Wall clock time and date at job start Tue Mar 31 2020 13:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38245 * 119.95785 * 2 1 4 4 F 1.35104 * 120.08096 * 0.02769 * 3 2 1 5 5 C 1.39554 * 119.84148 * 180.02562 * 3 2 1 6 6 C 1.48341 * 120.12109 * 180.02562 * 5 3 2 7 7 C 1.39384 * 120.06637 * 130.00252 * 6 5 3 8 8 C 1.37915 * 119.93430 * 179.97438 * 7 6 5 9 9 C 1.38824 * 120.06715 * 0.02562 * 8 7 6 10 10 O 1.35881 * 119.93115 * 179.97438 * 9 8 7 11 11 C 1.42899 * 116.99605 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47221 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99546 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00382 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99620 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00229 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46780 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47399 * 119.99352 * 16 14 12 19 19 H 1.48502 * 109.46833 * 239.99637 * 16 14 12 20 20 C 1.38823 * 120.12961 * 0.02562 * 9 8 7 21 21 C 1.37908 * 120.07314 * 359.97438 * 20 9 8 22 22 C 1.39348 * 119.75617 * 0.27631 * 5 3 2 23 23 C 1.37989 * 119.90989 * 359.42787 * 22 5 3 24 24 C 1.38382 * 119.96036 * 179.97438 * 2 1 3 25 25 Cl 1.73594 * 119.87593 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47068 * 90.00035 * 1 2 3 27 27 H 1.09000 * 109.47106 * 210.00026 * 1 2 3 28 28 H 1.08999 * 109.47025 * 329.99805 * 1 2 3 29 29 H 1.08007 * 120.03299 * 0.25335 * 7 6 5 30 30 H 1.08000 * 119.96473 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47655 * 300.00376 * 11 10 9 32 32 H 1.09005 * 109.47234 * 60.00732 * 11 10 9 33 33 H 0.97002 * 119.99547 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.96235 * 179.97438 * 20 9 8 35 35 H 1.08000 * 120.03761 * 179.97438 * 21 20 9 36 36 H 1.07995 * 120.04216 * 179.72176 * 22 5 3 37 37 H 1.08000 * 119.91441 * 180.29896 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1977 0.0000 4 9 1.5226 2.3682 0.0006 5 6 3.5929 1.1949 -0.0005 6 6 4.3399 2.4765 0.0000 7 6 5.3618 2.6887 0.9238 8 6 6.0550 3.8810 0.9216 9 6 5.7353 4.8696 0.0008 10 8 6.4197 6.0435 0.0014 11 6 6.0393 7.0166 -0.9735 12 6 6.9017 8.2431 -0.8221 13 1 7.6644 8.2760 -0.0581 14 6 6.7172 9.3233 -1.6589 15 7 5.7888 9.2830 -2.5896 16 14 7.7867 10.8433 -1.4717 17 1 8.7489 10.6375 -0.3594 18 1 8.5321 11.0827 -2.7336 19 1 6.9291 12.0182 -1.1728 20 6 4.7173 4.6615 -0.9198 21 6 4.0206 3.4714 -0.9225 22 6 4.2820 -0.0162 -0.0069 23 6 3.5828 -1.2058 -0.0007 24 6 2.1981 -1.1989 0.0005 25 17 1.3258 -2.6998 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 5.6137 1.9184 1.6378 30 1 6.8472 4.0458 1.6369 31 1 6.1713 6.6010 -1.9725 32 1 4.9934 7.2872 -0.8279 33 1 5.6593 10.0428 -3.1785 34 1 4.4706 5.4327 -1.6347 35 1 3.2284 3.3103 -1.6387 36 1 5.3619 -0.0238 -0.0119 37 1 4.1168 -2.1445 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206284003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:07 Heat of formation + Delta-G solvation = -69.196673 kcal Electronic energy + Delta-G solvation = -22825.286291 eV Core-core repulsion = 19085.918507 eV Total energy + Delta-G solvation = -3739.367783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.01170 -41.11844 -40.22972 -38.40701 -37.38290 -35.12347 -34.16092 -32.57947 -32.04578 -30.22739 -28.96755 -28.00127 -25.51562 -24.35501 -23.40605 -22.84121 -21.71409 -19.26698 -18.76810 -18.49998 -17.90896 -17.34799 -17.00668 -16.69983 -16.51613 -16.23101 -16.07966 -15.45433 -14.81444 -14.69667 -14.68941 -14.54960 -14.35966 -14.07402 -13.77679 -13.65639 -13.42121 -13.24418 -12.99141 -12.89182 -12.61630 -12.47778 -12.35112 -12.21664 -11.92539 -11.86984 -11.80406 -11.35425 -10.75330 -10.04231 -9.90978 -9.78284 -8.85678 -8.41863 -6.56462 -0.35536 0.02502 0.35222 0.52886 0.99330 1.38434 1.39923 1.54663 2.25234 2.31285 2.69372 2.74931 2.93091 3.17108 3.40780 3.60946 3.78581 3.86170 3.94325 4.07541 4.28188 4.37381 4.42698 4.51974 4.62932 4.63577 4.72873 4.80696 4.91657 4.92853 5.00579 5.07578 5.12042 5.14003 5.27830 5.37773 5.48271 5.51644 5.66635 5.79324 5.82334 6.47200 6.74524 7.15732 8.70692 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.002286 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.006493 B =12242.869775 C =12749.944607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C 0.093 3.907 4 F -0.140 7.140 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.047 4.047 8 C -0.164 4.164 9 C 0.120 3.880 10 O -0.333 6.333 11 C 0.211 3.789 12 C -0.557 4.557 13 H 0.068 0.932 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.990 3.010 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.226 4.226 21 C -0.058 4.058 22 C -0.071 4.071 23 C -0.103 4.103 24 C -0.022 4.022 25 Cl -0.048 7.048 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.002 0.998 32 H 0.000 1.000 33 H 0.274 0.726 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.168 0.832 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 -25.299 5.911 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.116 4.116 3 C 0.074 3.926 4 F -0.119 7.119 5 C -0.063 4.063 6 C -0.111 4.111 7 C -0.064 4.064 8 C -0.183 4.183 9 C 0.074 3.926 10 O -0.247 6.247 11 C 0.137 3.863 12 C -0.594 4.594 13 H 0.087 0.913 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.812 3.188 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.245 4.245 21 C -0.076 4.076 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.049 4.049 25 Cl -0.019 7.019 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.187 0.813 30 H 0.164 0.836 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.185 0.815 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.646 -25.215 5.884 26.997 hybrid contribution -0.267 1.451 -0.614 1.598 sum -7.913 -23.764 5.270 25.595 Atomic orbital electron populations 1.20860 0.88356 1.04340 1.03983 1.19781 0.98437 0.90143 1.03257 1.17585 0.89330 0.80933 1.04801 1.91489 1.80244 1.46256 1.93864 1.18901 0.90548 0.94097 1.02785 1.18515 0.99638 0.93636 0.99278 1.21236 0.92370 0.95992 0.96825 1.20643 1.04207 0.92875 1.00569 1.19824 0.91108 0.86895 0.94822 1.86044 1.57991 1.23902 1.56776 1.20202 0.95261 0.85251 0.85537 1.21355 1.19688 0.99462 1.18882 0.91333 1.26001 0.96965 1.02244 0.93772 1.70069 1.33552 1.33028 1.19838 0.85039 0.78121 0.76924 0.78751 1.18572 1.19453 1.19558 1.21286 1.00362 1.00199 1.02649 1.21005 0.97493 0.91485 0.97605 1.21346 1.01718 0.88851 0.96960 1.21349 0.91247 1.00251 0.99282 1.20691 0.92796 0.86546 1.04856 1.98375 1.76532 1.30339 1.96670 0.89592 0.89191 0.91062 0.81349 0.83602 0.98012 0.98226 0.91708 0.87119 0.85535 0.81478 0.81241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.43 71.24 0.67 -1.22 16 2 C -0.11 -2.20 5.88 -19.83 -0.12 -2.32 16 3 C 0.09 2.19 7.10 22.59 0.16 2.35 16 4 F -0.14 -3.91 15.09 44.97 0.68 -3.23 16 5 C -0.06 -1.39 5.48 -20.00 -0.11 -1.50 16 6 C -0.11 -3.04 5.32 -20.04 -0.11 -3.15 16 7 C -0.05 -1.19 9.51 22.47 0.21 -0.97 16 8 C -0.16 -5.33 9.97 22.33 0.22 -5.11 16 9 C 0.12 5.04 6.69 22.55 0.15 5.19 16 10 O -0.33 -16.91 10.12 -92.21 -0.93 -17.85 16 11 C 0.21 11.92 4.49 71.24 0.32 12.24 16 12 C -0.56 -32.86 9.43 25.60 0.24 -32.62 16 13 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 14 C 0.01 0.54 5.46 84.65 0.46 1.01 16 15 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 16 Si 0.99 43.64 29.54 68.60 2.03 45.67 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 C -0.23 -9.15 9.02 22.33 0.20 -8.95 16 21 C -0.06 -1.92 8.86 22.47 0.20 -1.72 16 22 C -0.07 -1.10 9.51 22.48 0.21 -0.89 16 23 C -0.10 -1.36 9.81 22.27 0.22 -1.14 16 24 C -0.02 -0.35 6.32 22.36 0.14 -0.21 16 25 Cl -0.05 -0.66 27.27 -2.72 -0.07 -0.73 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.19 6.89 -2.39 -0.02 1.17 16 28 H 0.07 1.19 7.63 -2.39 -0.02 1.17 16 29 H 0.17 2.83 8.04 -2.91 -0.02 2.81 16 30 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.00 0.12 7.66 -2.39 -0.02 0.11 16 32 H 0.00 0.00 7.65 -2.38 -0.02 -0.02 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.11 4.95 6.28 -2.91 -0.02 4.93 16 35 H 0.13 3.89 7.77 -2.91 -0.02 3.87 16 36 H 0.17 1.82 8.04 -2.91 -0.02 1.80 16 37 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -67.23 339.24 6.17 -61.06 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.10 Total: 8.79 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 3.08 Total: -39.00 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.93 Total: -17.85 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.68 Total: -3.23 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.07 Total: -0.73 kcal Total: -67.23 6.17 -61.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206284003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.134 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds