Wall clock time and date at job start Tue Mar 31 2020 13:55:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30271 * 119.25279 * 2 1
4 4 C 1.33932 * 122.08410 * 180.29120 * 3 2 1
5 5 Cl 1.73593 * 119.82201 * 179.68211 * 4 3 2
6 6 C 1.36297 * 120.35717 * 359.70257 * 4 3 2
7 7 N 1.40156 * 120.73398 * 180.02562 * 6 4 3
8 8 C 1.42355 * 118.52993 * 0.02562 * 6 4 3
9 9 N 1.31557 * 120.94004 * 180.02562 * 8 6 4
10 10 N 1.36119 * 119.24759 * 179.70700 * 2 1 3
11 11 C 1.40007 * 120.29632 * 359.97438 * 10 2 1
12 12 C 1.38763 * 120.10289 * 269.70010 * 11 10 2
13 13 C 1.38161 * 119.99523 * 180.02562 * 12 11 10
14 14 C 1.38373 * 120.20703 * 0.02562 * 13 12 11
15 15 C 1.38136 * 120.21135 * 0.02562 * 14 13 12
16 16 C 1.38769 * 120.00058 * 359.97438 * 15 14 13
17 17 O 1.35749 * 120.10278 * 180.02562 * 16 15 14
18 18 C 1.34809 * 117.00182 * 354.40238 * 17 16 15
19 19 H 1.08003 * 119.99864 * 5.06705 * 18 17 16
20 20 C 1.38631 * 120.00191 * 185.06152 * 18 17 16
21 21 N 1.31568 * 120.00048 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00315 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.46841 * 90.00132 * 22 20 18
24 24 H 1.48494 * 109.47543 * 210.00442 * 22 20 18
25 25 H 1.48501 * 109.46902 * 330.00775 * 22 20 18
26 26 H 1.08997 * 109.47099 * 270.29054 * 1 2 3
27 27 H 1.08994 * 109.47311 * 30.29286 * 1 2 3
28 28 H 1.09005 * 109.47416 * 150.29502 * 1 2 3
29 29 H 0.96998 * 120.00349 * 179.97438 * 7 6 4
30 30 H 0.97000 * 119.99975 * 359.97438 * 7 6 4
31 31 H 0.96999 * 119.99934 * 359.97438 * 9 8 6
32 32 H 1.07996 * 120.00046 * 0.02562 * 12 11 10
33 33 H 1.08001 * 119.89241 * 180.02562 * 13 12 11
34 34 H 1.07998 * 119.88955 * 180.27438 * 14 13 12
35 35 H 1.07994 * 119.99988 * 179.97438 * 15 14 13
36 36 H 0.97006 * 120.00576 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1435 1.1366 0.0000
4 6 3.4812 1.2027 -0.0058
5 17 4.2690 2.7496 -0.0138
6 6 4.2273 0.0621 -0.0058
7 7 5.6276 0.1221 -0.0113
8 6 3.5528 -1.1915 -0.0002
9 7 4.2261 -2.3218 0.0006
10 7 2.1720 -1.1876 0.0061
11 6 1.4623 -2.3945 0.0128
12 6 1.1155 -2.9912 1.2166
13 6 0.4156 -4.1825 1.2206
14 6 0.0589 -4.7844 0.0268
15 6 0.4007 -4.1984 -1.1765
16 6 1.1036 -3.0020 -1.1907
17 8 1.4402 -2.4240 -2.3720
18 6 1.1649 -3.1190 -3.4938
19 1 0.6239 -4.0518 -3.4321
20 6 1.5760 -2.6364 -4.7267
21 7 2.2353 -1.5003 -4.8019
22 14 1.1951 -3.5998 -6.2811
23 1 -0.1156 -3.1630 -6.8255
24 1 2.2570 -3.3528 -7.2893
25 1 1.1410 -5.0496 -5.9641
26 1 -0.3633 0.0052 1.0276
27 1 -0.3633 0.8873 -0.5183
28 1 -0.3634 -0.8926 -0.5093
29 1 6.1482 -0.6963 -0.0109
30 1 6.0761 0.9822 -0.0155
31 1 5.1959 -2.3086 -0.0032
32 1 1.3925 -2.5245 2.1502
33 1 0.1461 -4.6452 2.1585
34 1 -0.4920 -5.7133 0.0359
35 1 0.1210 -4.6713 -2.1062
36 1 2.5226 -1.1624 -5.6645
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001212598283.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:55:33
Heat of formation + Delta-G solvation = 52.850470 kcal
Electronic energy + Delta-G solvation = -24876.855634 eV
Core-core repulsion = 21194.992925 eV
Total energy + Delta-G solvation = -3681.862709 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.078 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.50620 -40.57091 -38.41644 -37.77807 -37.26550 -36.11496 -34.29534 -33.41693
-31.73128 -30.96856 -30.14667 -28.10015 -27.36942 -25.22157 -23.45671 -23.32611
-22.62175 -20.10655 -19.87573 -19.59695 -18.18436 -17.88988 -17.15355 -17.05095
-16.86623 -16.33292 -15.92907 -15.56368 -15.49355 -15.40067 -14.92264 -14.51346
-14.18512 -14.15818 -13.62518 -13.42287 -13.39677 -12.98473 -12.69313 -12.53109
-12.50999 -12.34715 -12.24062 -12.13328 -11.83582 -11.39810 -11.22503 -10.81596
-10.58542 -10.16257 -9.74130 -9.00539 -8.47105 -8.05243 -6.14601 -0.27178
0.38910 0.72245 0.77715 0.82421 1.33422 1.42448 1.45703 1.50172
2.14799 2.44434 2.54990 2.80812 3.07242 3.16549 3.45252 3.67414
3.78459 4.14677 4.18210 4.30289 4.44132 4.57277 4.63268 4.68679
4.78089 4.94640 5.04897 5.10464 5.14486 5.29756 5.55034 5.58786
5.74302 5.91609 5.99782 6.08968 6.27224 6.59866 6.83079 6.97531
7.18184 7.75474 8.74077
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.011094 B = 0.005781 C = 0.004493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2523.276077 B = 4842.542046 C = 6229.752338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.383 3.617
3 N -0.533 5.533
4 C 0.081 3.919
5 Cl -0.025 7.025
6 C 0.079 3.921
7 N -0.844 5.844
8 C 0.414 3.586
9 N -0.763 5.763
10 N -0.435 5.435
11 C 0.035 3.965
12 C -0.051 4.051
13 C -0.178 4.178
14 C -0.052 4.052
15 C -0.240 4.240
16 C 0.135 3.865
17 O -0.213 6.213
18 C -0.408 4.408
19 H 0.105 0.895
20 C -0.019 4.019
21 N -0.915 5.915
22 Si 1.012 2.988
23 H -0.261 1.261
24 H -0.279 1.279
25 H -0.252 1.252
26 H 0.126 0.874
27 H 0.104 0.896
28 H 0.074 0.926
29 H 0.404 0.596
30 H 0.415 0.585
31 H 0.347 0.653
32 H 0.137 0.863
33 H 0.160 0.840
34 H 0.153 0.847
35 H 0.125 0.875
36 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.369 0.066 11.888 11.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.118 3.882
3 N -0.256 5.256
4 C -0.072 4.072
5 Cl 0.003 6.997
6 C -0.036 4.036
7 N -0.390 5.390
8 C 0.140 3.860
9 N -0.398 5.398
10 N -0.136 5.136
11 C -0.056 4.056
12 C -0.070 4.070
13 C -0.197 4.197
14 C -0.070 4.070
15 C -0.260 4.260
16 C 0.082 3.918
17 O -0.118 6.118
18 C -0.484 4.484
19 H 0.122 0.878
20 C -0.217 4.217
21 N -0.552 5.552
22 Si 0.832 3.168
23 H -0.185 1.185
24 H -0.204 1.204
25 H -0.175 1.175
26 H 0.144 0.856
27 H 0.123 0.877
28 H 0.092 0.908
29 H 0.235 0.765
30 H 0.248 0.752
31 H 0.165 0.835
32 H 0.155 0.845
33 H 0.177 0.823
34 H 0.171 0.829
35 H 0.143 0.857
36 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -1.668 0.258 11.683 11.804
hybrid contribution 2.076 0.122 -1.316 2.461
sum 0.408 0.380 10.367 10.382
Atomic orbital electron populations
1.20892 0.82869 1.04953 1.06096 1.23494 0.96963 0.78306 0.89425
1.67160 1.07928 1.24486 1.26070 1.20334 0.89316 0.86189 1.11362
1.98310 1.77046 1.27344 1.96991 1.18612 0.87834 0.91629 1.05525
1.42050 1.00208 1.12143 1.84608 1.18671 0.85204 0.89065 0.93084
1.69790 1.14158 1.25080 1.30723 1.41872 1.02634 1.06280 1.62836
1.16775 1.06753 0.90116 0.91942 1.20998 0.95911 0.95468 0.94666
1.21035 1.03542 0.96003 0.99074 1.21309 0.95828 0.99038 0.90825
1.21257 1.06729 0.97588 1.00403 1.19904 0.93094 0.92398 0.86419
1.83973 1.72799 1.43384 1.11673 1.21789 1.37450 1.06543 0.82630
0.87817 1.26484 0.95736 0.97517 1.01960 1.70219 1.37470 1.21007
1.26541 0.84664 0.78405 0.78406 0.75289 1.18541 1.20398 1.17543
0.85573 0.87740 0.90770 0.76544 0.75244 0.83546 0.84538 0.82267
0.82893 0.85743 0.92284
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.68 9.69 71.23 0.69 -1.99 16
2 C 0.38 14.59 7.59 137.85 1.05 15.63 16
3 N -0.53 -20.64 10.24 -177.60 -1.82 -22.46 16
4 C 0.08 3.03 7.27 83.92 0.61 3.64 16
5 Cl -0.03 -0.77 27.73 -2.72 -0.08 -0.84 16
6 C 0.08 2.92 6.82 38.38 0.26 3.18 16
7 N -0.84 -23.87 9.05 -50.44 -0.46 -24.33 16
8 C 0.41 17.25 7.54 134.43 1.01 18.27 16
9 N -0.76 -31.68 13.43 -54.29 -0.73 -32.41 16
10 N -0.43 -17.78 2.48 -333.34 -0.83 -18.60 16
11 C 0.04 1.40 3.04 38.26 0.12 1.52 16
12 C -0.05 -1.60 9.96 22.38 0.22 -1.38 16
13 C -0.18 -4.69 10.04 22.28 0.22 -4.47 16
14 C -0.05 -1.52 10.04 22.28 0.22 -1.30 16
15 C -0.24 -9.45 9.16 22.37 0.21 -9.24 16
16 C 0.13 6.24 6.16 22.70 0.14 6.38 16
17 O -0.21 -12.14 9.50 -22.52 -0.21 -12.36 16
18 C -0.41 -22.86 9.49 67.91 0.64 -22.21 16
19 H 0.10 5.28 5.21 -2.91 -0.02 5.26 16
20 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16
21 N -0.91 -56.03 13.67 21.61 0.30 -55.73 16
22 Si 1.01 42.51 29.55 68.60 2.03 44.53 16
23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
24 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16
25 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16
26 H 0.13 2.73 8.14 -2.39 -0.02 2.72 16
27 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16
28 H 0.07 2.47 6.57 -2.38 -0.02 2.46 16
29 H 0.40 10.10 7.19 -92.71 -0.67 9.43 16
30 H 0.41 10.00 7.50 -92.71 -0.70 9.31 16
31 H 0.35 12.41 7.09 -92.71 -0.66 11.75 16
32 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16
33 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16
34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16
35 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16
36 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16
Total: -1.00 -74.45 327.22 3.24 -71.21
By element:
Atomic # 1 Polarization: 44.40 SS G_CDS: -0.83 Total: 43.57 kcal
Atomic # 6 Polarization: 1.55 SS G_CDS: 5.86 Total: 7.42 kcal
Atomic # 7 Polarization: -150.00 SS G_CDS: -3.53 Total: -153.53 kcal
Atomic # 8 Polarization: -12.14 SS G_CDS: -0.21 Total: -12.36 kcal
Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal
Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.84 kcal
Total: -74.45 3.24 -71.21 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001212598283.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.058 kcal
(2) G-P(sol) polarization free energy of solvation -74.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds