Wall clock time and date at job start Tue Mar 31 2020 13:00:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29497 * 1
3 3 Si 1.86803 * 119.99803 * 2 1
4 4 H 1.48504 * 109.47103 * 270.00059 * 3 2 1
5 5 H 1.48506 * 109.47235 * 29.99877 * 3 2 1
6 6 H 1.48489 * 109.46991 * 150.00039 * 3 2 1
7 7 C 1.46561 * 120.00228 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00183 * 169.34817 * 7 2 1
9 9 C 1.40006 * 119.99947 * 349.35234 * 7 2 1
10 10 C 1.41267 * 120.28819 * 333.19919 * 9 7 2
11 11 C 1.37841 * 119.67134 * 180.30156 * 10 9 7
12 12 N 1.39744 * 119.87424 * 179.97438 * 11 10 9
13 13 C 1.39833 * 120.00011 * 185.61887 * 12 11 10
14 14 C 1.38925 * 120.04468 * 260.85769 * 13 12 11
15 15 C 1.38090 * 119.94722 * 180.02562 * 14 13 12
16 16 C 1.38499 * 120.04803 * 0.02562 * 15 14 13
17 17 F 1.35107 * 119.94570 * 180.02562 * 16 15 14
18 18 C 1.38452 * 120.10635 * 0.02562 * 16 15 14
19 19 C 1.38136 * 120.04563 * 359.68216 * 18 16 15
20 20 N 1.48019 * 120.02151 * 180.31861 * 19 18 16
21 21 O 1.31699 * 120.00122 * 5.61113 * 20 19 18
22 22 O 1.31702 * 119.99684 * 185.61308 * 20 19 18
23 23 C 1.39791 * 120.25596 * 359.97438 * 11 10 9
24 24 C 1.38288 * 120.59483 * 0.02562 * 23 11 10
25 25 C 1.38065 * 120.33068 * 0.02562 * 24 23 11
26 26 F 1.35098 * 120.13673 * 179.97438 * 25 24 23
27 27 H 0.97001 * 120.00473 * 0.02562 * 1 2 3
28 28 H 1.08005 * 120.16490 * 0.26037 * 10 9 7
29 29 H 0.96999 * 120.00246 * 5.61067 * 12 11 10
30 30 H 1.07994 * 120.03094 * 0.02684 * 14 13 12
31 31 H 1.08001 * 119.97545 * 179.97438 * 15 14 13
32 32 H 1.08000 * 119.97755 * 180.02562 * 18 16 15
33 33 H 1.07999 * 119.69967 * 180.02562 * 23 11 10
34 34 H 1.08006 * 119.83152 * 179.97438 * 24 23 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2950 0.0000 0.0000
3 14 2.2289 1.6178 0.0000
4 1 2.4764 2.0465 -1.4001
5 1 1.4263 2.6528 0.7000
6 1 3.5264 1.4402 0.7000
7 6 2.0278 -1.2692 -0.0006
8 1 3.0939 -1.2772 -0.1734
9 6 1.3459 -2.4714 0.2229
10 6 0.1521 -2.4836 0.9781
11 6 -0.5056 -3.6753 1.1955
12 7 -1.6866 -3.6923 1.9424
13 6 -2.2927 -4.9106 2.2645
14 6 -3.3673 -5.3725 1.5149
15 6 -3.9646 -6.5757 1.8351
16 6 -3.4935 -7.3214 2.9029
17 9 -4.0791 -8.4986 3.2140
18 6 -2.4233 -6.8626 3.6519
19 6 -1.8188 -5.6625 3.3316
20 7 -0.6703 -5.1759 4.1284
21 8 -0.1539 -5.9362 5.0717
22 8 -0.1647 -3.9826 3.8940
23 6 0.0042 -4.8669 0.6719
24 6 1.1720 -4.8675 -0.0688
25 6 1.8511 -3.6880 -0.3007
26 9 2.9919 -3.6931 -1.0244
27 1 -0.4851 0.8400 -0.0004
28 1 -0.2430 -1.5638 1.3835
29 1 -2.0860 -2.8590 2.2375
30 1 -3.7353 -4.7912 0.6825
31 1 -4.8004 -6.9350 1.2530
32 1 -2.0573 -7.4460 4.4838
33 1 -0.5186 -5.7955 0.8475
34 1 1.5551 -5.7954 -0.4672
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001210954786.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:22
Heat of formation + Delta-G solvation = -2.738893 kcal
Electronic energy + Delta-G solvation = -26114.917204 eV
Core-core repulsion = 21846.554528 eV
Total energy + Delta-G solvation = -4268.362676 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.076 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-49.37728 -47.06321 -40.49339 -38.05682 -37.53794 -35.01726 -33.95221 -33.44059
-32.07503 -30.11396 -29.93009 -27.38284 -26.24250 -25.11000 -23.20632 -22.42242
-21.43094 -20.34224 -18.89113 -18.05845 -17.86704 -17.12727 -16.60162 -16.46128
-16.25874 -15.98438 -15.84827 -15.48202 -14.98406 -14.65225 -14.21738 -14.01591
-13.84100 -13.40852 -13.16978 -12.67410 -12.49221 -12.21564 -11.82507 -11.75988
-11.56811 -11.46418 -11.11079 -11.03206 -10.74651 -10.56756 -10.30178 -10.26625
-9.90574 -9.57364 -9.50818 -9.23059 -8.95441 -7.63602 -7.04738 -6.47632
-4.44387 -0.61321 0.50035 0.98988 1.26205 2.65210 2.84045 2.93483
2.97891 3.02461 3.13306 3.51284 3.65734 3.78827 4.10600 4.30572
4.39583 4.51078 4.72407 5.07593 5.29762 5.45196 5.50824 5.64108
5.86224 5.93480 6.05289 6.15918 6.41340 6.69709 6.78424 7.00270
7.05064 7.09775 7.50198 7.56215 7.74345 8.02040 8.10651 8.26005
8.52192 8.60618 8.89484 9.87810
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.018081 B = 0.003795 C = 0.003717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1548.206225 B = 7377.210856 C = 7530.300298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.760 5.760
2 C 0.077 3.923
3 Si 0.920 3.080
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.255 1.255
7 C -0.451 4.451
8 H 0.086 0.914
9 C 0.117 3.883
10 C -0.200 4.200
11 C 0.217 3.783
12 N -0.709 5.709
13 C 0.247 3.753
14 C -0.100 4.100
15 C -0.091 4.091
16 C 0.091 3.909
17 F -0.126 7.126
18 C -0.090 4.090
19 C 0.010 3.990
20 N -0.022 5.022
21 O -0.208 6.208
22 O -0.094 6.094
23 C -0.294 4.294
24 C -0.083 4.083
25 C -0.068 4.068
26 F -0.167 7.167
27 H 0.288 0.712
28 H 0.130 0.870
29 H 0.413 0.587
30 H 0.162 0.838
31 H 0.156 0.844
32 H 0.164 0.836
33 H 0.082 0.918
34 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.319 -6.809 3.475 13.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.382 5.382
2 C -0.149 4.149
3 Si 0.743 3.257
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.179 1.179
7 C -0.478 4.478
8 H 0.105 0.895
9 C 0.114 3.886
10 C -0.223 4.223
11 C 0.122 3.878
12 N -0.344 5.344
13 C 0.149 3.851
14 C -0.120 4.120
15 C -0.111 4.111
16 C 0.070 3.930
17 F -0.104 7.104
18 C -0.110 4.110
19 C -0.079 4.079
20 N 0.461 4.539
21 O -0.390 6.390
22 O -0.304 6.304
23 C -0.316 4.316
24 C -0.103 4.103
25 C -0.088 4.088
26 F -0.147 7.147
27 H 0.100 0.900
28 H 0.148 0.852
29 H 0.253 0.747
30 H 0.180 0.820
31 H 0.174 0.826
32 H 0.182 0.818
33 H 0.100 0.900
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -11.994 -7.164 3.160 14.324
hybrid contribution 0.541 0.703 0.298 0.936
sum -11.453 -6.462 3.458 13.597
Atomic orbital electron populations
1.69102 1.08701 1.30300 1.30073 1.27425 0.94557 1.01838 0.91034
0.86115 0.80898 0.79074 0.79586 1.19109 1.19836 1.17855 1.20608
0.95887 0.89138 1.42216 0.89550 1.17262 0.91691 0.90786 0.88903
1.20587 0.99419 0.95353 1.06935 1.17364 0.84769 0.94677 0.90965
1.41931 1.27425 1.03241 1.61766 1.17387 0.90787 0.88113 0.88794
1.21621 0.95425 0.95536 0.99425 1.21518 1.00153 0.94091 0.95334
1.17167 0.94626 0.84149 0.97011 1.91567 1.82649 1.43756 1.92443
1.20838 0.94591 0.94489 1.01079 1.20746 0.92061 0.98267 0.96825
1.50136 1.00913 1.02552 1.00329 1.96243 1.64327 1.54017 1.24385
1.96396 1.62173 0.99845 1.71957 1.19543 1.02323 0.94646 1.15121
1.20121 0.95428 0.95350 0.99369 1.17897 0.89119 0.95211 1.06612
1.91242 1.49182 1.97413 1.76835 0.89991 0.85198 0.74731 0.82033
0.82631 0.81827 0.89991 0.88490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -17.77 10.84 55.99 0.61 -17.16 16
2 C 0.08 1.80 5.43 -15.18 -0.08 1.72 16
3 Si 0.92 17.68 29.66 -169.99 -5.04 12.64 16
4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16
5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16
6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16
7 C -0.45 -11.83 9.03 -35.57 -0.32 -12.16 16
8 H 0.09 2.26 7.82 -52.49 -0.41 1.85 16
9 C 0.12 3.11 5.61 -106.74 -0.60 2.51 16
10 C -0.20 -4.85 8.58 -38.58 -0.33 -5.18 16
11 C 0.22 4.64 5.04 -83.82 -0.42 4.22 16
12 N -0.71 -12.00 3.86 -8.43 -0.03 -12.03 16
13 C 0.25 3.51 4.36 -83.72 -0.36 3.15 16
14 C -0.10 -1.04 9.97 -39.38 -0.39 -1.43 16
15 C -0.09 -0.77 10.02 -39.54 -0.40 -1.17 16
16 C 0.09 0.90 7.30 -39.41 -0.29 0.62 16
17 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16
18 C -0.09 -1.07 9.55 -39.54 -0.38 -1.45 16
19 C 0.01 0.15 6.78 -79.75 -0.54 -0.39 16
20 N -0.02 -0.41 4.98 34.06 0.17 -0.24 16
21 O -0.21 -3.95 19.17 -31.57 -0.61 -4.55 16
22 O -0.09 -1.97 16.54 -31.57 -0.52 -2.49 16
23 C -0.29 -6.45 9.31 -38.98 -0.36 -6.81 16
24 C -0.08 -1.94 9.99 -39.63 -0.40 -2.34 16
25 C -0.07 -1.76 7.33 -38.30 -0.28 -2.04 16
26 F -0.17 -4.34 16.74 2.25 0.04 -4.30 16
27 H 0.29 5.98 8.27 -40.82 -0.34 5.64 16
28 H 0.13 3.18 6.09 -52.48 -0.32 2.86 16
29 H 0.41 6.40 8.83 -40.82 -0.36 6.04 16
30 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16
31 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16
32 H 0.16 1.80 7.59 -52.49 -0.40 1.40 16
33 H 0.08 1.66 6.90 -52.49 -0.36 1.29 16
34 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16
LS Contribution 318.35 15.07 4.80 4.80
Total: -1.00 -29.06 318.35 -7.96 -37.02
By element:
Atomic # 1 Polarization: 10.52 SS G_CDS: -2.25 Total: 8.27 kcal
Atomic # 6 Polarization: -15.60 SS G_CDS: -5.16 Total: -20.75 kcal
Atomic # 7 Polarization: -30.17 SS G_CDS: 0.74 Total: -29.43 kcal
Atomic # 8 Polarization: -5.91 SS G_CDS: -1.13 Total: -7.04 kcal
Atomic # 9 Polarization: -5.58 SS G_CDS: 0.08 Total: -5.50 kcal
Atomic # 14 Polarization: 17.68 SS G_CDS: -5.04 Total: 12.64 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -29.06 -7.96 -37.02 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210954786.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.278 kcal
(2) G-P(sol) polarization free energy of solvation -29.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds