Wall clock time and date at job start Tue Mar 31 2020 13:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29941 * 126.28623 * 2 1 4 4 O 1.21299 * 110.24860 * 180.02562 * 3 2 1 5 5 C 1.33635 * 109.81537 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.55591 * 179.97438 * 5 4 3 7 7 N 1.46498 * 115.55427 * 209.68506 * 6 5 4 8 8 C 1.38409 * 119.99940 * 65.14609 * 7 6 5 9 9 N 1.32747 * 119.43555 * 4.85483 * 8 7 6 10 10 C 1.31472 * 121.73848 * 179.74493 * 9 8 7 11 11 C 1.40793 * 120.38691 * 0.52191 * 10 9 8 12 12 C 1.41194 * 120.56153 * 179.71819 * 11 10 9 13 13 H 1.08001 * 120.00070 * 28.76115 * 12 11 10 14 14 C 1.39866 * 120.00263 * 208.75440 * 12 11 10 15 15 N 1.30902 * 119.99640 * 10.11644 * 14 12 11 16 16 Si 1.86799 * 120.00294 * 190.11900 * 14 12 11 17 17 H 1.48501 * 109.47201 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47002 * 120.00232 * 16 14 12 19 19 H 1.48502 * 109.47123 * 239.99868 * 16 14 12 20 20 C 1.41277 * 118.87187 * 359.74156 * 11 10 9 21 21 C 1.36668 * 118.40027 * 0.02562 * 20 11 10 22 22 Cl 1.73606 * 120.26400 * 179.97438 * 21 20 11 23 23 C 1.53002 * 117.49582 * 63.97725 * 6 5 4 24 24 C 1.53004 * 117.49654 * 355.35522 * 6 5 4 25 25 N 1.31134 * 106.89778 * 0.22757 * 5 4 3 26 26 H 1.08999 * 109.47358 * 89.97556 * 1 2 3 27 27 H 1.09006 * 109.47003 * 209.97511 * 1 2 3 28 28 H 1.08998 * 109.47253 * 329.97035 * 1 2 3 29 29 H 0.97000 * 119.99908 * 245.15411 * 7 6 5 30 30 H 1.08004 * 119.80740 * 180.24007 * 10 9 8 31 31 H 0.97003 * 120.00315 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.80097 * 180.02562 * 20 11 10 33 33 H 1.08996 * 117.49680 * 359.97438 * 23 6 5 34 34 H 1.09003 * 117.49934 * 145.02174 * 23 6 5 35 35 H 1.08995 * 117.49637 * 214.97639 * 24 6 5 36 36 H 1.09000 * 117.49471 * 0.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 7 4.7060 -2.7447 -0.6555 8 6 4.4693 -2.8224 -2.0170 9 7 4.4229 -1.7073 -2.7358 10 6 4.2062 -1.7288 -4.0324 11 6 4.0039 -2.9515 -4.7005 12 6 3.7649 -2.9784 -6.0918 13 1 4.1709 -2.2030 -6.7245 14 6 3.0026 -4.0092 -6.6507 15 7 2.3475 -4.8340 -5.8735 16 14 2.9193 -4.2091 -8.5061 17 1 3.7428 -3.1573 -9.1547 18 1 3.4397 -5.5477 -8.8836 19 1 1.5094 -4.0815 -8.9549 20 6 4.0436 -4.1509 -3.9550 21 6 4.2772 -4.0733 -2.6107 22 17 4.3354 -5.5168 -1.6480 23 6 5.7143 -1.3186 1.2174 24 6 6.1231 -0.6821 -0.1126 25 7 2.3030 -1.0841 -0.0046 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3633 0.8897 0.5143 29 1 4.8115 -3.5560 -0.1345 30 1 4.1786 -0.8027 -4.5875 31 1 1.8184 -5.5488 -6.2610 32 1 3.8930 -5.1061 -4.4359 33 1 5.4016 -0.6503 2.0196 34 1 6.2503 -2.2138 1.5327 35 1 6.9279 -1.1586 -0.6722 36 1 6.0790 0.4046 -0.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161312576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:34 Heat of formation + Delta-G solvation = 106.702307 kcal Electronic energy + Delta-G solvation = -24243.004465 eV Core-core repulsion = 20563.476947 eV Total energy + Delta-G solvation = -3679.527518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.53008 -40.72727 -39.04104 -37.30236 -37.00378 -36.02993 -34.11499 -33.50459 -32.40299 -30.67900 -30.05263 -26.93080 -25.82305 -24.48399 -23.79045 -23.30111 -22.98699 -21.16033 -19.34257 -19.11262 -18.69779 -18.28579 -17.81240 -17.09805 -16.35432 -16.01069 -15.78074 -15.10455 -15.00251 -14.79593 -14.50977 -14.40645 -14.02059 -13.64708 -13.62495 -13.29595 -13.21641 -12.88207 -12.75480 -12.72011 -12.51662 -12.41165 -12.14508 -12.01388 -11.97844 -11.78093 -11.58189 -11.28941 -10.86496 -10.42697 -10.17293 -9.98784 -8.73897 -8.50885 -6.27818 0.13372 0.60299 0.94766 1.23294 1.38898 1.41420 1.47654 1.55692 1.64490 2.22145 2.39490 2.70529 2.73814 2.85603 3.08660 3.57238 3.72486 3.87970 3.93353 4.12275 4.39774 4.47133 4.50224 4.59841 4.69069 4.70575 4.75502 4.95633 5.02950 5.05872 5.10060 5.18893 5.21013 5.27908 5.74757 5.77996 6.23896 6.49319 6.63419 6.77500 6.85852 7.19450 7.65274 8.35551 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004468 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.572059 B = 6265.830492 C = 7092.349941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.157 3.843 3 N -0.410 5.410 4 O 0.067 5.933 5 C 0.235 3.765 6 C 0.164 3.836 7 N -0.677 5.677 8 C 0.302 3.698 9 N -0.499 5.499 10 C 0.009 3.991 11 C 0.015 3.985 12 C -0.482 4.482 13 H 0.084 0.916 14 C 0.032 3.968 15 N -0.839 5.839 16 Si 0.985 3.015 17 H -0.256 1.256 18 H -0.266 1.266 19 H -0.271 1.271 20 C -0.096 4.096 21 C -0.108 4.108 22 Cl -0.081 7.081 23 C -0.112 4.112 24 C -0.142 4.142 25 N -0.504 5.504 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.415 0.585 30 H 0.140 0.860 31 H 0.287 0.713 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 3.797 11.462 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 N -0.123 5.123 4 O 0.013 5.987 5 C 0.013 3.987 6 C 0.070 3.930 7 N -0.317 5.317 8 C 0.068 3.932 9 N -0.215 5.215 10 C -0.149 4.149 11 C 0.010 3.990 12 C -0.513 4.513 13 H 0.102 0.898 14 C -0.181 4.181 15 N -0.466 5.466 16 Si 0.806 3.194 17 H -0.179 1.179 18 H -0.191 1.191 19 H -0.196 1.196 20 C -0.123 4.123 21 C -0.140 4.140 22 Cl -0.053 7.053 23 C -0.150 4.150 24 C -0.181 4.181 25 N -0.238 5.238 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.255 0.745 30 H 0.157 0.843 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.701 4.924 11.937 13.192 hybrid contribution -0.512 -1.562 -1.386 2.150 sum 2.188 3.362 10.551 11.288 Atomic orbital electron populations 1.20285 0.80848 1.05842 1.04800 1.26613 1.02090 0.83254 0.99550 1.74512 0.89670 1.24283 1.23789 1.85173 1.22304 1.24688 1.66507 1.28419 0.96161 0.81458 0.92658 1.17827 0.83557 0.86000 1.05586 1.42837 1.81231 1.04905 1.02706 1.17537 1.02493 0.87173 0.86029 1.66785 1.18113 1.28101 1.08466 1.22534 1.06770 0.96965 0.88672 1.18586 0.94050 0.91025 0.95377 1.19610 1.29579 1.09699 0.92402 0.89802 1.26700 0.92515 0.93670 1.05241 1.69830 1.22875 1.14632 1.39265 0.85103 0.78825 0.79290 0.76195 1.17915 1.19088 1.19586 1.21261 1.00055 0.99987 0.91021 1.20964 1.13778 0.86249 0.93047 1.98244 1.97478 1.38046 1.71566 1.23707 0.96195 1.04648 0.90439 1.23520 0.94362 1.00792 0.99436 1.71889 1.00534 1.29812 1.21594 0.89332 0.88191 0.87451 0.74491 0.84294 0.90220 0.85643 0.85476 0.84326 0.87045 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.51 71.24 0.75 -0.71 16 2 C 0.16 5.36 8.22 138.46 1.14 6.50 16 3 N -0.41 -14.29 12.16 -60.35 -0.73 -15.03 16 4 O 0.07 2.28 11.05 74.91 0.83 3.11 16 5 C 0.23 8.06 7.23 88.38 0.64 8.70 16 6 C 0.16 4.73 2.20 2.86 0.01 4.74 16 7 N -0.68 -22.91 5.52 -308.01 -1.70 -24.61 16 8 C 0.30 12.93 7.33 133.32 0.98 13.90 16 9 N -0.50 -22.85 9.16 -191.08 -1.75 -24.60 16 10 C 0.01 0.43 10.97 85.37 0.94 1.37 16 11 C 0.02 0.79 5.56 -21.18 -0.12 0.67 16 12 C -0.48 -24.81 9.07 23.39 0.21 -24.60 16 13 H 0.08 4.12 7.86 -2.91 -0.02 4.09 16 14 C 0.03 1.56 5.28 85.23 0.45 2.01 16 15 N -0.84 -43.06 10.84 21.82 0.24 -42.83 16 16 Si 0.98 37.39 29.57 68.60 2.03 39.42 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 20 C -0.10 -4.87 8.48 22.65 0.19 -4.67 16 21 C -0.11 -4.86 6.32 22.28 0.14 -4.72 16 22 Cl -0.08 -3.03 27.57 -2.72 -0.07 -3.10 16 23 C -0.11 -1.95 10.16 30.60 0.31 -1.64 16 24 C -0.14 -3.21 10.10 30.60 0.31 -2.90 16 25 N -0.50 -19.09 11.55 -303.24 -3.50 -22.59 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.42 12.56 7.45 -92.71 -0.69 11.87 16 30 H 0.14 6.40 8.06 -2.91 -0.02 6.37 16 31 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 32 H 0.13 6.70 6.29 -2.91 -0.02 6.68 16 33 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.11 2.41 7.99 -2.39 -0.02 2.39 16 Total: -1.00 -63.98 334.99 1.73 -62.24 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.46 Total: 29.33 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.94 Total: -1.35 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -7.45 Total: -129.65 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.83 Total: 3.11 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.07 Total: -3.10 kcal Total: -63.98 1.73 -62.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161312576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.945 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds