4 Cl 0.02 0.31 28.93 -2.72 -0.08 0.23 16 5 C 0.00 -0.11 11.86 83.55 0.99 0.88 16 6 N -0.49 -15.29 11.25 -187.94 -2.11 -17.40 16 7 C 0.21 6.24 7.55 138.10 1.04 7.28 16 8 C 0.16 5.04 5.56 71.24 0.40 5.43 16 9 O -0.36 -14.45 9.46 -57.17 -0.54 -14.99 16 10 C 0.51 24.17 7.86 70.20 0.55 24.72 16 11 O -0.54 -27.44 13.30 19.72 0.26 -27.18 16 12 C -0.27 -13.59 5.92 -19.71 -0.12 -13.70 16 13 C -0.04 -1.67 9.60 22.51 0.22 -1.45 16 14 C -0.24 -9.56 10.03 22.41 0.22 -9.34 16 15 C -0.08 -3.49 10.01 22.26 0.22 -3.27 16 16 C -0.17 -8.59 8.62 22.72 0.20 -8.39 16 17 C 0.12 6.59 5.49 -21.10 -0.12 6.47 16 18 C -0.46 -25.02 7.78 23.41 0.18 -24.84 16 19 H 0.09 5.29 5.72 -2.91 -0.02 5.27 16 20 C 0.04 1.78 5.24 85.37 0.45 2.23 16 21 N -0.81 -40.74 11.23 21.88 0.25 -40.49 16 22 Si 0.98 38.82 29.57 68.60 2.03 40.85 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.75 7.66 -2.38 -0.02 1.73 16 28 H 0.11 1.45 7.92 -2.39 -0.02 1.43 16 29 H 0.21 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.10 2.84 7.70 -2.39 -0.02 2.82 16 31 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 32 H 0.12 4.67 7.60 -2.91 -0.02 4.65 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.11 5.44 6.68 -2.91 -0.02 5.43 16 36 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 Total: -1.00 -64.73 333.93 5.49 -59.24 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.13 Total: 22.55 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 6.22 Total: -10.63 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -3.53 Total: -70.07 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.28 Total: -42.18 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -64.73 5.49 -59.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922968278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.972 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds