Wall clock time and date at job start Tue Mar 31 2020 13:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29031 * 124.91949 * 2 1 4 4 C 1.31776 * 117.13087 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.75189 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46975 * 305.01971 * 5 4 3 7 7 O 1.21291 * 119.99735 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99667 * 180.02562 * 6 5 4 9 9 C 1.40013 * 119.99543 * 175.68609 * 8 6 5 10 10 C 1.39370 * 119.91034 * 215.19917 * 9 8 6 11 11 C 1.38360 * 120.46902 * 179.97438 * 10 9 8 12 12 C 1.38002 * 120.28923 * 0.04675 * 11 10 9 13 13 F 1.35106 * 120.09275 * 179.97438 * 12 11 10 14 14 C 1.41002 * 119.81336 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.22997 * 179.97438 * 14 12 11 16 16 H 1.08008 * 119.99997 * 324.96014 * 15 14 12 17 17 C 1.39918 * 120.00126 * 145.23889 * 15 14 12 18 18 N 1.30854 * 120.00390 * 4.44074 * 17 15 14 19 19 Si 1.86806 * 120.00211 * 184.43950 * 17 15 14 20 20 H 1.48507 * 109.46969 * 90.00025 * 19 17 15 21 21 H 1.48498 * 109.47281 * 209.99828 * 19 17 15 22 22 H 1.48497 * 109.46835 * 330.00238 * 19 17 15 23 23 C 1.38136 * 119.91245 * 35.48595 * 9 8 6 24 24 C 1.33642 * 114.49929 * 0.22860 * 4 3 2 25 25 S 1.70983 * 124.91826 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46893 * 90.00139 * 1 2 3 27 27 H 1.09006 * 109.47158 * 209.99912 * 1 2 3 28 28 H 1.09000 * 109.47346 * 330.00341 * 1 2 3 29 29 H 1.09000 * 109.46816 * 185.02252 * 5 4 3 30 30 H 1.08998 * 109.47276 * 65.02503 * 5 4 3 31 31 H 0.96994 * 120.00730 * 355.68660 * 8 6 5 32 32 H 1.08002 * 119.76134 * 0.02562 * 10 9 8 33 33 H 1.08006 * 119.85596 * 180.02562 * 11 10 9 34 34 H 0.96998 * 120.00595 * 179.97438 * 18 17 15 35 35 H 1.08008 * 120.14691 * 0.02562 * 23 9 8 36 36 H 1.08001 * 126.04148 * 179.76520 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0246 -0.0012 6 6 4.2370 2.9361 -1.1648 7 8 3.3220 2.6810 -1.9191 8 7 4.9911 4.0346 -1.3673 9 6 4.7769 4.8321 -2.4980 10 6 5.8560 5.4505 -3.1268 11 6 5.6576 6.2406 -4.2452 12 6 4.3867 6.4256 -4.7502 13 9 4.1974 7.1983 -5.8422 14 6 3.2862 5.8059 -4.1232 15 6 1.9811 5.9897 -4.6325 16 1 1.6994 6.9377 -5.0666 17 6 1.0518 4.9456 -4.5691 18 7 1.3624 3.8293 -3.9611 19 14 -0.6323 5.1451 -5.3523 20 1 -0.5805 4.6817 -6.7623 21 1 -1.6263 4.3365 -4.6018 22 1 -1.0288 6.5757 -5.3157 23 6 3.4959 5.0085 -2.9838 24 6 3.9354 -0.4006 -0.0058 25 16 2.4856 -1.4020 0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 5.5447 1.6353 -0.0915 30 1 4.4375 2.5830 0.9303 31 1 5.6822 4.2728 -0.7298 32 1 6.8542 5.3114 -2.7388 33 1 6.5010 6.7149 -4.7250 34 1 0.7181 3.1056 -3.9168 35 1 2.6594 4.5330 -2.4932 36 1 4.9545 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176131283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:07 Heat of formation + Delta-G solvation = -34.930617 kcal Electronic energy + Delta-G solvation = -23850.503484 eV Core-core repulsion = 20146.958046 eV Total energy + Delta-G solvation = -3703.545438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.15958 -41.38089 -40.37261 -38.62385 -35.96855 -34.83034 -34.00561 -31.61341 -31.08760 -29.45081 -28.45566 -27.25113 -24.27710 -23.42655 -22.63251 -21.19475 -20.54400 -19.59632 -18.68877 -17.92240 -17.78142 -17.51993 -16.84176 -16.32881 -16.13545 -15.97667 -15.85879 -15.51603 -15.00931 -14.60680 -14.45709 -14.37001 -14.05544 -13.76378 -13.52829 -13.44311 -13.30512 -13.08837 -12.96554 -12.88346 -12.67164 -12.38879 -12.28699 -12.09074 -11.51067 -11.12044 -10.70704 -10.47990 -10.40609 -10.23566 -9.57286 -9.33780 -8.69637 -8.35457 -6.42180 -0.18177 0.51076 0.71545 0.80653 0.96398 1.31667 1.41800 1.46387 1.80892 1.96747 2.20011 2.50262 2.78420 3.20606 3.51195 3.85215 4.06812 4.14351 4.24111 4.37490 4.39723 4.50592 4.54959 4.62312 4.68043 4.83689 5.00577 5.04675 5.12035 5.20985 5.27384 5.31323 5.67006 5.85284 5.86770 6.14659 6.30830 6.60026 6.81179 6.90303 6.94582 6.96961 7.60190 8.39017 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.004501 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.189110 B = 6220.034042 C = 8138.829516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.027 3.973 3 N -0.490 5.490 4 C 0.062 3.938 5 C -0.052 4.052 6 C 0.483 3.517 7 O -0.516 6.516 8 N -0.662 5.662 9 C 0.138 3.862 10 C -0.214 4.214 11 C -0.113 4.113 12 C -0.066 4.066 13 F -0.171 7.171 14 C 0.056 3.944 15 C -0.501 4.501 16 H 0.066 0.934 17 C 0.025 3.975 18 N -0.795 5.795 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.258 1.258 23 C -0.156 4.156 24 C -0.256 4.256 25 S 0.144 5.856 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.421 0.579 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.279 0.721 35 H 0.133 0.867 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -11.799 13.068 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.251 4.251 3 N -0.205 5.205 4 C -0.071 4.071 5 C -0.094 4.094 6 C 0.269 3.731 7 O -0.388 6.388 8 N -0.310 5.310 9 C 0.043 3.957 10 C -0.235 4.235 11 C -0.132 4.132 12 C -0.087 4.087 13 F -0.151 7.151 14 C 0.052 3.948 15 C -0.531 4.531 16 H 0.084 0.916 17 C -0.191 4.191 18 N -0.419 5.419 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.178 4.178 24 C -0.395 4.395 25 S 0.398 5.602 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.049 -12.842 12.610 18.448 hybrid contribution -0.031 1.291 -0.698 1.468 sum 4.018 -11.551 11.912 17.072 Atomic orbital electron populations 1.20526 0.84208 1.04969 1.03999 1.27453 1.03018 0.91271 1.03344 1.66015 1.05767 1.33054 1.15649 1.19914 0.89862 0.94513 1.02774 1.20299 0.99382 0.92293 0.97413 1.21392 0.82272 0.81830 0.87558 1.90977 1.28709 1.72472 1.46659 1.43272 1.38703 1.25004 1.24013 1.17814 0.93342 0.94434 0.90064 1.20430 0.97656 1.06114 0.99278 1.20670 0.94159 1.00728 0.97671 1.18398 0.95250 1.05224 0.89801 1.91228 1.96420 1.74226 1.53207 1.17933 0.92895 0.92392 0.91532 1.19526 0.96641 0.99903 1.37053 0.91558 1.26760 1.03589 0.94222 0.94529 1.70009 1.36161 1.03891 1.31841 0.85221 0.76358 0.79506 0.78701 1.19018 1.19054 1.18214 1.21578 0.96517 1.02618 0.97117 1.27142 1.04803 0.95023 1.12549 1.83484 0.97012 1.11591 1.68085 0.90147 0.87188 0.90137 0.83289 0.85283 0.74063 0.83312 0.84448 0.91079 0.84912 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.46 71.23 0.75 -0.98 16 2 C 0.03 0.77 7.39 88.52 0.65 1.43 16 3 N -0.49 -16.98 9.68 -179.41 -1.74 -18.72 16 4 C 0.06 1.77 5.64 41.52 0.23 2.00 16 5 C -0.05 -1.23 6.20 29.10 0.18 -1.05 16 6 C 0.48 17.68 7.63 87.66 0.67 18.35 16 7 O -0.52 -25.54 12.83 -3.07 -0.04 -25.58 16 8 N -0.66 -22.39 5.34 -303.61 -1.62 -24.01 16 9 C 0.14 6.13 6.29 38.08 0.24 6.37 16 10 C -0.21 -8.48 9.97 22.57 0.22 -8.26 16 11 C -0.11 -4.96 10.00 22.24 0.22 -4.74 16 12 C -0.07 -3.56 7.31 22.89 0.17 -3.39 16 13 F -0.17 -9.22 16.82 44.97 0.76 -8.46 16 14 C 0.06 3.29 5.55 -21.26 -0.12 3.17 16 15 C -0.50 -30.04 8.69 23.43 0.20 -29.83 16 16 H 0.07 3.94 7.84 -2.91 -0.02 3.92 16 17 C 0.02 1.38 5.42 85.25 0.46 1.85 16 18 N -0.79 -46.53 10.55 21.82 0.23 -46.30 16 19 Si 0.98 43.15 29.56 68.60 2.03 45.17 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 23 C -0.16 -8.68 7.30 22.83 0.17 -8.51 16 24 C -0.26 -5.68 11.07 66.78 0.74 -4.94 16 25 S 0.14 3.07 23.18 -56.49 -1.31 1.76 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.15 2.13 8.03 -2.39 -0.02 2.11 16 30 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.42 9.57 8.82 -92.71 -0.82 8.75 16 32 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.28 15.44 8.30 -92.71 -0.77 14.67 16 35 H 0.13 8.11 4.35 -2.91 -0.01 8.10 16 36 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -81.77 332.26 3.43 -78.34 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.33 Total: 26.32 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.79 Total: -28.54 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -3.13 Total: -89.02 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.04 Total: -25.58 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.76 Total: -8.46 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -81.77 3.43 -78.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176131283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.410 kcal (2) G-P(sol) polarization free energy of solvation -81.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds