Wall clock time and date at job start Tue Mar 31 2020 13:55:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30271 * 119.25279 * 2 1
4 4 C 1.33932 * 122.08410 * 180.29120 * 3 2 1
5 5 Cl 1.73593 * 119.82201 * 179.68211 * 4 3 2
6 6 C 1.36297 * 120.35717 * 359.70257 * 4 3 2
7 7 N 1.40156 * 120.73398 * 180.02562 * 6 4 3
8 8 C 1.42355 * 118.52993 * 0.02562 * 6 4 3
9 9 N 1.31557 * 120.94004 * 180.02562 * 8 6 4
10 10 N 1.36119 * 119.24759 * 179.70700 * 2 1 3
11 11 C 1.40007 * 120.29632 * 359.97438 * 10 2 1
12 12 C 1.38763 * 120.10289 * 269.70010 * 11 10 2
13 13 C 1.38161 * 119.99523 * 180.02562 * 12 11 10
14 14 C 1.38373 * 120.20703 * 0.02562 * 13 12 11
15 15 C 1.38136 * 120.21135 * 0.02562 * 14 13 12
16 16 C 1.38769 * 120.00058 * 359.97438 * 15 14 13
17 17 O 1.35749 * 120.10278 * 180.02562 * 16 15 14
18 18 C 1.34809 * 117.00182 * 354.40238 * 17 16 15
19 19 H 1.08003 * 119.99864 * 5.06705 * 18 17 16
20 20 C 1.38631 * 120.00191 * 185.06152 * 18 17 16
21 21 N 1.31568 * 120.00048 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00315 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.46841 * 90.00132 * 22 20 18
24 24 H 1.48494 * 109.47543 * 210.00442 * 22 20 18
25 25 H 1.48501 * 109.46902 * 330.00775 * 22 20 18
26 26 H 1.08997 * 109.47099 * 270.29054 * 1 2 3
27 27 H 1.08994 * 109.47311 * 30.29286 * 1 2 3
28 28 H 1.09005 * 109.47416 * 150.29502 * 1 2 3
29 29 H 0.96998 * 120.00349 * 179.97438 * 7 6 4
30 30 H 0.97000 * 119.99975 * 359.97438 * 7 6 4
31 31 H 0.96999 * 119.99934 * 359.97438 * 9 8 6
32 32 H 1.07996 * 120.00046 * 0.02562 * 12 11 10
33 33 H 1.08001 * 119.89241 * 180.02562 * 13 12 11
34 34 H 1.07998 * 119.88955 * 180.27438 * 14 13 12
35 35 H 1.07994 * 119.99988 * 179.97438 * 15 14 13
36 36 H 0.97006 * 120.00576 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1435 1.1366 0.0000
4 6 3.4812 1.2027 -0.0058
5 17 4.2690 2.7496 -0.0138
6 6 4.2273 0.0621 -0.0058
7 7 5.6276 0.1221 -0.0113
8 6 3.5528 -1.1915 -0.0002
9 7 4.2261 -2.3218 0.0006
10 7 2.1720 -1.1876 0.0061
11 6 1.4623 -2.3945 0.0128
12 6 1.1155 -2.9912 1.2166
13 6 0.4156 -4.1825 1.2206
14 6 0.0589 -4.7844 0.0268
15 6 0.4007 -4.1984 -1.1765
16 6 1.1036 -3.0020 -1.1907
17 8 1.4402 -2.4240 -2.3720
18 6 1.1649 -3.1190 -3.4938
19 1 0.6239 -4.0518 -3.4321
20 6 1.5760 -2.6364 -4.7267
21 7 2.2353 -1.5003 -4.8019
22 14 1.1951 -3.5998 -6.2811
23 1 -0.1156 -3.1630 -6.8255
24 1 2.2570 -3.3528 -7.2893
25 1 1.1410 -5.0496 -5.9641
26 1 -0.3633 0.0052 1.0276
27 1 -0.3633 0.8873 -0.5183
28 1 -0.3634 -0.8926 -0.5093
29 1 6.1482 -0.6963 -0.0109
30 1 6.0761 0.9822 -0.0155
31 1 5.1959 -2.3086 -0.0032
32 1 1.3925 -2.5245 2.1502
33 1 0.1461 -4.6452 2.1585
34 1 -0.4920 -5.7133 0.0359
35 1 0.1210 -4.6713 -2.1062
36 1 2.5226 -1.1624 -5.6645
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001212598283.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:55:34
Heat of formation + Delta-G solvation = 73.890326 kcal
Electronic energy + Delta-G solvation = -24875.943277 eV
Core-core repulsion = 21194.992925 eV
Total energy + Delta-G solvation = -3680.950352 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.078 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.04316 -38.99062 -36.88069 -36.34805 -35.87293 -34.68515 -32.40813 -32.00607
-30.37647 -29.48960 -28.60235 -26.76540 -25.48929 -23.76576 -21.97784 -21.76421
-21.17264 -18.70157 -18.13212 -18.06716 -16.62970 -16.37657 -15.75709 -15.64770
-15.40052 -14.70610 -14.36311 -14.14886 -13.96989 -13.76792 -13.41930 -12.97541
-12.81123 -12.80719 -12.13983 -12.03039 -11.78749 -11.42774 -11.24598 -11.17985
-11.01477 -10.97151 -10.81774 -10.55291 -10.42818 -9.84284 -9.58208 -9.05277
-8.94299 -8.73849 -8.29915 -7.39766 -6.65318 -6.54032 -4.14168 1.16953
1.85008 2.18157 2.21500 2.29348 2.89676 3.06840 3.08563 3.13207
3.81353 3.86647 3.92416 4.31666 4.51133 4.93310 5.06934 5.10969
5.18600 5.51085 5.54656 5.65856 5.76915 5.78913 5.93892 6.05802
6.13118 6.33712 6.45652 6.52168 6.73828 6.89871 6.95390 7.15509
7.21592 7.32656 7.45738 7.69828 7.72471 7.87318 8.27953 8.64347
8.89637 9.53782 10.61837
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.011094 B = 0.005781 C = 0.004493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2523.276077 B = 4842.542046 C = 6229.752338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.400 3.600
3 N -0.524 5.524
4 C 0.102 3.898
5 Cl -0.049 7.049
6 C 0.085 3.915
7 N -0.859 5.859
8 C 0.431 3.569
9 N -0.740 5.740
10 N -0.427 5.427
11 C 0.036 3.964
12 C -0.047 4.047
13 C -0.209 4.209
14 C -0.058 4.058
15 C -0.228 4.228
16 C 0.170 3.830
17 O -0.160 6.160
18 C -0.395 4.395
19 H 0.094 0.906
20 C 0.043 3.957
21 N -0.852 5.852
22 Si 0.941 3.059
23 H -0.272 1.272
24 H -0.277 1.277
25 H -0.266 1.266
26 H 0.090 0.910
27 H 0.097 0.903
28 H 0.090 0.910
29 H 0.395 0.605
30 H 0.405 0.595
31 H 0.337 0.663
32 H 0.113 0.887
33 H 0.113 0.887
34 H 0.112 0.888
35 H 0.133 0.867
36 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.293 1.573 9.729 9.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.135 3.865
3 N -0.247 5.247
4 C -0.051 4.051
5 Cl -0.021 7.021
6 C -0.029 4.029
7 N -0.404 5.404
8 C 0.156 3.844
9 N -0.372 5.372
10 N -0.128 5.128
11 C -0.056 4.056
12 C -0.067 4.067
13 C -0.228 4.228
14 C -0.077 4.077
15 C -0.248 4.248
16 C 0.112 3.888
17 O -0.062 6.062
18 C -0.470 4.470
19 H 0.112 0.888
20 C -0.162 4.162
21 N -0.485 5.485
22 Si 0.765 3.235
23 H -0.197 1.197
24 H -0.203 1.203
25 H -0.191 1.191
26 H 0.108 0.892
27 H 0.115 0.885
28 H 0.109 0.891
29 H 0.225 0.775
30 H 0.236 0.764
31 H 0.154 0.846
32 H 0.131 0.869
33 H 0.131 0.869
34 H 0.131 0.869
35 H 0.151 0.849
36 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -0.588 1.788 9.460 9.645
hybrid contribution 1.776 -0.285 -1.023 2.069
sum 1.188 1.503 8.437 8.652
Atomic orbital electron populations
1.20792 0.85090 1.05498 1.03986 1.22800 0.95554 0.78617 0.89514
1.67105 1.07457 1.24268 1.25910 1.20059 0.89180 0.84915 1.10931
1.98316 1.77593 1.29114 1.97092 1.18589 0.86388 0.92279 1.05649
1.42116 1.01603 1.11091 1.85619 1.18315 0.84718 0.88214 0.93180
1.69821 1.13238 1.24530 1.29650 1.41678 1.02553 1.05787 1.62831
1.16413 1.07331 0.90135 0.91685 1.20616 0.96148 0.94914 0.94990
1.20435 1.07205 0.97666 0.97523 1.20866 0.96680 0.98004 0.92109
1.21081 1.06605 0.98146 0.98923 1.19327 0.91886 0.90883 0.86663
1.83994 1.69737 1.41800 1.10625 1.21340 1.37649 1.06125 0.81924
0.88840 1.25309 0.95833 0.96522 0.98583 1.70058 1.33995 1.18358
1.26091 0.85713 0.78468 0.79378 0.79916 1.19708 1.20253 1.19075
0.89194 0.88476 0.89113 0.77532 0.76404 0.84590 0.86862 0.86882
0.86945 0.84940 0.91897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.44 9.69 36.00 0.35 -1.09 16
2 C 0.40 7.57 7.59 -154.62 -1.17 6.40 16
3 N -0.52 -10.08 10.24 -7.49 -0.08 -10.16 16
4 C 0.10 1.89 7.27 -17.33 -0.13 1.76 16
5 Cl -0.05 -0.76 27.73 -51.86 -1.44 -2.20 16
6 C 0.08 1.55 6.82 -83.17 -0.57 0.99 16
7 N -0.86 -12.27 9.05 32.71 0.30 -11.97 16
8 C 0.43 8.85 7.54 -155.37 -1.17 7.68 16
9 N -0.74 -15.20 13.43 31.49 0.42 -14.77 16
10 N -0.43 -8.67 2.48 -56.71 -0.14 -8.81 16
11 C 0.04 0.72 3.04 -83.46 -0.25 0.46 16
12 C -0.05 -0.81 9.96 -39.42 -0.39 -1.20 16
13 C -0.21 -3.27 10.04 -39.56 -0.40 -3.67 16
14 C -0.06 -0.96 10.04 -39.57 -0.40 -1.36 16
15 C -0.23 -4.57 9.16 -39.42 -0.36 -4.93 16
16 C 0.17 3.86 6.16 -38.92 -0.24 3.62 16
17 O -0.16 -4.34 9.50 0.11 0.00 -4.34 16
18 C -0.39 -10.59 9.49 30.88 0.29 -10.29 16
19 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16
20 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16
21 N -0.85 -24.63 13.67 55.48 0.76 -23.87 16
22 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16
23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16
24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
27 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16
28 H 0.09 1.49 6.57 -51.93 -0.34 1.15 16
29 H 0.40 5.00 7.19 -40.82 -0.29 4.70 16
30 H 0.40 5.03 7.50 -40.82 -0.31 4.72 16
31 H 0.34 5.96 7.09 -40.82 -0.29 5.68 16
32 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16
33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16
34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16
35 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16
36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
LS Contribution 327.22 15.07 4.93 4.93
Total: -1.00 -32.05 327.22 -7.85 -39.90
By element:
Atomic # 1 Polarization: 19.85 SS G_CDS: -3.05 Total: 16.80 kcal
Atomic # 6 Polarization: 3.96 SS G_CDS: -4.53 Total: -0.57 kcal
Atomic # 7 Polarization: -70.85 SS G_CDS: 1.26 Total: -69.59 kcal
Atomic # 8 Polarization: -4.34 SS G_CDS: 0.00 Total: -4.34 kcal
Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal
Atomic # 17 Polarization: -0.76 SS G_CDS: -1.44 Total: -2.20 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.05 -7.85 -39.90 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001212598283.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.788 kcal
(2) G-P(sol) polarization free energy of solvation -32.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds