Wall clock time and date at job start Tue Mar 31 2020 12:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35931 * 116.99829 * 2 1 4 4 C 1.38745 * 120.42001 * 359.97438 * 3 2 1 5 5 N 1.31873 * 120.86369 * 179.97438 * 4 3 2 6 6 C 1.31867 * 121.83665 * 359.97438 * 5 4 3 7 7 Cl 1.73598 * 119.62498 * 179.97438 * 6 5 4 8 8 C 1.39088 * 120.74527 * 0.02562 * 6 5 4 9 9 N 1.39768 * 120.46401 * 180.02562 * 8 6 5 10 10 C 1.39784 * 119.99920 * 172.44186 * 9 8 6 11 11 C 1.38979 * 120.00684 * 318.46836 * 10 9 8 12 12 C 1.37996 * 119.98945 * 179.73955 * 11 10 9 13 13 C 1.38915 * 120.00625 * 0.53123 * 12 11 10 14 14 O 1.35784 * 119.99383 * 179.70069 * 13 12 11 15 15 C 1.34810 * 117.00216 * 185.63387 * 14 13 12 16 16 H 1.08003 * 120.00071 * 354.88628 * 15 14 13 17 17 C 1.38610 * 119.99908 * 174.88885 * 15 14 13 18 18 N 1.31592 * 120.00146 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47043 * 59.99707 * 19 17 15 21 21 H 1.48495 * 109.47614 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47235 * 300.00099 * 19 17 15 23 23 C 1.38918 * 120.01530 * 359.72078 * 13 12 11 24 24 C 1.37992 * 120.00572 * 0.02562 * 23 13 12 25 25 C 1.38990 * 120.41900 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47024 * 60.00395 * 1 2 3 27 27 H 1.08999 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47210 * 300.00151 * 1 2 3 29 29 H 1.07996 * 119.56961 * 359.70160 * 4 3 2 30 30 H 0.96997 * 120.00312 * 352.44894 * 9 8 6 31 31 H 1.07998 * 120.00391 * 359.97438 * 11 10 9 32 32 H 1.07989 * 119.99437 * 180.23326 * 12 11 10 33 33 H 0.96996 * 120.00073 * 179.97438 * 18 17 15 34 34 H 1.07999 * 119.99516 * 180.02562 * 23 13 12 35 35 H 1.08000 * 119.99841 * 179.97438 * 24 23 13 36 36 H 1.08003 * 120.84029 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2990 2.3803 -0.0005 5 7 1.8885 3.5599 0.0000 6 6 3.2016 3.6813 0.0015 7 17 3.9172 5.2629 0.0014 8 6 4.0197 2.5564 0.0021 9 7 5.4108 2.6919 0.0043 10 6 6.2225 1.5652 0.1641 11 6 5.8813 0.5889 1.0925 12 6 6.6801 -0.5259 1.2462 13 6 7.8308 -0.6669 0.4809 14 8 8.6197 -1.7610 0.6366 15 6 9.7798 -1.7819 -0.0498 16 1 10.0069 -0.9920 -0.7505 17 6 10.6810 -2.8170 0.1436 18 7 10.4045 -3.7792 0.9976 19 14 12.2881 -2.8464 -0.8081 20 1 13.0719 -1.6249 -0.4937 21 1 13.0700 -4.0485 -0.4225 22 1 12.0004 -2.8886 -2.2644 23 6 8.1748 0.3113 -0.4435 24 6 7.3737 1.4238 -0.6014 25 6 3.4335 1.2941 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2205 2.3235 -0.0058 30 1 5.8129 3.5678 -0.1050 31 1 4.9893 0.7008 1.6909 32 1 6.4131 -1.2864 1.9649 33 1 11.0350 -4.5038 1.1327 34 1 9.0693 0.2012 -1.0386 35 1 7.6415 2.1845 -1.3198 36 1 4.0416 0.4015 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:39 Heat of formation + Delta-G solvation = 3.819100 kcal Electronic energy + Delta-G solvation = -23189.203107 eV Core-core repulsion = 19472.921487 eV Total energy + Delta-G solvation = -3716.281620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.071 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93298 -39.39204 -38.51713 -37.28832 -36.52075 -34.90516 -32.34984 -31.69150 -30.39578 -29.81249 -27.78093 -27.38859 -25.37780 -23.81243 -22.85267 -21.99876 -20.99268 -18.66286 -18.01210 -17.97296 -17.28847 -16.99565 -16.11430 -15.96132 -15.85467 -14.72593 -14.64686 -14.40424 -14.32777 -13.82112 -13.78982 -13.34065 -13.06411 -12.86120 -12.74360 -12.23163 -12.16068 -12.02521 -11.71314 -11.60147 -11.36553 -11.26292 -11.20731 -10.85355 -10.72073 -10.52847 -9.77231 -9.48156 -9.02801 -8.75620 -8.39204 -8.10868 -6.88551 -6.53599 -4.11662 0.96556 1.12047 1.83110 1.99602 2.16814 2.86291 3.08364 3.09130 3.12380 3.38367 3.57338 3.89547 4.38158 4.42460 4.57342 4.79205 4.82175 4.89337 4.99542 5.09400 5.15592 5.26239 5.41807 5.44755 5.54408 5.88478 5.96289 6.01930 6.14104 6.29211 6.62739 6.70634 6.87433 6.99966 7.09212 7.17261 7.34759 7.52006 7.65467 7.77741 7.90059 8.91306 9.58926 10.63716 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002967 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.392653 B = 9433.640822 C =10696.643510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.131 3.869 4 C -0.031 4.031 5 N -0.405 5.405 6 C 0.062 3.938 7 Cl -0.041 7.041 8 C 0.228 3.772 9 N -0.653 5.653 10 C 0.039 3.961 11 C -0.094 4.094 12 C -0.171 4.171 13 C 0.146 3.854 14 O -0.172 6.172 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.041 3.959 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.214 4.214 24 C -0.084 4.084 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.162 0.838 30 H 0.410 0.590 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.182 10.840 -2.444 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.082 3.918 4 C -0.192 4.192 5 N -0.115 5.115 6 C -0.109 4.109 7 Cl -0.013 7.013 8 C 0.118 3.882 9 N -0.274 5.274 10 C -0.055 4.055 11 C -0.114 4.114 12 C -0.190 4.190 13 C 0.092 3.908 14 O -0.075 6.075 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.493 5.493 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.234 4.234 24 C -0.105 4.105 25 C -0.213 4.213 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.179 0.821 30 H 0.247 0.753 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.343 10.933 -2.199 18.967 hybrid contribution 1.252 -0.030 -0.575 1.378 sum -14.091 10.903 -2.774 18.031 Atomic orbital electron populations 1.23154 0.77873 1.04458 1.01655 1.86137 1.21700 1.25843 1.87885 1.19788 0.92279 0.85556 0.94207 1.22388 1.00035 0.85828 1.10964 1.66606 1.09457 1.27371 1.08062 1.20740 0.89465 0.85737 1.14951 1.98357 1.81068 1.24607 1.97311 1.18030 0.84950 0.91857 0.93315 1.42018 1.00800 1.09277 1.75260 1.17179 0.95299 0.91101 1.01905 1.20614 0.99747 0.94270 0.96758 1.20080 0.95793 0.99738 1.03426 1.19394 0.91300 0.87135 0.92981 1.83985 1.29250 1.33035 1.61221 1.21288 0.93157 1.10684 1.21823 0.88993 1.25303 0.99180 0.94914 0.97031 1.70037 1.36312 1.10518 1.32466 0.85771 0.79960 0.78328 0.79352 1.19432 1.20210 1.19417 1.21027 1.03027 0.95755 1.03618 1.20570 0.94670 0.97724 0.97492 1.20669 0.92182 0.97527 1.10889 0.92288 0.87820 0.92238 0.82135 0.75264 0.86310 0.85844 0.91814 0.84943 0.86936 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.30 -3.49 10.51 -19.52 -0.21 -3.69 16 3 C 0.13 1.65 6.70 -39.12 -0.26 1.38 16 4 C -0.03 -0.36 10.21 -17.35 -0.18 -0.54 16 5 N -0.40 -5.53 10.33 -10.07 -0.10 -5.63 16 6 C 0.06 0.85 7.29 -17.22 -0.13 0.72 16 7 Cl -0.04 -0.50 27.77 -51.86 -1.44 -1.94 16 8 C 0.23 3.22 6.43 -83.58 -0.54 2.68 16 9 N -0.65 -9.14 5.43 -8.26 -0.04 -9.18 16 10 C 0.04 0.63 5.91 -83.69 -0.49 0.13 16 11 C -0.09 -1.59 7.39 -39.40 -0.29 -1.88 16 12 C -0.17 -3.37 9.98 -39.42 -0.39 -3.76 16 13 C 0.15 3.32 6.65 -39.08 -0.26 3.06 16 14 O -0.17 -4.68 9.75 0.00 0.00 -4.68 16 15 C -0.39 -10.53 9.48 30.87 0.29 -10.24 16 16 H 0.09 2.25 5.20 -52.48 -0.27 1.97 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.44 13.67 55.48 0.76 -23.68 16 19 Si 0.94 19.79 29.55 -169.99 -5.02 14.77 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.21 -4.32 9.16 -39.42 -0.36 -4.68 16 24 C -0.08 -1.43 9.96 -39.40 -0.39 -1.82 16 25 C -0.18 -2.58 8.08 -38.95 -0.31 -2.89 16 26 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.32 7.68 -51.93 -0.40 -0.07 16 29 H 0.16 1.37 6.31 -52.49 -0.33 1.04 16 30 H 0.41 5.08 7.55 -40.82 -0.31 4.77 16 31 H 0.12 1.83 6.63 -52.49 -0.35 1.48 16 32 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.13 2.66 5.63 -52.49 -0.30 2.36 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.16 2.47 5.48 -52.48 -0.29 2.18 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -30.07 325.62 -6.62 -36.69 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.04 Total: 8.16 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.42 Total: -15.71 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.61 Total: -38.50 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.21 Total: -8.37 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.44 Total: -1.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -6.62 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.506 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds