Wall clock time and date at job start Tue Mar 31 2020 13:00:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29497 * 1
3 3 Si 1.86803 * 119.99803 * 2 1
4 4 H 1.48504 * 109.47103 * 270.00059 * 3 2 1
5 5 H 1.48506 * 109.47235 * 29.99877 * 3 2 1
6 6 H 1.48489 * 109.46991 * 150.00039 * 3 2 1
7 7 C 1.46561 * 120.00228 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00183 * 169.34817 * 7 2 1
9 9 C 1.40006 * 119.99947 * 349.35234 * 7 2 1
10 10 C 1.41267 * 120.28819 * 333.19919 * 9 7 2
11 11 C 1.37841 * 119.67134 * 180.30156 * 10 9 7
12 12 N 1.39744 * 119.87424 * 179.97438 * 11 10 9
13 13 C 1.39833 * 120.00011 * 185.61887 * 12 11 10
14 14 C 1.38925 * 120.04468 * 260.85769 * 13 12 11
15 15 C 1.38090 * 119.94722 * 180.02562 * 14 13 12
16 16 C 1.38499 * 120.04803 * 0.02562 * 15 14 13
17 17 F 1.35107 * 119.94570 * 180.02562 * 16 15 14
18 18 C 1.38452 * 120.10635 * 0.02562 * 16 15 14
19 19 C 1.38136 * 120.04563 * 359.68216 * 18 16 15
20 20 N 1.48019 * 120.02151 * 180.31861 * 19 18 16
21 21 O 1.31699 * 120.00122 * 5.61113 * 20 19 18
22 22 O 1.31702 * 119.99684 * 185.61308 * 20 19 18
23 23 C 1.39791 * 120.25596 * 359.97438 * 11 10 9
24 24 C 1.38288 * 120.59483 * 0.02562 * 23 11 10
25 25 C 1.38065 * 120.33068 * 0.02562 * 24 23 11
26 26 F 1.35098 * 120.13673 * 179.97438 * 25 24 23
27 27 H 0.97001 * 120.00473 * 0.02562 * 1 2 3
28 28 H 1.08005 * 120.16490 * 0.26037 * 10 9 7
29 29 H 0.96999 * 120.00246 * 5.61067 * 12 11 10
30 30 H 1.07994 * 120.03094 * 0.02684 * 14 13 12
31 31 H 1.08001 * 119.97545 * 179.97438 * 15 14 13
32 32 H 1.08000 * 119.97755 * 180.02562 * 18 16 15
33 33 H 1.07999 * 119.69967 * 180.02562 * 23 11 10
34 34 H 1.08006 * 119.83152 * 179.97438 * 24 23 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2950 0.0000 0.0000
3 14 2.2289 1.6178 0.0000
4 1 2.4764 2.0465 -1.4001
5 1 1.4263 2.6528 0.7000
6 1 3.5264 1.4402 0.7000
7 6 2.0278 -1.2692 -0.0006
8 1 3.0939 -1.2772 -0.1734
9 6 1.3459 -2.4714 0.2229
10 6 0.1521 -2.4836 0.9781
11 6 -0.5056 -3.6753 1.1955
12 7 -1.6866 -3.6923 1.9424
13 6 -2.2927 -4.9106 2.2645
14 6 -3.3673 -5.3725 1.5149
15 6 -3.9646 -6.5757 1.8351
16 6 -3.4935 -7.3214 2.9029
17 9 -4.0791 -8.4986 3.2140
18 6 -2.4233 -6.8626 3.6519
19 6 -1.8188 -5.6625 3.3316
20 7 -0.6703 -5.1759 4.1284
21 8 -0.1539 -5.9362 5.0717
22 8 -0.1647 -3.9826 3.8940
23 6 0.0042 -4.8669 0.6719
24 6 1.1720 -4.8675 -0.0688
25 6 1.8511 -3.6880 -0.3007
26 9 2.9919 -3.6931 -1.0244
27 1 -0.4851 0.8400 -0.0004
28 1 -0.2430 -1.5638 1.3835
29 1 -2.0860 -2.8590 2.2375
30 1 -3.7353 -4.7912 0.6825
31 1 -4.8004 -6.9350 1.2530
32 1 -2.0573 -7.4460 4.4838
33 1 -0.5186 -5.7955 0.8475
34 1 1.5551 -5.7954 -0.4672
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001210954786.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:20
Heat of formation + Delta-G solvation = -17.975386 kcal
Electronic energy + Delta-G solvation = -26115.577908 eV
Core-core repulsion = 21846.554528 eV
Total energy + Delta-G solvation = -4269.023380 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.076 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-50.19191 -49.03707 -41.63477 -39.51193 -39.01739 -36.51011 -35.47969 -35.08527
-33.08643 -31.78240 -31.39687 -28.85710 -27.52486 -26.96442 -24.24578 -23.60068
-23.19858 -22.00852 -20.04352 -19.55580 -19.24332 -18.50137 -17.88001 -17.69680
-17.53123 -17.44320 -17.12506 -16.69166 -16.60226 -16.11369 -15.85235 -15.43835
-14.88256 -14.85553 -14.45131 -14.37134 -13.67741 -13.63382 -13.46594 -13.30703
-13.15079 -12.93678 -12.77155 -12.51760 -12.33169 -12.13704 -12.02690 -11.80819
-11.39525 -11.21396 -10.81958 -10.73686 -10.10930 -9.51682 -8.81327 -8.16806
-6.38217 -1.93369 -0.43161 -0.12233 0.02888 0.92412 1.05486 1.38822
1.49554 1.53805 1.91729 2.18791 2.29567 2.60888 2.73057 3.15372
3.41999 3.54076 3.59411 3.77318 4.09849 4.15006 4.30431 4.44326
4.58045 4.61802 4.67169 4.80822 4.92182 5.03245 5.18105 5.26627
5.37237 5.53552 5.73282 5.77253 5.92368 6.12144 6.30347 6.66450
6.72501 6.79822 7.03571 8.13598
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.018081 B = 0.003795 C = 0.003717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1548.206225 B = 7377.210856 C = 7530.300298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.776 5.776
2 C 0.044 3.956
3 Si 0.990 3.010
4 H -0.259 1.259
5 H -0.253 1.253
6 H -0.264 1.264
7 C -0.497 4.497
8 H 0.069 0.931
9 C 0.092 3.908
10 C -0.223 4.223
11 C 0.239 3.761
12 N -0.702 5.702
13 C 0.223 3.777
14 C -0.088 4.088
15 C -0.053 4.053
16 C 0.106 3.894
17 F -0.118 7.118
18 C -0.087 4.087
19 C -0.012 4.012
20 N -0.012 5.012
21 O -0.205 6.205
22 O -0.173 6.173
23 C -0.292 4.292
24 C -0.082 4.082
25 C -0.115 4.115
26 F -0.177 7.177
27 H 0.302 0.698
28 H 0.121 0.879
29 H 0.417 0.583
30 H 0.185 0.815
31 H 0.205 0.795
32 H 0.171 0.829
33 H 0.106 0.894
34 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.679 -8.298 3.197 17.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.180 4.180
3 Si 0.809 3.191
4 H -0.183 1.183
5 H -0.177 1.177
6 H -0.188 1.188
7 C -0.524 4.524
8 H 0.087 0.913
9 C 0.088 3.912
10 C -0.246 4.246
11 C 0.142 3.858
12 N -0.335 5.335
13 C 0.126 3.874
14 C -0.108 4.108
15 C -0.072 4.072
16 C 0.085 3.915
17 F -0.096 7.096
18 C -0.108 4.108
19 C -0.102 4.102
20 N 0.462 4.538
21 O -0.393 6.393
22 O -0.366 6.366
23 C -0.314 4.314
24 C -0.102 4.102
25 C -0.136 4.136
26 F -0.157 7.157
27 H 0.114 0.886
28 H 0.139 0.861
29 H 0.257 0.743
30 H 0.202 0.798
31 H 0.222 0.778
32 H 0.189 0.811
33 H 0.124 0.876
34 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -15.374 -8.562 2.860 17.828
hybrid contribution 1.277 0.817 0.469 1.587
sum -14.097 -7.745 3.329 16.425
Atomic orbital electron populations
1.69083 1.09611 1.32017 1.29037 1.28161 0.95478 1.04159 0.90190
0.85107 0.79219 0.74910 0.79882 1.18299 1.17650 1.18752 1.20767
0.95545 0.91031 1.45083 0.91281 1.17639 0.92811 0.91295 0.89411
1.20502 0.99825 0.96251 1.08059 1.17293 0.85334 0.93538 0.89629
1.41757 1.26014 1.04991 1.60742 1.17760 0.92460 0.87314 0.89826
1.21831 0.93645 0.96249 0.99103 1.21993 0.99584 0.91932 0.93678
1.17191 0.93529 0.84156 0.96607 1.91609 1.82278 1.43379 1.92377
1.20989 0.94924 0.93294 1.01556 1.20988 0.91723 0.99838 0.97604
1.50593 1.01275 1.01976 0.99925 1.96201 1.64652 1.53586 1.24880
1.96415 1.64827 1.01301 1.74090 1.19799 1.01818 0.95642 1.14127
1.20421 0.95497 0.95315 0.98946 1.18234 0.90087 0.96362 1.08897
1.91188 1.49754 1.97510 1.77232 0.88570 0.86147 0.74294 0.79751
0.77840 0.81121 0.87564 0.86392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -37.07 10.84 23.22 0.25 -36.82 16
2 C 0.04 2.13 5.43 87.21 0.47 2.60 16
3 Si 0.99 36.90 29.66 68.60 2.03 38.93 16
4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16
5 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16
6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16
7 C -0.50 -27.77 9.03 24.87 0.22 -27.55 16
8 H 0.07 3.92 7.82 -2.91 -0.02 3.90 16
9 C 0.09 5.17 5.61 -21.24 -0.12 5.05 16
10 C -0.22 -11.34 8.58 22.92 0.20 -11.15 16
11 C 0.24 10.41 5.04 38.16 0.19 10.60 16
12 N -0.70 -23.49 3.86 -180.59 -0.70 -24.19 16
13 C 0.22 5.84 4.36 38.18 0.17 6.00 16
14 C -0.09 -1.42 9.97 22.40 0.22 -1.20 16
15 C -0.05 -0.55 10.02 22.30 0.22 -0.33 16
16 C 0.11 1.56 7.30 22.38 0.16 1.72 16
17 F -0.12 -1.70 17.27 44.97 0.78 -0.92 16
18 C -0.09 -1.80 9.55 22.30 0.21 -1.59 16
19 C -0.01 -0.34 6.78 36.50 0.25 -0.09 16
20 N -0.01 -0.46 4.98 -46.16 -0.23 -0.69 16
21 O -0.20 -7.77 19.17 3.52 0.07 -7.70 16
22 O -0.17 -7.65 16.54 3.51 0.06 -7.59 16
23 C -0.29 -12.68 9.31 22.66 0.21 -12.47 16
24 C -0.08 -3.91 9.99 22.24 0.22 -3.69 16
25 C -0.12 -6.28 7.33 23.10 0.17 -6.12 16
26 F -0.18 -9.74 16.74 44.97 0.75 -8.99 16
27 H 0.30 12.53 8.27 -92.71 -0.77 11.77 16
28 H 0.12 6.22 6.09 -2.91 -0.02 6.21 16
29 H 0.42 13.05 8.83 -92.71 -0.82 12.23 16
30 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16
31 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16
32 H 0.17 3.29 7.59 -2.91 -0.02 3.27 16
33 H 0.11 4.05 6.90 -2.91 -0.02 4.03 16
34 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16
Total: -1.00 -69.18 318.35 6.20 -62.98
By element:
Atomic # 1 Polarization: 22.79 SS G_CDS: 0.38 Total: 23.18 kcal
Atomic # 6 Polarization: -41.00 SS G_CDS: 2.81 Total: -38.19 kcal
Atomic # 7 Polarization: -61.02 SS G_CDS: -0.68 Total: -61.69 kcal
Atomic # 8 Polarization: -15.41 SS G_CDS: 0.13 Total: -15.29 kcal
Atomic # 9 Polarization: -11.44 SS G_CDS: 1.53 Total: -9.91 kcal
Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal
Total: -69.18 6.20 -62.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210954786.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.005 kcal
(2) G-P(sol) polarization free energy of solvation -69.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.975 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds