Wall clock time and date at job start Tue Mar 31 2020 13:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47176 * 270.00023 * 3 2 1 5 5 H 1.48510 * 109.47396 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47479 * 149.99721 * 3 2 1 7 7 C 1.37874 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99801 * 269.99932 * 10 9 7 12 12 C 1.50694 * 109.47272 * 272.61922 * 11 10 9 13 13 C 1.38672 * 120.42045 * 264.37089 * 12 11 10 14 14 C 1.38630 * 118.41750 * 179.78496 * 13 12 11 15 15 C 1.38227 * 119.16583 * 0.50449 * 14 13 12 16 16 N 1.31853 * 120.75870 * 359.72831 * 15 14 13 17 17 C 1.31887 * 121.73187 * 0.02562 * 16 15 14 18 18 C 1.34781 * 120.00196 * 89.99907 * 10 9 7 19 19 O 1.21576 * 119.99888 * 5.30431 * 18 10 9 20 20 C 1.47663 * 119.99745 * 185.31096 * 18 10 9 21 21 N 1.31823 * 126.46722 * 354.23031 * 20 18 10 22 22 N 1.28468 * 110.13956 * 179.69952 * 21 20 18 23 23 H 0.97005 * 124.93750 * 180.29324 * 22 21 20 24 24 C 1.35646 * 110.13050 * 0.46523 * 22 21 20 25 25 C 1.35461 * 107.12788 * 359.54418 * 24 22 21 26 26 Cl 1.73602 * 127.23715 * 180.26085 * 25 24 22 27 27 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47443 * 59.99951 * 9 7 2 29 29 H 1.09005 * 109.46989 * 300.00031 * 9 7 2 30 30 H 1.08992 * 109.46990 * 32.62249 * 11 10 9 31 31 H 1.09002 * 109.46924 * 152.61907 * 11 10 9 32 32 H 1.07998 * 120.79115 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.41917 * 180.21608 * 14 13 12 34 34 H 1.07996 * 119.62213 * 179.75509 * 15 14 13 35 35 H 1.07992 * 119.61932 * 179.97438 * 17 16 15 36 36 H 1.07994 * 126.43353 * 179.80746 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6800 -4.1699 -1.2664 12 6 1.7283 -5.2406 -1.7342 13 6 1.9788 -6.5749 -1.4517 14 6 1.0733 -7.5250 -1.8981 15 6 -0.0357 -7.1147 -2.6140 16 7 -0.2393 -5.8370 -2.8682 17 6 0.5980 -4.9055 -2.4552 18 6 2.6401 -4.1243 1.1695 19 8 2.1728 -3.7280 2.2196 20 6 3.6865 -5.1661 1.1735 21 7 4.2033 -5.7616 0.1170 22 7 5.0945 -6.6124 0.4805 23 1 5.6125 -7.1669 -0.1239 24 6 5.2034 -6.6255 1.8325 25 6 4.3243 -5.7135 2.3124 26 17 4.0395 -5.3025 3.9749 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.7326 -3.3786 -2.0141 31 1 3.6707 -4.6015 -1.1238 32 1 2.8563 -6.8666 -0.8938 33 1 1.2348 -8.5730 -1.6932 34 1 -0.7437 -7.8490 -2.9687 35 1 0.3980 -3.8690 -2.6830 36 1 5.8693 -7.2436 2.4164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187831907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:43 Heat of formation + Delta-G solvation = 95.670861 kcal Electronic energy + Delta-G solvation = -24509.961928 eV Core-core repulsion = 20829.956050 eV Total energy + Delta-G solvation = -3680.005878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.81019 -39.96649 -38.58856 -36.40261 -35.29018 -33.02053 -32.05987 -31.77047 -31.10378 -30.75218 -27.64453 -25.97346 -24.19692 -23.33518 -22.33516 -21.82907 -21.51762 -19.33176 -18.16001 -17.04878 -16.60222 -16.36462 -15.99013 -15.78729 -15.22811 -15.01418 -14.63167 -14.20837 -14.07590 -13.77560 -13.49685 -12.95611 -12.93417 -12.71246 -12.37963 -12.16419 -11.90732 -11.54909 -11.22291 -10.96622 -10.84837 -10.55965 -10.35224 -10.16177 -9.73046 -9.57227 -9.47051 -9.21874 -9.12283 -8.91534 -8.75738 -8.41351 -7.70221 -6.02307 -4.07514 1.32028 1.50871 1.52120 1.89609 2.05797 2.88727 3.32411 3.39312 3.43293 3.75690 3.86648 4.14699 4.45558 4.59733 4.61514 4.69550 5.01303 5.04842 5.17902 5.24425 5.30742 5.33388 5.35689 5.60150 5.81957 5.91400 6.07362 6.24143 6.33441 6.56825 6.74071 6.93913 7.07718 7.44396 7.51830 7.62959 7.93751 8.21693 8.23041 8.33377 8.86600 9.02625 9.57534 11.05622 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.006190 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.098086 B = 4522.387570 C = 6883.344037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.246 3.754 10 N -0.576 5.576 11 C 0.133 3.867 12 C -0.138 4.138 13 C -0.065 4.065 14 C -0.185 4.185 15 C 0.089 3.911 16 N -0.488 5.488 17 C 0.116 3.884 18 C 0.583 3.417 19 O -0.512 6.512 20 C 0.026 3.974 21 N -0.252 5.252 22 N -0.390 5.390 23 H 0.450 0.550 24 C 0.001 3.999 25 C -0.106 4.106 26 Cl -0.008 7.008 27 H 0.264 0.736 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 -18.421 -1.847 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.306 5.306 11 C 0.008 3.992 12 C -0.141 4.141 13 C -0.092 4.092 14 C -0.205 4.205 15 C -0.068 4.068 16 N -0.196 5.196 17 C -0.041 4.041 18 C 0.367 3.633 19 O -0.385 6.385 20 C -0.136 4.136 21 N -0.088 5.088 22 N -0.104 5.104 23 H 0.295 0.705 24 C -0.145 4.145 25 C -0.143 4.143 26 Cl 0.021 6.979 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.746 -17.753 -2.725 20.435 hybrid contribution 1.546 0.304 1.130 1.939 sum 11.292 -17.449 -1.595 20.845 Atomic orbital electron populations 1.69935 1.05958 1.27062 1.50099 1.24913 0.94849 0.99136 0.95006 0.86512 0.79884 0.83131 0.77991 1.20633 1.21103 1.19881 1.21410 0.93398 0.90463 1.51458 0.92313 1.19387 0.87317 0.81637 0.98863 1.48089 1.45045 1.34090 1.03376 1.20864 0.97041 0.94056 0.87230 1.21412 0.98271 0.95661 0.98746 1.21824 0.98863 0.92478 0.96036 1.22084 0.96788 1.00354 1.01316 1.22683 0.95762 0.92985 0.95385 1.67715 1.29910 1.01606 1.20378 1.22908 0.89243 0.99192 0.92736 1.16862 0.81160 0.80398 0.84903 1.90822 1.56846 1.60015 1.30848 1.22519 1.01594 1.01137 0.88393 1.73691 1.04867 1.05196 1.25044 1.43481 1.29944 1.30826 1.06139 0.70522 1.22641 1.03519 1.03202 0.85117 1.20869 1.02586 1.02259 0.88599 1.98371 1.95484 1.92751 1.11318 0.92663 0.94647 0.93501 0.89215 0.86646 0.84441 0.85602 0.83407 0.82339 0.79147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 6.40 5.21 -5.20 -0.03 6.37 16 10 N -0.58 -12.42 2.44 -177.62 -0.43 -12.85 16 11 C 0.13 2.29 5.37 -5.19 -0.03 2.26 16 12 C -0.14 -2.22 5.48 -104.48 -0.57 -2.79 16 13 C -0.07 -0.91 9.58 -39.28 -0.38 -1.29 16 14 C -0.19 -2.32 10.11 -39.44 -0.40 -2.72 16 15 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 16 N -0.49 -8.13 10.36 -13.25 -0.14 -8.27 16 17 C 0.12 1.99 10.66 -17.55 -0.19 1.80 16 18 C 0.58 12.67 7.67 -12.41 -0.10 12.58 16 19 O -0.51 -12.95 15.45 5.30 0.08 -12.87 16 20 C 0.03 0.43 6.85 -82.76 -0.57 -0.14 16 21 N -0.25 -3.22 5.57 33.42 0.19 -3.03 16 22 N -0.39 -3.19 6.86 30.60 0.21 -2.98 16 23 H 0.45 1.61 8.96 -190.44 -1.71 -0.10 16 24 C 0.00 0.01 12.05 -16.86 -0.20 -0.19 16 25 C -0.11 -1.50 6.80 -39.31 -0.27 -1.77 16 26 Cl -0.01 -0.12 28.19 -51.86 -1.46 -1.58 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.04 0.92 7.26 -51.93 -0.38 0.54 16 29 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 30 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 31 H 0.12 1.78 4.52 -56.66 -0.26 1.52 16 32 H 0.14 1.71 5.18 -52.49 -0.27 1.44 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.16 2.75 7.48 -52.49 -0.39 2.36 16 36 H 0.19 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -35.36 327.95 -8.86 -44.22 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.62 Total: -0.44 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -3.34 Total: 1.73 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.56 Total: -52.75 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.46 Total: -1.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.36 -8.86 -44.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187831907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.888 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds