Wall clock time and date at job start Tue Mar 31 2020 13:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47176 * 270.00023 * 3 2 1 5 5 H 1.48510 * 109.47396 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47479 * 149.99721 * 3 2 1 7 7 C 1.37874 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99801 * 269.99932 * 10 9 7 12 12 C 1.50694 * 109.47272 * 272.61922 * 11 10 9 13 13 C 1.38672 * 120.42045 * 264.37089 * 12 11 10 14 14 C 1.38630 * 118.41750 * 179.78496 * 13 12 11 15 15 C 1.38227 * 119.16583 * 0.50449 * 14 13 12 16 16 N 1.31853 * 120.75870 * 359.72831 * 15 14 13 17 17 C 1.31887 * 121.73187 * 0.02562 * 16 15 14 18 18 C 1.34781 * 120.00196 * 89.99907 * 10 9 7 19 19 O 1.21576 * 119.99888 * 5.30431 * 18 10 9 20 20 C 1.47663 * 119.99745 * 185.31096 * 18 10 9 21 21 N 1.31823 * 126.46722 * 354.23031 * 20 18 10 22 22 N 1.28468 * 110.13956 * 179.69952 * 21 20 18 23 23 H 0.97005 * 124.93750 * 180.29324 * 22 21 20 24 24 C 1.35646 * 110.13050 * 0.46523 * 22 21 20 25 25 C 1.35461 * 107.12788 * 359.54418 * 24 22 21 26 26 Cl 1.73602 * 127.23715 * 180.26085 * 25 24 22 27 27 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47443 * 59.99951 * 9 7 2 29 29 H 1.09005 * 109.46989 * 300.00031 * 9 7 2 30 30 H 1.08992 * 109.46990 * 32.62249 * 11 10 9 31 31 H 1.09002 * 109.46924 * 152.61907 * 11 10 9 32 32 H 1.07998 * 120.79115 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.41917 * 180.21608 * 14 13 12 34 34 H 1.07996 * 119.62213 * 179.75509 * 15 14 13 35 35 H 1.07992 * 119.61932 * 179.97438 * 17 16 15 36 36 H 1.07994 * 126.43353 * 179.80746 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6800 -4.1699 -1.2664 12 6 1.7283 -5.2406 -1.7342 13 6 1.9788 -6.5749 -1.4517 14 6 1.0733 -7.5250 -1.8981 15 6 -0.0357 -7.1147 -2.6140 16 7 -0.2393 -5.8370 -2.8682 17 6 0.5980 -4.9055 -2.4552 18 6 2.6401 -4.1243 1.1695 19 8 2.1728 -3.7280 2.2196 20 6 3.6865 -5.1661 1.1735 21 7 4.2033 -5.7616 0.1170 22 7 5.0945 -6.6124 0.4805 23 1 5.6125 -7.1669 -0.1239 24 6 5.2034 -6.6255 1.8325 25 6 4.3243 -5.7135 2.3124 26 17 4.0395 -5.3025 3.9749 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.7326 -3.3786 -2.0141 31 1 3.6707 -4.6015 -1.1238 32 1 2.8563 -6.8666 -0.8938 33 1 1.2348 -8.5730 -1.6932 34 1 -0.7437 -7.8490 -2.9687 35 1 0.3980 -3.8690 -2.6830 36 1 5.8693 -7.2436 2.4164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187831907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:42 Heat of formation + Delta-G solvation = 70.911566 kcal Electronic energy + Delta-G solvation = -24511.035571 eV Core-core repulsion = 20829.956050 eV Total energy + Delta-G solvation = -3681.079521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.79801 -41.19894 -40.18441 -37.48552 -36.92547 -35.00089 -33.41343 -32.89916 -32.39309 -31.73019 -29.55339 -27.37727 -25.93656 -24.49911 -23.79074 -22.98702 -22.69653 -20.51743 -19.32894 -18.72169 -18.04873 -17.91035 -17.30068 -16.94764 -16.89975 -16.30439 -16.05698 -15.60477 -15.46490 -14.99232 -14.67730 -14.38200 -14.27152 -14.13986 -14.00976 -13.61669 -13.36834 -13.01196 -12.95341 -12.67830 -12.49307 -12.27126 -11.97144 -11.76110 -11.54736 -10.89760 -10.72223 -10.62238 -10.50519 -10.36486 -9.96605 -9.91094 -9.46943 -8.21009 -6.36070 0.15162 0.37404 0.40191 0.91196 1.12315 1.37590 1.40604 1.51014 1.93296 2.28247 2.39131 2.45761 2.94696 3.08805 3.42129 3.56729 3.78182 3.90565 3.93184 4.02851 4.14723 4.18251 4.42723 4.50936 4.69040 4.75952 4.83837 4.92885 5.06617 5.21860 5.23857 5.37686 5.57201 5.81076 5.82082 6.03974 6.05705 6.59116 6.72407 6.75064 7.04999 7.24233 7.39532 8.86377 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.006190 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.098086 B = 4522.387570 C = 6883.344037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.266 3.734 10 N -0.583 5.583 11 C 0.137 3.863 12 C -0.150 4.150 13 C -0.063 4.063 14 C -0.171 4.171 15 C 0.084 3.916 16 N -0.515 5.515 17 C 0.092 3.908 18 C 0.574 3.426 19 O -0.566 6.566 20 C -0.011 4.011 21 N -0.249 5.249 22 N -0.353 5.353 23 H 0.476 0.524 24 C 0.051 3.949 25 C -0.139 4.139 26 Cl -0.028 7.028 27 H 0.267 0.733 28 H 0.024 0.976 29 H -0.002 1.002 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.137 0.863 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -21.562 -2.534 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.145 3.855 10 N -0.312 5.312 11 C 0.014 3.986 12 C -0.153 4.153 13 C -0.090 4.090 14 C -0.190 4.190 15 C -0.073 4.073 16 N -0.225 5.225 17 C -0.065 4.065 18 C 0.361 3.639 19 O -0.443 6.443 20 C -0.170 4.170 21 N -0.087 5.087 22 N -0.071 5.071 23 H 0.327 0.673 24 C -0.096 4.096 25 C -0.177 4.177 26 Cl 0.000 7.000 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.154 0.846 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.830 -20.929 -3.475 24.793 hybrid contribution 0.633 1.066 1.298 1.795 sum 13.462 -19.863 -2.178 24.094 Atomic orbital electron populations 1.70065 1.07598 1.28165 1.50807 1.25838 0.95741 1.02965 0.94338 0.85419 0.78313 0.78317 0.78791 1.18804 1.20651 1.19644 1.21660 0.93288 0.91640 1.51511 0.92681 1.18772 0.87671 0.83182 0.95858 1.48028 1.44447 1.33307 1.05437 1.21010 0.98470 0.94192 0.84976 1.21268 0.97912 0.96601 0.99535 1.22067 0.99830 0.91481 0.95617 1.22532 0.95180 1.02185 0.99125 1.23352 0.96854 0.92293 0.94832 1.67674 1.30304 1.03039 1.21437 1.22698 0.90488 0.98772 0.94522 1.17538 0.81601 0.80975 0.83808 1.90767 1.58877 1.62196 1.32440 1.21681 1.02433 1.02125 0.90779 1.73443 1.05598 1.05730 1.23918 1.43600 1.27845 1.28837 1.06834 0.67286 1.23291 1.01020 1.00466 0.84864 1.21124 1.04733 1.04490 0.87335 1.98358 1.95792 1.93162 1.12689 0.92396 0.95782 0.98339 0.90313 0.84280 0.82580 0.81165 0.80026 0.84593 0.73713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.27 14.95 5.21 85.63 0.45 15.40 16 10 N -0.58 -26.67 2.44 -834.14 -2.03 -28.70 16 11 C 0.14 4.87 5.37 85.63 0.46 5.33 16 12 C -0.15 -4.90 5.48 -19.77 -0.11 -5.01 16 13 C -0.06 -1.62 9.58 22.47 0.22 -1.41 16 14 C -0.17 -3.66 10.11 22.36 0.23 -3.43 16 15 C 0.08 2.11 11.18 84.69 0.95 3.06 16 16 N -0.52 -17.38 10.36 -195.85 -2.03 -19.41 16 17 C 0.09 3.30 10.66 84.67 0.90 4.21 16 18 C 0.57 26.12 7.67 86.73 0.67 26.79 16 19 O -0.57 -30.62 15.45 -3.95 -0.06 -30.68 16 20 C -0.01 -0.35 6.85 42.45 0.29 -0.06 16 21 N -0.25 -5.61 5.57 -48.17 -0.27 -5.88 16 22 N -0.35 -3.89 6.86 -57.09 -0.39 -4.28 16 23 H 0.48 0.26 8.96 -219.99 -1.97 -1.71 16 24 C 0.05 0.63 12.05 83.46 1.01 1.64 16 25 C -0.14 -3.66 6.80 22.44 0.15 -3.51 16 26 Cl -0.03 -0.85 28.19 -2.72 -0.08 -0.93 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.02 1.38 7.26 -2.39 -0.02 1.36 16 29 H 0.00 -0.10 7.35 -2.38 -0.02 -0.12 16 30 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 31 H 0.14 4.20 4.52 -8.50 -0.04 4.16 16 32 H 0.16 3.31 5.18 -2.91 -0.02 3.29 16 33 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.14 5.30 7.48 -2.91 -0.02 5.28 16 36 H 0.25 0.40 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -85.87 327.95 2.51 -83.36 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -0.84 Total: 3.47 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.90 Total: 12.31 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.44 Total: -115.33 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.06 Total: -30.68 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -85.87 2.51 -83.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187831907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.276 kcal (2) G-P(sol) polarization free energy of solvation -85.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds